EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000018048 (Gene tree)
Gene ID: -
Gene Symbol: ZNF550
Alias: MGC41917
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 9110 bases
Position: chrJH602145.1:860802-869911
Accession: 101711648
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	1	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	2	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	3	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	4	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	5	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	6	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	7	8
ENSHGLP00000025331	zf-C2H2	PF00096.26	4.3e-35	8	8
ENSHGLP00000025331	zf-met	PF12874.7	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000025553	ZNF550-201	1206	XM_004866575	ENSHGLP00000025331	401 (aa)	XP_004866632	UPI00034F95BD

Gene Model

Click here to download ENSHGLG00000018048's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000018048's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000018048	ZNF550	55	40.000	ENSHGLG00000016810	OVOL2	52	40.000
ENSHGLG00000018048	ZNF550	58	38.496	ENSHGLG00000001087	-	51	38.496
ENSHGLG00000018048	ZNF550	97	55.505	ENSHGLG00000014546	-	97	55.505
ENSHGLG00000018048	ZNF550	59	47.853	ENSHGLG00000003903	ZNF574	70	37.826
ENSHGLG00000018048	ZNF550	64	46.784	ENSHGLG00000014609	-	76	46.784
ENSHGLG00000018048	ZNF550	59	54.872	ENSHGLG00000018394	-	98	54.872
ENSHGLG00000018048	ZNF550	57	47.917	ENSHGLG00000015628	ZNF628	58	47.917
ENSHGLG00000018048	ZNF550	56	51.339	ENSHGLG00000010373	ZNF768	50	55.556
ENSHGLG00000018048	ZNF550	59	44.538	ENSHGLG00000008901	ZFP64	69	35.965
ENSHGLG00000018048	ZNF550	97	56.388	ENSHGLG00000009291	-	94	56.388
ENSHGLG00000018048	ZNF550	98	50.282	ENSHGLG00000016406	-	100	50.282
ENSHGLG00000018048	ZNF550	97	56.388	ENSHGLG00000003200	ZNF226	99	56.388
ENSHGLG00000018048	ZNF550	88	57.014	ENSHGLG00000019054	-	98	57.014
ENSHGLG00000018048	ZNF550	97	53.202	ENSHGLG00000005975	-	98	53.202
ENSHGLG00000018048	ZNF550	64	55.172	ENSHGLG00000003657	ZNF235	63	55.172
ENSHGLG00000018048	ZNF550	57	45.714	ENSHGLG00000000648	ZNF236	59	45.714
ENSHGLG00000018048	ZNF550	97	53.182	ENSHGLG00000005362	-	92	53.182
ENSHGLG00000018048	ZNF550	56	44.872	ENSHGLG00000009439	SNAI2	50	44.872
ENSHGLG00000018048	ZNF550	66	36.842	ENSHGLG00000011504	ZNF319	88	37.778
ENSHGLG00000018048	ZNF550	98	52.863	ENSHGLG00000000969	ZNF81	97	52.863
ENSHGLG00000018048	ZNF550	98	35.556	ENSHGLG00000000728	ZNF202	63	35.556
ENSHGLG00000018048	ZNF550	65	51.786	ENSHGLG00000001150	-	99	51.786
ENSHGLG00000018048	ZNF550	97	49.425	ENSHGLG00000005282	ZNF2	99	49.565
ENSHGLG00000018048	ZNF550	97	52.062	ENSHGLG00000008584	ZNF667	88	52.062
ENSHGLG00000018048	ZNF550	61	34.000	ENSHGLG00000004173	GTF3A	83	34.000
ENSHGLG00000018048	ZNF550	60	45.455	ENSHGLG00000003010	PRDM5	76	38.428
ENSHGLG00000018048	ZNF550	63	35.802	ENSHGLG00000007674	ZNF423	77	35.802
ENSHGLG00000018048	ZNF550	64	30.435	ENSHGLG00000012086	ZNF784	85	30.435

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000018048	ZNF550	100	71.698	ENSG00000251369	ZNF550	100	71.698	Homo_sapiens
ENSHGLG00000018048	ZNF550	100	71.360	ENSCATG00000020915	ZNF550	100	71.360	Cercocebus_atys
ENSHGLG00000018048	ZNF550	88	80.593	ENSCLAG00000000250	ZNF550	95	80.593	Chinchilla_lanigera
ENSHGLG00000018048	ZNF550	98	71.220	ENSCSAG00000001629	ZNF550	100	71.220	Chlorocebus_sabaeus
ENSHGLG00000018048	ZNF550	100	71.599	ENSCANG00000033735	ZNF550	100	71.599	Colobus_angolensis_palliatus
ENSHGLG00000018048	ZNF550	83	61.127	ENSDNOG00000033330	-	99	61.127	Dasypus_novemcinctus
ENSHGLG00000018048	ZNF550	100	63.810	ENSFCAG00000034766	ZNF550	99	63.810	Felis_catus
ENSHGLG00000018048	ZNF550	100	71.462	ENSGGOG00000014068	ZNF550	100	71.462	Gorilla_gorilla
ENSHGLG00000018048	ZNF550	100	71.599	ENSMFAG00000036005	ZNF550	100	71.599	Macaca_fascicularis
ENSHGLG00000018048	ZNF550	100	71.122	ENSMMUG00000006122	ZNF550	100	71.122	Macaca_mulatta
ENSHGLG00000018048	ZNF550	100	71.599	ENSMNEG00000041366	ZNF550	100	71.599	Macaca_nemestrina
ENSHGLG00000018048	ZNF550	100	71.360	ENSMLEG00000034688	ZNF550	100	71.360	Mandrillus_leucophaeus
ENSHGLG00000018048	ZNF550	99	72.038	ENSMICG00000007561	ZNF550	99	72.038	Microcebus_murinus
ENSHGLG00000018048	ZNF550	100	64.762	ENSPPRG00000013475	ZNF550	99	64.762	Panthera_pardus
ENSHGLG00000018048	ZNF550	98	63.253	ENSPTIG00000018007	ZNF550	80	63.253	Panthera_tigris_altaica
ENSHGLG00000018048	ZNF550	100	71.462	ENSPTRG00000011560	ZNF550	100	71.462	Pan_troglodytes
ENSHGLG00000018048	ZNF550	100	71.599	ENSPANG00000030602	ZNF550	100	71.599	Papio_anubis
ENSHGLG00000018048	ZNF550	100	72.577	ENSPCOG00000018751	ZNF550	100	72.577	Propithecus_coquereli
ENSHGLG00000018048	ZNF550	99	64.423	ENSPVAG00000000908	ZNF550	100	64.423	Pteropus_vampyrus
ENSHGLG00000018048	ZNF550	100	71.599	ENSRBIG00000017275	ZNF550	100	71.599	Rhinopithecus_bieti
ENSHGLG00000018048	ZNF550	100	71.599	ENSRROG00000040063	ZNF550	100	71.599	Rhinopithecus_roxellana
ENSHGLG00000018048	ZNF550	98	68.116	ENSTTRG00000000293	ZNF550	100	68.116	Tursiops_truncatus