EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHGLG00000019582 (Gene tree)
Gene ID
-
Gene Symbol
-
Alias
-
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Heterocephalus_glaber_female
Status
putative
Strand
Minus strand
Length
19581 bases
Position
chrJH602208.1:3762087-3781667
Accession
101700790
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHGLP00000027538Smg4_UPF3PF03467.152.2e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHGLT00000027781-2363XM_004872168ENSHGLP00000027538470 (aa)XP_004872225UPI00034F9971
Gene Model
Click here to download ENSHGLG00000019582's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000019582's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHGLG00000019582-8687.065ENSHGLG00000011189-9688.060
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHGLG00000019582-10093.404ENSG00000125351UPF3B10093.404Homo_sapiens
ENSHGLG00000019582-8450.244ENSG00000169062UPF3A8649.199Homo_sapiens
ENSHGLG00000019582-9657.516ENSAPOG00000012775upf3b9657.516Acanthochromis_polyacanthus
ENSHGLG00000019582-9248.000ENSAMEG00000004259UPF3A9541.242Ailuropoda_melanoleuca
ENSHGLG00000019582-10094.468ENSAMEG00000000163UPF3B10094.468Ailuropoda_melanoleuca
ENSHGLG00000019582-9453.215ENSACIG00000013582upf3b9451.868Amphilophus_citrinellus
ENSHGLG00000019582-9656.427ENSAOCG00000000706upf3b9756.156Amphiprion_ocellaris
ENSHGLG00000019582-9657.734ENSAPEG00000005545upf3b9657.734Amphiprion_percula
ENSHGLG00000019582-9458.628ENSATEG00000018742upf3b9459.603Anabas_testudineus
ENSHGLG00000019582-8552.670ENSACAG00000001540UPF3A9252.897Anolis_carolinensis
ENSHGLG00000019582-9170.115ENSACAG00000003625UPF3B9967.227Anolis_carolinensis
ENSHGLG00000019582-5769.517ENSANAG00000033169-9567.883Aotus_nancymaae
ENSHGLG00000019582-10088.085ENSANAG00000025598-10089.781Aotus_nancymaae
ENSHGLG00000019582-8443.596ENSANAG00000021713UPF3A8642.723Aotus_nancymaae
ENSHGLG00000019582-10093.830ENSANAG00000021894-10095.539Aotus_nancymaae
ENSHGLG00000019582-9657.050ENSACLG00000001649upf3b9757.701Astatotilapia_calliptera
ENSHGLG00000019582-5760.854ENSAMXG00000000199upf3b8860.854Astyanax_mexicanus
ENSHGLG00000019582-6996.283ENSBTAG00000035615UPF3B10096.283Bos_taurus
ENSHGLG00000019582-8449.015ENSCJAG00000019102UPF3A8643.023Callithrix_jacchus
ENSHGLG00000019582-10093.404ENSCJAG00000004975UPF3B10095.539Callithrix_jacchus
ENSHGLG00000019582-9893.464ENSCAFG00000018426UPF3B10093.464Canis_familiaris
ENSHGLG00000019582-8645.894ENSCAFG00000006504UPF3A9042.523Canis_familiaris
ENSHGLG00000019582-8645.894ENSCAFG00020014268UPF3A8742.523Canis_lupus_dingo
ENSHGLG00000019582-10091.489ENSCAFG00020004074UPF3B10092.308Canis_lupus_dingo
ENSHGLG00000019582-9890.678ENSCHIG00000018011-10095.911Capra_hircus
ENSHGLG00000019582-9063.294ENSCHIG00000011454-9860.889Capra_hircus
ENSHGLG00000019582-10090.890ENSCHIG00000000247-10090.890Capra_hircus
ENSHGLG00000019582-10094.043ENSTSYG00000014690UPF3B10094.043Carlito_syrichta
ENSHGLG00000019582-8449.257ENSCCAG00000018406UPF3A8643.981Cebus_capucinus
