EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00000016139 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Plus strand
Length: 13479 bases
Position: chrJH602048.1:12444386-12457864
Accession: 101720593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000022624	CPSF_A	PF03178.15	1.7e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000022838	-	4636	XM_004837720	ENSHGLP00000022624	1441 (aa)	XP_004837777	A0A0P6J4F5

Gene Model

Click here to download ENSHGLG00000016139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000016139's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000016139	CPSF1	100	96.535	ENSG00000071894	CPSF1	100	96.535	Homo_sapiens
ENSHGLG00000016139	CPSF1	100	78.161	ENSAPOG00000019621	cpsf1	100	78.296	Acanthochromis_polyacanthus
ENSHGLG00000016139	CPSF1	97	95.197	ENSAMEG00000005557	CPSF1	99	95.197	Ailuropoda_melanoleuca
ENSHGLG00000016139	CPSF1	100	78.670	ENSACIG00000006112	cpsf1	100	79.017	Amphilophus_citrinellus
ENSHGLG00000016139	CPSF1	100	79.477	ENSAOCG00000007120	cpsf1	100	79.683	Amphiprion_ocellaris
ENSHGLG00000016139	CPSF1	100	79.945	ENSAPEG00000005755	cpsf1	100	80.083	Amphiprion_percula
ENSHGLG00000016139	CPSF1	100	78.138	ENSATEG00000011097	cpsf1	100	78.475	Anabas_testudineus
ENSHGLG00000016139	CPSF1	93	81.608	ENSACAG00000009655	CPSF1	100	81.608	Anolis_carolinensis
ENSHGLG00000016139	CPSF1	100	96.533	ENSANAG00000036514	CPSF1	100	96.533	Aotus_nancymaae
ENSHGLG00000016139	CPSF1	100	77.701	ENSACLG00000012231	cpsf1	99	79.155	Astatotilapia_calliptera
ENSHGLG00000016139	CPSF1	100	73.859	ENSAMXG00000008485	cpsf1	100	73.928	Astyanax_mexicanus
ENSHGLG00000016139	CPSF1	100	94.758	ENSBTAG00000008355	CPSF1	100	95.245	Bos_taurus
ENSHGLG00000016139	CPSF1	100	32.105	WBGene00022301	cpsf-1	100	40.000	Caenorhabditis_elegans
ENSHGLG00000016139	CPSF1	100	96.463	ENSCJAG00000021421	CPSF1	100	96.463	Callithrix_jacchus
ENSHGLG00000016139	CPSF1	96	96.770	ENSCAFG00000001600	CPSF1	100	96.838	Canis_familiaris
ENSHGLG00000016139	CPSF1	100	96.607	ENSCAFG00020020821	CPSF1	100	96.607	Canis_lupus_dingo
ENSHGLG00000016139	CPSF1	100	91.187	ENSCHIG00000015833	CPSF1	100	91.187	Capra_hircus
ENSHGLG00000016139	CPSF1	100	97.295	ENSTSYG00000028560	CPSF1	100	97.295	Carlito_syrichta
ENSHGLG00000016139	CPSF1	97	97.848	ENSCAPG00000014921	CPSF1	99	97.848	Cavia_aperea
ENSHGLG00000016139	CPSF1	100	97.434	ENSCPOG00000011448	CPSF1	100	97.434	Cavia_porcellus
ENSHGLG00000016139	CPSF1	100	96.671	ENSCCAG00000037658	CPSF1	100	96.671	Cebus_capucinus
ENSHGLG00000016139	CPSF1	100	96.394	ENSCATG00000037234	CPSF1	100	96.394	Cercocebus_atys
ENSHGLG00000016139	CPSF1	100	99.375	ENSCLAG00000012166	CPSF1	100	99.375	Chinchilla_lanigera
ENSHGLG00000016139	CPSF1	100	96.533	ENSCSAG00000008502	CPSF1	100	96.533	Chlorocebus_sabaeus
ENSHGLG00000016139	CPSF1	99	87.605	ENSCPBG00000018910	CPSF1	96	87.605	Chrysemys_picta_bellii
ENSHGLG00000016139	CPSF1	96	48.887	ENSCING00000000514	-	100	48.816	Ciona_intestinalis
