EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00000019152 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 28207 bases
Position: chrJH602198.1:1532101-1560307
Accession: 101709860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000026928	EST1	PF10374.9	4.8e-24	1	1
ENSHGLP00000026928	EST1_DNA_bind	PF10373.9	4.1e-40	1	2
ENSHGLP00000026928	EST1_DNA_bind	PF10373.9	4.1e-40	2	2
ENSHGLP00000026928	PIN_4	PF13638.6	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000027167	-	3861	XM_004871198	ENSHGLP00000026928	1018 (aa)	XP_004871255	A0A0P6JD71

Gene Model

Click here to download ENSHGLG00000019152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000019152's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000019152	SMG5	100	93.222	ENSG00000198952	SMG5	100	93.026	Homo_sapiens
ENSHGLG00000019152	SMG5	99	66.601	ENSAPOG00000019690	smg5	99	66.536	Acanthochromis_polyacanthus
ENSHGLG00000019152	SMG5	98	90.754	ENSAMEG00000014458	SMG5	100	90.553	Ailuropoda_melanoleuca
ENSHGLG00000019152	SMG5	99	64.532	ENSACIG00000001353	smg5	99	65.994	Amphilophus_citrinellus
ENSHGLG00000019152	SMG5	97	64.321	ENSAOCG00000019483	smg5	99	60.989	Amphiprion_ocellaris
ENSHGLG00000019152	SMG5	98	65.507	ENSAPEG00000022949	smg5	98	65.217	Amphiprion_percula
ENSHGLG00000019152	SMG5	99	65.728	ENSATEG00000005348	smg5	99	65.601	Anabas_testudineus
ENSHGLG00000019152	SMG5	98	76.923	ENSAPLG00000010263	SMG5	100	76.728	Anas_platyrhynchos
ENSHGLG00000019152	SMG5	100	92.731	ENSANAG00000032899	SMG5	100	92.534	Aotus_nancymaae
ENSHGLG00000019152	SMG5	99	64.080	ENSACLG00000009311	smg5	99	64.836	Astatotilapia_calliptera
ENSHGLG00000019152	SMG5	100	92.633	ENSBTAG00000009435	SMG5	100	92.436	Bos_taurus
ENSHGLG00000019152	SMG5	99	43.562	ENSBTAG00000021747	-	99	43.659	Bos_taurus
ENSHGLG00000019152	SMG5	100	92.731	ENSCJAG00000005684	SMG5	100	92.534	Callithrix_jacchus
ENSHGLG00000019152	SMG5	100	91.650	ENSCAFG00000016839	SMG5	100	91.159	Canis_familiaris
ENSHGLG00000019152	SMG5	100	91.650	ENSCAFG00020006061	SMG5	100	91.159	Canis_lupus_dingo
ENSHGLG00000019152	SMG5	100	92.338	ENSCHIG00000007709	SMG5	100	92.141	Capra_hircus
ENSHGLG00000019152	SMG5	99	44.129	ENSCHIG00000006323	-	99	43.976	Capra_hircus
ENSHGLG00000019152	SMG5	100	92.934	ENSTSYG00000004099	SMG5	100	92.738	Carlito_syrichta
ENSHGLG00000019152	SMG5	97	72.819	ENSCAPG00000003631	SMG5	100	73.854	Cavia_aperea
ENSHGLG00000019152	SMG5	100	93.811	ENSCPOG00000015696	SMG5	100	93.811	Cavia_porcellus
ENSHGLG00000019152	SMG5	100	93.026	ENSCCAG00000027409	SMG5	100	92.829	Cebus_capucinus
ENSHGLG00000019152	SMG5	100	93.222	ENSCATG00000030539	SMG5	100	93.026	Cercocebus_atys
ENSHGLG00000019152	SMG5	100	94.695	ENSCLAG00000003983	SMG5	100	94.695	Chinchilla_lanigera
ENSHGLG00000019152	SMG5	100	93.124	ENSCSAG00000002120	SMG5	100	92.927	Chlorocebus_sabaeus