ENSHGLG00000019582-9958.333ENSCCAG00000029813-9957.849Cebus_capucinus
ENSHGLG00000019582-7174.648ENSCCAG00000021964-10074.648Cebus_capucinus
ENSHGLG00000019582-10093.404ENSCATG00000017506UPF3B10095.911Cercocebus_atys
ENSHGLG00000019582-8948.611ENSCATG00000029733UPF3A8848.409Cercocebus_atys
ENSHGLG00000019582-10095.319ENSCLAG00000003260UPF3B10095.319Chinchilla_lanigera
ENSHGLG00000019582-8948.157ENSCSAG00000017388UPF3A8548.485Chlorocebus_sabaeus
ENSHGLG00000019582-10090.890ENSCSAG00000018348UPF3B10090.890Chlorocebus_sabaeus
ENSHGLG00000019582-9965.272ENSCPBG00000020685UPF3B9965.272Chrysemys_picta_bellii
ENSHGLG00000019582-7195.911ENSCANG00000029220UPF3B10095.911Colobus_angolensis_palliatus
ENSHGLG00000019582-10082.415ENSCGRG00001006858-10082.627Cricetulus_griseus_chok1gshd
ENSHGLG00000019582-7582.051ENSCGRG00001013643-9479.251Cricetulus_griseus_chok1gshd
ENSHGLG00000019582-8984.286ENSCGRG00000007627Upf3b10084.524Cricetulus_griseus_crigri
ENSHGLG00000019582-9356.951ENSCSEG00000002046upf3b9057.623Cynoglossus_semilaevis
ENSHGLG00000019582-9554.684ENSCVAG00000005030upf3b9655.459Cyprinodon_variegatus
ENSHGLG00000019582-9757.294ENSDARG00000000489upf3b9757.717Danio_rerio
ENSHGLG00000019582-10089.855ENSDNOG00000008665UPF3B10089.855Dasypus_novemcinctus
ENSHGLG00000019582-7651.374ENSDNOG00000034391UPF3A7153.939Dasypus_novemcinctus
ENSHGLG00000019582-10087.234ENSDORG00000006077Upf3b10087.234Dipodomys_ordii
ENSHGLG00000019582-8743.187ENSETEG00000010110UPF3A9038.190Echinops_telfairi
ENSHGLG00000019582-9148.864ENSEASG00005021884UPF3A8843.218Equus_asinus_asinus
ENSHGLG00000019582-9992.324ENSEASG00005012919UPF3B10092.647Equus_asinus_asinus
ENSHGLG00000019582-9149.091ENSECAG00000017141UPF3A8843.448Equus_caballus
ENSHGLG00000019582-9992.324ENSECAG00000016947UPF3B10092.647Equus_caballus
ENSHGLG00000019582-10052.695ENSELUG00000020389upf3b10053.000Esox_lucius
ENSHGLG00000019582-8948.624ENSFCAG00000014602UPF3A8744.159Felis_catus
ENSHGLG00000019582-10093.008ENSFCAG00000004388UPF3B10093.644Felis_catus
ENSHGLG00000019582-9964.215ENSFALG00000001569UPF3B9964.016Ficedula_albicollis
ENSHGLG00000019582-10097.447ENSFDAG00000018869UPF3B10097.447Fukomys_damarensis
ENSHGLG00000019582-9353.333ENSFHEG00000017895upf3b9652.174Fundulus_heteroclitus
ENSHGLG00000019582-9354.989ENSGMOG00000001621upf3b9355.654Gadus_morhua
ENSHGLG00000019582-9170.805ENSGALG00000008618UPF3B9968.685Gallus_gallus
ENSHGLG00000019582-9654.626ENSGAFG00000000829upf3b9655.531Gambusia_affinis
ENSHGLG00000019582-9255.481ENSGACG00000017435upf3b9466.544Gasterosteus_aculeatus
ENSHGLG00000019582-9967.573ENSGAGG00000001219UPF3B9967.573Gopherus_agassizii
ENSHGLG00000019582-8450.000ENSGGOG00000015428UPF3A8648.970Gorilla_gorilla
ENSHGLG00000019582-10093.404ENSGGOG00000023995UPF3B10095.911Gorilla_gorilla
ENSHGLG00000019582-8841.549ENSGGOG00000043074-9334.945Gorilla_gorilla
ENSHGLG00000019582-8342.680ENSGGOG00000041219-9235.666Gorilla_gorilla