ENSHGLG00000016139	CPSF1	99	48.591	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSHGLG00000016139	CPSF1	99	90.763	ENSCANG00000032760	CPSF1	99	90.763	Colobus_angolensis_palliatus
ENSHGLG00000016139	CPSF1	100	97.294	ENSCGRG00001016344	Cpsf1	100	97.294	Cricetulus_griseus_chok1gshd
ENSHGLG00000016139	CPSF1	100	95.212	ENSCGRG00000003118	Cpsf1	100	95.212	Cricetulus_griseus_crigri
ENSHGLG00000016139	CPSF1	100	77.839	ENSCSEG00000013464	cpsf1	100	78.047	Cynoglossus_semilaevis
ENSHGLG00000016139	CPSF1	85	76.869	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSHGLG00000016139	CPSF1	100	79.972	ENSDARG00000034178	cpsf1	100	80.041	Danio_rerio
ENSHGLG00000016139	CPSF1	68	96.522	ENSDNOG00000043654	CPSF1	94	96.522	Dasypus_novemcinctus
ENSHGLG00000016139	CPSF1	97	96.911	ENSDORG00000006278	Cpsf1	99	96.911	Dipodomys_ordii
ENSHGLG00000016139	CPSF1	100	45.094	FBgn0024698	Cpsf160	100	45.101	Drosophila_melanogaster
ENSHGLG00000016139	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSHGLG00000016139	CPSF1	100	97.091	ENSEASG00005010774	CPSF1	100	97.091	Equus_asinus_asinus
ENSHGLG00000016139	CPSF1	100	97.161	ENSECAG00000022209	CPSF1	100	97.161	Equus_caballus
ENSHGLG00000016139	CPSF1	100	94.948	ENSEEUG00000000471	CPSF1	100	94.948	Erinaceus_europaeus
ENSHGLG00000016139	CPSF1	100	78.273	ENSELUG00000012271	cpsf1	100	78.821	Esox_lucius
ENSHGLG00000016139	CPSF1	100	99.375	ENSFDAG00000016060	CPSF1	100	99.375	Fukomys_damarensis
ENSHGLG00000016139	CPSF1	100	76.981	ENSFHEG00000016801	cpsf1	100	77.050	Fundulus_heteroclitus
ENSHGLG00000016139	CPSF1	100	78.222	ENSGMOG00000000796	cpsf1	100	78.429	Gadus_morhua
ENSHGLG00000016139	CPSF1	94	83.929	ENSGAFG00000018890	cpsf1	99	83.929	Gambusia_affinis
ENSHGLG00000016139	CPSF1	100	78.882	ENSGACG00000008703	cpsf1	100	78.871	Gasterosteus_aculeatus
ENSHGLG00000016139	CPSF1	100	83.945	ENSGAGG00000004276	CPSF1	98	87.573	Gopherus_agassizii
ENSHGLG00000016139	CPSF1	100	96.461	ENSGGOG00000016185	CPSF1	100	96.461	Gorilla_gorilla
ENSHGLG00000016139	CPSF1	100	79.986	ENSHBUG00000018900	cpsf1	100	80.125	Haplochromis_burtoni
ENSHGLG00000016139	CPSF1	100	99.931	ENSHGLG00100009750	CPSF1	100	99.931	Heterocephalus_glaber_male
ENSHGLG00000016139	CPSF1	100	77.273	ENSHCOG00000018509	cpsf1	100	77.393	Hippocampus_comes
ENSHGLG00000016139	CPSF1	100	76.442	ENSIPUG00000011259	cpsf1	100	76.442	Ictalurus_punctatus
ENSHGLG00000016139	CPSF1	97	96.855	ENSSTOG00000009957	CPSF1	99	96.855	Ictidomys_tridecemlineatus
ENSHGLG00000016139	CPSF1	100	97.155	ENSJJAG00000023002	Cpsf1	100	97.155	Jaculus_jaculus
ENSHGLG00000016139	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSHGLG00000016139	CPSF1	100	77.319	ENSLBEG00000003601	cpsf1	100	77.710	Labrus_bergylta
ENSHGLG00000016139	CPSF1	88	81.731	ENSLACG00000000233	CPSF1	92	81.731	Latimeria_chalumnae
ENSHGLG00000016139	CPSF1	100	78.108	ENSLOCG00000008484	cpsf1	100	78.453	Lepisosteus_oculatus