ENSHGLG00000019152	SMG5	54	89.781	ENSCHOG00000008741	-	57	89.781	Choloepus_hoffmanni
ENSHGLG00000019152	SMG5	94	75.681	ENSCPBG00000025848	SMG5	100	76.186	Chrysemys_picta_bellii
ENSHGLG00000019152	SMG5	94	34.760	ENSCING00000008706	-	99	34.553	Ciona_intestinalis
ENSHGLG00000019152	SMG5	100	89.489	ENSCANG00000029208	SMG5	100	89.293	Colobus_angolensis_palliatus
ENSHGLG00000019152	SMG5	52	46.950	ENSCGRG00001000584	-	96	46.642	Cricetulus_griseus_chok1gshd
ENSHGLG00000019152	SMG5	100	89.686	ENSCGRG00001006336	Smg5	100	89.686	Cricetulus_griseus_chok1gshd
ENSHGLG00000019152	SMG5	98	89.638	ENSCGRG00000005111	Smg5	100	89.627	Cricetulus_griseus_crigri
ENSHGLG00000019152	SMG5	99	64.279	ENSCSEG00000014220	smg5	99	64.844	Cynoglossus_semilaevis
ENSHGLG00000019152	SMG5	99	59.688	ENSCVAG00000000529	smg5	99	60.214	Cyprinodon_variegatus
ENSHGLG00000019152	SMG5	92	35.084	ENSDNOG00000039862	-	100	34.352	Dasypus_novemcinctus
ENSHGLG00000019152	SMG5	100	88.507	ENSDNOG00000000051	SMG5	100	88.310	Dasypus_novemcinctus
ENSHGLG00000019152	SMG5	100	92.247	ENSDORG00000010382	Smg5	100	92.051	Dipodomys_ordii
ENSHGLG00000019152	SMG5	70	31.915	FBgn0019890	Smg5	65	31.915	Drosophila_melanogaster
ENSHGLG00000019152	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSHGLG00000019152	SMG5	90	47.021	ENSEBUG00000003739	smg5	98	46.941	Eptatretus_burgeri
ENSHGLG00000019152	SMG5	100	92.829	ENSEASG00005019122	SMG5	100	92.633	Equus_asinus_asinus
ENSHGLG00000019152	SMG5	100	92.829	ENSECAG00000001389	SMG5	100	92.633	Equus_caballus
ENSHGLG00000019152	SMG5	72	96.254	ENSEEUG00000012690	SMG5	73	96.254	Erinaceus_europaeus
ENSHGLG00000019152	SMG5	99	64.774	ENSELUG00000012585	smg5	99	64.649	Esox_lucius
ENSHGLG00000019152	SMG5	100	91.847	ENSFCAG00000011783	SMG5	100	91.650	Felis_catus
ENSHGLG00000019152	SMG5	58	79.139	ENSFALG00000001166	-	99	78.904	Ficedula_albicollis
ENSHGLG00000019152	SMG5	98	94.562	ENSFDAG00000017388	SMG5	100	94.562	Fukomys_damarensis
ENSHGLG00000019152	SMG5	97	60.786	ENSFHEG00000013939	smg5	95	66.773	Fundulus_heteroclitus
ENSHGLG00000019152	SMG5	99	60.774	ENSGMOG00000007310	smg5	99	60.866	Gadus_morhua
ENSHGLG00000019152	SMG5	99	75.862	ENSGALG00000029918	-	100	75.118	Gallus_gallus
ENSHGLG00000019152	SMG5	93	74.718	ENSGAFG00000021691	smg5	96	66.134	Gambusia_affinis
ENSHGLG00000019152	SMG5	99	61.392	ENSGACG00000013142	smg5	99	61.448	Gasterosteus_aculeatus
ENSHGLG00000019152	SMG5	100	77.462	ENSGAGG00000016131	SMG5	100	77.441	Gopherus_agassizii
ENSHGLG00000019152	SMG5	100	93.124	ENSGGOG00000010932	SMG5	100	92.927	Gorilla_gorilla
ENSHGLG00000019152	SMG5	99	64.061	ENSHBUG00000008654	smg5	99	64.259	Haplochromis_burtoni
ENSHGLG00000019152	SMG5	90	99.890	ENSHGLG00100015948	SMG5	99	99.890	Heterocephalus_glaber_male
ENSHGLG00000019152	SMG5	86	73.012	ENSHCOG00000010229	smg5	92	72.530	Hippocampus_comes