ENSHGLG00000019582-9657.050ENSHBUG00000017393upf3b9757.701Haplochromis_burtoni
ENSHGLG00000019582-10097.234ENSHGLG00100002042-10097.234Heterocephalus_glaber_male
ENSHGLG00000019582-8686.816ENSHGLG00100001889-9687.313Heterocephalus_glaber_male
ENSHGLG00000019582-10054.564ENSHCOG00000017004upf3b10054.564Hippocampus_comes
ENSHGLG00000019582-10055.876ENSIPUG00000019249upf3b10056.701Ictalurus_punctatus
ENSHGLG00000019582-10092.340ENSSTOG00000001101UPF3B10092.340Ictidomys_tridecemlineatus
ENSHGLG00000019582-10088.347ENSJJAG00000000053Upf3b10088.559Jaculus_jaculus
ENSHGLG00000019582-9656.769ENSKMAG00000020300upf3b9657.081Kryptolebias_marmoratus
ENSHGLG00000019582-6064.808ENSLBEG00000028689upf3b5964.808Labrus_bergylta
ENSHGLG00000019582-6536.257ENSLACG00000006645UPF3A7567.308Latimeria_chalumnae
ENSHGLG00000019582-9061.538ENSLACG00000008691UPF3B10058.871Latimeria_chalumnae
ENSHGLG00000019582-9052.941ENSLOCG00000002665upf3a9152.941Lepisosteus_oculatus
ENSHGLG00000019582-5174.380ENSLOCG00000015238upf3b9957.725Lepisosteus_oculatus
ENSHGLG00000019582-10092.340ENSLAFG00000001267UPF3B10092.340Loxodonta_africana
ENSHGLG00000019582-8944.076ENSLAFG00000023358UPF3A9943.705Loxodonta_africana
ENSHGLG00000019582-10093.191ENSMFAG00000045414UPF3B10095.911Macaca_fascicularis
ENSHGLG00000019582-8149.370ENSMMUG00000007449UPF3A8350.128Macaca_mulatta
ENSHGLG00000019582-10093.191ENSMMUG00000020222UPF3B10095.911Macaca_mulatta
ENSHGLG00000019582-10093.191ENSMNEG00000039794UPF3B10095.911Macaca_nemestrina
ENSHGLG00000019582-8748.000ENSMNEG00000036402UPF3A7949.873Macaca_nemestrina
ENSHGLG00000019582-8747.765ENSMLEG00000014726UPF3A8949.620Mandrillus_leucophaeus
ENSHGLG00000019582-10093.404ENSMLEG00000010999UPF3B10095.911Mandrillus_leucophaeus
ENSHGLG00000019582-9656.833ENSMZEG00005007871upf3b9757.484Maylandia_zebra
ENSHGLG00000019582-8168.814ENSMGAG00000007728UPF3B9870.026Meleagris_gallopavo
ENSHGLG00000019582-8551.442ENSMGAG00000014837UPF3A9850.358Meleagris_gallopavo
ENSHGLG00000019582-10082.839ENSMAUG00000008705Upf3b10083.051Mesocricetus_auratus
ENSHGLG00000019582-7195.556ENSMICG00000001743UPF3B10095.556Microcebus_murinus
ENSHGLG00000019582-10083.711ENSMOCG00000017893Upf3b10083.918Microtus_ochrogaster
ENSHGLG00000019582-9754.818ENSMMOG00000004183upf3b9655.724Mola_mola
ENSHGLG00000019582-8974.178ENSMODG00000010232UPF3B9974.353Monodelphis_domestica
ENSHGLG00000019582-8852.103ENSMODG00000003159UPF3A9651.276Monodelphis_domestica
ENSHGLG00000019582-5967.021ENSMALG00000008042upf3b9655.603Monopterus_albus
ENSHGLG00000019582-10082.839MGP_CAROLIEiJ_G0032999Upf3b10083.051Mus_caroli
ENSHGLG00000019582-10083.475ENSMUSG00000036572Upf3b10083.686Mus_musculus
ENSHGLG00000019582-10082.415MGP_PahariEiJ_G0031543Upf3b10082.627Mus_pahari
ENSHGLG00000019582-10083.475MGP_SPRETEiJ_G0034152Upf3b10083.686Mus_spretus
ENSHGLG00000019582-9893.682ENSMPUG00000001531UPF3B10093.682Mustela_putorius_furo
ENSHGLG00000019582-8946.047ENSMPUG00000009139UPF3A8942.601Mustela_putorius_furo