ENSHGLG00000016139	CPSF1	97	95.204	ENSLAFG00000022601	CPSF1	100	95.204	Loxodonta_africana
ENSHGLG00000016139	CPSF1	100	96.394	ENSMFAG00000037013	CPSF1	100	96.394	Macaca_fascicularis
ENSHGLG00000016139	CPSF1	100	96.463	ENSMMUG00000007380	CPSF1	100	96.463	Macaca_mulatta
ENSHGLG00000016139	CPSF1	97	96.413	ENSMNEG00000043564	CPSF1	100	96.413	Macaca_nemestrina
ENSHGLG00000016139	CPSF1	100	96.394	ENSMLEG00000043010	CPSF1	100	96.394	Mandrillus_leucophaeus
ENSHGLG00000016139	CPSF1	100	78.634	ENSMAMG00000003803	cpsf1	100	78.769	Mastacembelus_armatus
ENSHGLG00000016139	CPSF1	100	77.839	ENSMZEG00005001168	cpsf1	100	77.978	Maylandia_zebra
ENSHGLG00000016139	CPSF1	100	97.294	ENSMAUG00000003601	Cpsf1	100	97.294	Mesocricetus_auratus
ENSHGLG00000016139	CPSF1	100	96.947	ENSMICG00000015767	CPSF1	100	96.947	Microcebus_murinus
ENSHGLG00000016139	CPSF1	100	97.363	ENSMOCG00000022758	Cpsf1	100	97.363	Microtus_ochrogaster
ENSHGLG00000016139	CPSF1	100	79.239	ENSMMOG00000021245	cpsf1	100	79.377	Mola_mola
ENSHGLG00000016139	CPSF1	100	93.168	ENSMODG00000010755	CPSF1	100	93.168	Monodelphis_domestica
ENSHGLG00000016139	CPSF1	100	78.064	ENSMALG00000020545	cpsf1	100	78.199	Monopterus_albus
ENSHGLG00000016139	CPSF1	100	97.779	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.779	Mus_caroli
ENSHGLG00000016139	CPSF1	100	97.641	ENSMUSG00000034022	Cpsf1	100	97.641	Mus_musculus
ENSHGLG00000016139	CPSF1	100	97.710	MGP_PahariEiJ_G0019946	Cpsf1	100	97.710	Mus_pahari
ENSHGLG00000016139	CPSF1	100	97.710	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.710	Mus_spretus
ENSHGLG00000016139	CPSF1	94	96.071	ENSMPUG00000006419	CPSF1	93	96.071	Mustela_putorius_furo
ENSHGLG00000016139	CPSF1	100	96.947	ENSNGAG00000022460	Cpsf1	100	96.947	Nannospalax_galili
ENSHGLG00000016139	CPSF1	100	74.948	ENSNBRG00000000813	cpsf1	100	74.948	Neolamprologus_brichardi
ENSHGLG00000016139	CPSF1	86	84.828	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSHGLG00000016139	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSHGLG00000016139	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSHGLG00000016139	CPSF1	100	99.445	ENSODEG00000013995	CPSF1	100	99.445	Octodon_degus
ENSHGLG00000016139	CPSF1	100	80.332	ENSONIG00000007676	cpsf1	100	80.471	Oreochromis_niloticus
ENSHGLG00000016139	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSHGLG00000016139	CPSF1	100	77.415	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSHGLG00000016139	CPSF1	100	77.551	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSHGLG00000016139	CPSF1	100	77.483	ENSORLG00015009979	cpsf1	100	77.551	Oryzias_latipes_hsok
ENSHGLG00000016139	CPSF1	100	77.452	ENSOMEG00000011849	cpsf1	100	77.793	Oryzias_melastigma
ENSHGLG00000016139	CPSF1	100	97.018	ENSOGAG00000000315	CPSF1	100	97.018	Otolemur_garnettii
ENSHGLG00000016139	CPSF1	100	96.533	ENSPPAG00000019280	CPSF1	100	96.533	Pan_paniscus