ENSHGLG00000019152	SMG5	50	59.032	ENSIPUG00000006624	Smg5	99	61.965	Ictalurus_punctatus
ENSHGLG00000019152	SMG5	100	93.418	ENSSTOG00000001780	SMG5	100	93.222	Ictidomys_tridecemlineatus
ENSHGLG00000019152	SMG5	100	90.304	ENSJJAG00000022763	Smg5	100	89.932	Jaculus_jaculus
ENSHGLG00000019152	SMG5	50	58.425	ENSKMAG00000014586	smg5	99	60.406	Kryptolebias_marmoratus
ENSHGLG00000019152	SMG5	99	65.927	ENSLBEG00000002145	smg5	99	65.767	Labrus_bergylta
ENSHGLG00000019152	SMG5	100	64.103	ENSLACG00000010521	SMG5	100	64.544	Latimeria_chalumnae
ENSHGLG00000019152	SMG5	96	78.454	ENSLOCG00000008380	smg5	99	62.203	Lepisosteus_oculatus
ENSHGLG00000019152	SMG5	100	92.043	ENSLAFG00000006241	SMG5	100	91.847	Loxodonta_africana
ENSHGLG00000019152	SMG5	100	93.124	ENSMFAG00000045357	SMG5	100	92.927	Macaca_fascicularis
ENSHGLG00000019152	SMG5	100	93.124	ENSMMUG00000000090	SMG5	100	92.927	Macaca_mulatta
ENSHGLG00000019152	SMG5	100	93.026	ENSMNEG00000044425	SMG5	100	92.829	Macaca_nemestrina
ENSHGLG00000019152	SMG5	100	86.888	ENSMLEG00000041192	SMG5	100	86.693	Mandrillus_leucophaeus
ENSHGLG00000019152	SMG5	99	60.660	ENSMAMG00000010683	smg5	100	60.487	Mastacembelus_armatus
ENSHGLG00000019152	SMG5	99	62.928	ENSMZEG00005015815	smg5	99	63.506	Maylandia_zebra
ENSHGLG00000019152	SMG5	63	58.383	ENSMZEG00005016543	smg5	100	58.974	Maylandia_zebra
ENSHGLG00000019152	SMG5	100	89.096	ENSMAUG00000010381	Smg5	100	89.194	Mesocricetus_auratus
ENSHGLG00000019152	SMG5	100	93.026	ENSMICG00000002257	SMG5	100	92.829	Microcebus_murinus
ENSHGLG00000019152	SMG5	100	88.943	ENSMOCG00000016590	Smg5	100	88.922	Microtus_ochrogaster
ENSHGLG00000019152	SMG5	99	57.758	ENSMMOG00000017199	smg5	99	58.997	Mola_mola
ENSHGLG00000019152	SMG5	86	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSHGLG00000019152	SMG5	87	88.076	ENSMODG00000016901	SMG5	98	87.852	Monodelphis_domestica
ENSHGLG00000019152	SMG5	92	36.098	ENSMODG00000004532	-	87	37.067	Monodelphis_domestica
ENSHGLG00000019152	SMG5	84	39.108	ENSMODG00000004735	-	86	39.200	Monodelphis_domestica
ENSHGLG00000019152	SMG5	97	34.353	ENSMODG00000004511	-	99	34.322	Monodelphis_domestica
ENSHGLG00000019152	SMG5	99	58.897	ENSMALG00000010375	smg5	99	59.091	Monopterus_albus
ENSHGLG00000019152	SMG5	100	89.489	MGP_CAROLIEiJ_G0025163	Smg5	100	98.324	Mus_caroli
ENSHGLG00000019152	SMG5	100	89.980	ENSMUSG00000001415	Smg5	99	98.324	Mus_musculus
ENSHGLG00000019152	SMG5	100	89.500	MGP_PahariEiJ_G0026606	Smg5	100	98.324	Mus_pahari
ENSHGLG00000019152	SMG5	100	89.686	MGP_SPRETEiJ_G0026104	Smg5	100	98.324	Mus_spretus
ENSHGLG00000019152	SMG5	94	90.336	ENSMPUG00000004546	SMG5	100	89.286	Mustela_putorius_furo
ENSHGLG00000019152	SMG5	100	91.487	ENSMLUG00000008518	SMG5	100	91.487	Myotis_lucifugus
ENSHGLG00000019152	SMG5	100	90.668	ENSNGAG00000020706	Smg5	100	90.668	Nannospalax_galili
ENSHGLG00000019152	SMG5	98	43.487	ENSNGAG00000012101	-	98	43.888	Nannospalax_galili
ENSHGLG00000019152	SMG5	96	63.343	ENSNBRG00000004332	smg5	97	64.365	Neolamprologus_brichardi
ENSHGLG00000019152	SMG5	100	92.829	ENSNLEG00000012439	SMG5	100	92.633	Nomascus_leucogenys
ENSHGLG00000019152	SMG5	100	86.346	ENSMEUG00000012834	SMG5	100	84.872	Notamacropus_eugenii
ENSHGLG00000019152	SMG5	100	91.061	ENSOPRG00000009152	SMG5	100	90.864	Ochotona_princeps
ENSHGLG00000019152	SMG5	100	93.713	ENSODEG00000012237	SMG5	100	93.713	Octodon_degus
ENSHGLG00000019152	SMG5	89	40.830	ENSOCUG00000023338	-	99	40.284	Oryctolagus_cuniculus
ENSHGLG00000019152	SMG5	98	92.354	ENSOCUG00000012886	SMG5	100	92.153	Oryctolagus_cuniculus
ENSHGLG00000019152	SMG5	99	64.494	ENSORLG00020013127	smg5	99	65.103	Oryzias_latipes_hni
ENSHGLG00000019152	SMG5	99	64.306	ENSORLG00015019014	smg5	99	65.595	Oryzias_latipes_hsok
ENSHGLG00000019152	SMG5	82	59.506	ENSOMEG00000021330	smg5	92	59.315	Oryzias_melastigma
ENSHGLG00000019152	SMG5	100	91.945	ENSOGAG00000004966	SMG5	100	91.749	Otolemur_garnettii
ENSHGLG00000019152	SMG5	99	44.184	ENSOARG00000011963	-	99	44.031	Ovis_aries
ENSHGLG00000019152	SMG5	100	92.436	ENSOARG00000005778	SMG5	100	92.240	Ovis_aries
ENSHGLG00000019152	SMG5	100	93.026	ENSPPAG00000011996	SMG5	100	92.829	Pan_paniscus
ENSHGLG00000019152	SMG5	98	91.952	ENSPPRG00000011901	SMG5	100	91.449	Panthera_pardus
ENSHGLG00000019152	SMG5	99	83.996	ENSPTIG00000007892	SMG5	98	84.328	Panthera_tigris_altaica
ENSHGLG00000019152	SMG5	100	93.222	ENSPTRG00000049282	-	100	93.026	Pan_troglodytes
ENSHGLG00000019152	SMG5	100	93.222	ENSPTRG00000023925	SMG5	100	93.026	Pan_troglodytes
ENSHGLG00000019152	SMG5	100	93.222	ENSPANG00000011201	SMG5	100	93.026	Papio_anubis
ENSHGLG00000019152	SMG5	99	66.113	ENSPKIG00000009402	smg5	99	66.732	Paramormyrops_kingsleyae
ENSHGLG00000019152	SMG5	98	78.515	ENSPSIG00000015198	SMG5	100	78.094	Pelodiscus_sinensis
ENSHGLG00000019152	SMG5	99	60.606	ENSPMGG00000010465	smg5	99	60.478	Periophthalmus_magnuspinnatus
ENSHGLG00000019152	SMG5	100	89.882	ENSPEMG00000001819	Smg5	100	89.882	Peromyscus_maniculatus_bairdii
ENSHGLG00000019152	SMG5	99	50.530	ENSPMAG00000000410	smg5	100	50.047	Petromyzon_marinus
ENSHGLG00000019152	SMG5	100	87.439	ENSPCIG00000018938	SMG5	100	87.242	Phascolarctos_cinereus
ENSHGLG00000019152	SMG5	50	59.410	ENSPFOG00000010191	smg5	99	61.483	Poecilia_formosa
ENSHGLG00000019152	SMG5	50	58.932	ENSPLAG00000009332	smg5	99	61.305	Poecilia_latipinna
ENSHGLG00000019152	SMG5	99	64.813	ENSPMEG00000014105	smg5	99	65.330	Poecilia_mexicana
ENSHGLG00000019152	SMG5	93	74.944	ENSPREG00000017713	smg5	99	61.573	Poecilia_reticulata
ENSHGLG00000019152	SMG5	100	93.320	ENSPPYG00000000723	SMG5	100	93.124	Pongo_abelii
ENSHGLG00000019152	SMG5	75	95.580	ENSPCAG00000008412	SMG5	81	95.580	Procavia_capensis
ENSHGLG00000019152	SMG5	100	93.026	ENSPCOG00000004741	SMG5	100	92.829	Propithecus_coquereli