ENSHGLG00000016139	CPSF1	100	94.888	ENSPTRG00000051253	-	100	94.888	Pan_troglodytes
ENSHGLG00000016139	CPSF1	100	96.533	ENSPTRG00000049288	-	100	96.533	Pan_troglodytes
ENSHGLG00000016139	CPSF1	97	96.270	ENSPANG00000015005	CPSF1	100	96.270	Papio_anubis
ENSHGLG00000016139	CPSF1	100	81.038	ENSPKIG00000002582	cpsf1	100	81.411	Paramormyrops_kingsleyae
ENSHGLG00000016139	CPSF1	100	93.099	ENSPCIG00000009035	CPSF1	100	93.099	Phascolarctos_cinereus
ENSHGLG00000016139	CPSF1	100	76.845	ENSPFOG00000012870	cpsf1	100	76.845	Poecilia_formosa
ENSHGLG00000016139	CPSF1	100	76.590	ENSPREG00000016307	cpsf1	100	76.590	Poecilia_reticulata
ENSHGLG00000016139	CPSF1	100	88.488	ENSPPYG00000018973	CPSF1	100	88.488	Pongo_abelii
ENSHGLG00000016139	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSHGLG00000016139	CPSF1	100	93.204	ENSPCOG00000020001	CPSF1	100	93.204	Propithecus_coquereli
ENSHGLG00000016139	CPSF1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSHGLG00000016139	CPSF1	100	78.947	ENSPNYG00000004906	cpsf1	100	79.084	Pundamilia_nyererei
ENSHGLG00000016139	CPSF1	100	75.121	ENSPNAG00000024395	cpsf1	100	75.121	Pygocentrus_nattereri
ENSHGLG00000016139	CPSF1	100	97.641	ENSRNOG00000030705	Cpsf1	100	97.641	Rattus_norvegicus
ENSHGLG00000016139	CPSF1	100	96.394	ENSRBIG00000044907	CPSF1	100	96.394	Rhinopithecus_bieti
ENSHGLG00000016139	CPSF1	100	96.325	ENSRROG00000044861	CPSF1	100	96.325	Rhinopithecus_roxellana
ENSHGLG00000016139	CPSF1	97	96.413	ENSSBOG00000027177	CPSF1	100	96.413	Saimiri_boliviensis_boliviensis
ENSHGLG00000016139	CPSF1	100	93.030	ENSSHAG00000006500	CPSF1	100	93.030	Sarcophilus_harrisii
ENSHGLG00000016139	CPSF1	100	78.084	ENSSFOG00015004606	cpsf1	100	81.368	Scleropages_formosus
ENSHGLG00000016139	CPSF1	100	78.334	ENSSMAG00000020547	cpsf1	100	78.402	Scophthalmus_maximus
ENSHGLG00000016139	CPSF1	100	79.461	ENSSDUG00000001100	cpsf1	100	79.806	Seriola_dumerili
ENSHGLG00000016139	CPSF1	100	79.585	ENSSLDG00000003619	cpsf1	100	79.723	Seriola_lalandi_dorsalis
ENSHGLG00000016139	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSHGLG00000016139	CPSF1	96	87.527	ENSSPUG00000014396	CPSF1	100	87.527	Sphenodon_punctatus
ENSHGLG00000016139	CPSF1	100	78.281	ENSSPAG00000005349	cpsf1	100	78.417	Stegastes_partitus
ENSHGLG00000016139	CPSF1	100	95.637	ENSSSCG00000005906	CPSF1	100	95.637	Sus_scrofa
ENSHGLG00000016139	CPSF1	96	78.011	ENSTRUG00000013134	cpsf1	99	78.151	Takifugu_rubripes
ENSHGLG00000016139	CPSF1	100	78.763	ENSTNIG00000014027	cpsf1	100	78.832	Tetraodon_nigroviridis
ENSHGLG00000016139	CPSF1	77	89.138	ENSTBEG00000001756	CPSF1	91	89.138	Tupaia_belangeri
ENSHGLG00000016139	CPSF1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSHGLG00000016139	CPSF1	97	96.915	ENSUAMG00000006476	CPSF1	98	96.915	Ursus_americanus
ENSHGLG00000016139	CPSF1	100	77.716	ENSXCOG00000003608	cpsf1	100	77.993	Xiphophorus_couchianus
ENSHGLG00000016139	CPSF1	100	77.232	ENSXMAG00000005798	cpsf1	100	77.439	Xiphophorus_maculatus