ENSHGLG00000019152	SMG5	100	84.676	ENSPVAG00000016748	SMG5	100	84.578	Pteropus_vampyrus
ENSHGLG00000019152	SMG5	99	58.891	ENSPNYG00000013397	smg5	99	60.762	Pundamilia_nyererei
ENSHGLG00000019152	SMG5	99	62.170	ENSPNAG00000028363	smg5	99	62.963	Pygocentrus_nattereri
ENSHGLG00000019152	SMG5	100	90.079	ENSRNOG00000019590	Smg5	100	90.079	Rattus_norvegicus
ENSHGLG00000019152	SMG5	100	93.026	ENSRBIG00000027428	SMG5	100	92.829	Rhinopithecus_bieti
ENSHGLG00000019152	SMG5	100	92.927	ENSRROG00000030035	SMG5	100	92.731	Rhinopithecus_roxellana
ENSHGLG00000019152	SMG5	100	92.829	ENSSBOG00000033339	SMG5	100	92.633	Saimiri_boliviensis_boliviensis
ENSHGLG00000019152	SMG5	88	39.314	ENSSHAG00000000561	-	86	39.314	Sarcophilus_harrisii
ENSHGLG00000019152	SMG5	64	40.000	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSHGLG00000019152	SMG5	98	86.500	ENSSHAG00000014163	SMG5	100	86.300	Sarcophilus_harrisii
ENSHGLG00000019152	SMG5	99	33.430	ENSSHAG00000009572	-	78	43.655	Sarcophilus_harrisii
ENSHGLG00000019152	SMG5	99	65.861	ENSSFOG00015024175	smg5	99	65.891	Scleropages_formosus
ENSHGLG00000019152	SMG5	92	71.163	ENSSMAG00000013059	smg5	99	61.285	Scophthalmus_maximus
ENSHGLG00000019152	SMG5	92	75.982	ENSSDUG00000007122	smg5	99	61.150	Seriola_dumerili
ENSHGLG00000019152	SMG5	99	59.139	ENSSLDG00000011418	smg5	99	61.279	Seriola_lalandi_dorsalis
ENSHGLG00000019152	SMG5	90	80.631	ENSSARG00000012484	SMG5	100	80.305	Sorex_araneus
ENSHGLG00000019152	SMG5	94	75.684	ENSSPUG00000002260	SMG5	100	75.378	Sphenodon_punctatus
ENSHGLG00000019152	SMG5	92	76.212	ENSSPAG00000014266	smg5	98	65.856	Stegastes_partitus
ENSHGLG00000019152	SMG5	100	93.418	ENSSSCG00000006490	-	100	93.222	Sus_scrofa
ENSHGLG00000019152	SMG5	99	72.271	ENSSSCG00000039308	-	100	72.173	Sus_scrofa
ENSHGLG00000019152	SMG5	99	78.480	ENSTGUG00000003748	-	100	78.265	Taeniopygia_guttata
ENSHGLG00000019152	SMG5	99	63.908	ENSTRUG00000012580	smg5	99	63.305	Takifugu_rubripes
ENSHGLG00000019152	SMG5	99	64.403	ENSTNIG00000010303	smg5	99	64.175	Tetraodon_nigroviridis
ENSHGLG00000019152	SMG5	60	98.030	ENSTBEG00000002777	SMG5	60	98.030	Tupaia_belangeri
ENSHGLG00000019152	SMG5	100	88.016	ENSTTRG00000001401	SMG5	100	87.819	Tursiops_truncatus
ENSHGLG00000019152	SMG5	100	91.454	ENSUAMG00000013721	SMG5	100	90.963	Ursus_americanus
ENSHGLG00000019152	SMG5	98	86.760	ENSUMAG00000018041	SMG5	99	84.394	Ursus_maritimus
ENSHGLG00000019152	SMG5	98	83.384	ENSVPAG00000009446	SMG5	99	83.182	Vicugna_pacos
ENSHGLG00000019152	SMG5	100	91.552	ENSVVUG00000005887	SMG5	100	91.061	Vulpes_vulpes
ENSHGLG00000019152	SMG5	77	64.950	ENSXETG00000033791	SMG5	99	64.654	Xenopus_tropicalis
ENSHGLG00000019152	SMG5	84	76.596	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSHGLG00000019152	SMG5	93	74.266	ENSXMAG00000013499	smg5	99	65.318	Xiphophorus_maculatus