ENSHGLG00000019582-10093.617ENSMLUG00000010821UPF3B10093.617Myotis_lucifugus
ENSHGLG00000019582-8349.878ENSMLUG00000015905UPF3A9344.724Myotis_lucifugus
ENSHGLG00000019582-10083.686ENSNGAG00000008231Upf3b10084.958Nannospalax_galili
ENSHGLG00000019582-9793.435ENSNLEG00000014897UPF3B10093.404Nomascus_leucogenys
ENSHGLG00000019582-8449.756ENSNLEG00000007563UPF3A8847.511Nomascus_leucogenys
ENSHGLG00000019582-6582.581ENSMEUG00000015615UPF3B8182.692Notamacropus_eugenii
ENSHGLG00000019582-10089.574ENSODEG00000002186-10089.362Octodon_degus
ENSHGLG00000019582-10057.350ENSONIG00000002536upf3b10057.764Oreochromis_niloticus
ENSHGLG00000019582-7945.000ENSOANG00000006985-7450.836Ornithorhynchus_anatinus
ENSHGLG00000019582-10090.890ENSOCUG00000010213UPF3B10090.890Oryctolagus_cuniculus
ENSHGLG00000019582-8452.300ENSORLG00000010911upf3a8346.715Oryzias_latipes
ENSHGLG00000019582-9456.703ENSORLG00000001026upf3b9556.512Oryzias_latipes
ENSHGLG00000019582-8748.730ENSORLG00020014317upf3a8450.952Oryzias_latipes_hni
ENSHGLG00000019582-9456.018ENSORLG00020003758upf3b9556.044Oryzias_latipes_hni
ENSHGLG00000019582-9456.484ENSORLG00015012954upf3b9556.291Oryzias_latipes_hsok
ENSHGLG00000019582-8358.955ENSOMEG00000014736upf3b9854.352Oryzias_melastigma
ENSHGLG00000019582-9779.783ENSOGAG00000033003-10080.217Otolemur_garnettii
ENSHGLG00000019582-10094.043ENSOGAG00000004643-10094.043Otolemur_garnettii
ENSHGLG00000019582-10090.329ENSOARG00000016051-10090.329Ovis_aries
ENSHGLG00000019582-9048.506ENSOARG00000009004UPF3A8747.816Ovis_aries
ENSHGLG00000019582-9069.031ENSOARG00000007869-9966.274Ovis_aries
ENSHGLG00000019582-8449.756ENSPPAG00000042267UPF3A8648.357Pan_paniscus
ENSHGLG00000019582-10093.404ENSPPAG00000040390UPF3B10095.911Pan_paniscus
ENSHGLG00000019582-9447.289ENSPPRG00000025062UPF3A8744.393Panthera_pardus
ENSHGLG00000019582-10094.043ENSPPRG00000023536UPF3B10094.043Panthera_pardus
ENSHGLG00000019582-10089.463ENSPTIG00000015264UPF3B10096.654Panthera_tigris_altaica
ENSHGLG00000019582-8341.353ENSPTRG00000051640-9035.507Pan_troglodytes
ENSHGLG00000019582-9337.162ENSPTRG00000041835-9236.782Pan_troglodytes
ENSHGLG00000019582-9336.486ENSPTRG00000041187-9237.471Pan_troglodytes
ENSHGLG00000019582-8449.512ENSPTRG00000006073UPF3A8648.122Pan_troglodytes
ENSHGLG00000019582-10093.404ENSPTRG00000022228UPF3B10095.911Pan_troglodytes
ENSHGLG00000019582-10093.404ENSPANG00000000900UPF3B10095.911Papio_anubis
ENSHGLG00000019582-8948.499ENSPANG00000004346UPF3A8548.821Papio_anubis
ENSHGLG00000019582-10055.901ENSPKIG00000019226upf3b9364.557Paramormyrops_kingsleyae
ENSHGLG00000019582-5673.507ENSPSIG00000005833UPF3B9075.294Pelodiscus_sinensis
ENSHGLG00000019582-8552.745ENSPSIG00000007468UPF3A9952.123Pelodiscus_sinensis
ENSHGLG00000019582-5965.714ENSPMGG00000016067upf3b9565.468Periophthalmus_magnuspinnatus
ENSHGLG00000019582-10085.835ENSPEMG00000012352Upf3b10086.047Peromyscus_maniculatus_bairdii
ENSHGLG00000019582-9050.172ENSPCIG00000019590-7266.265Phascolarctos_cinereus
ENSHGLG00000019582-9270.203ENSPCIG00000028914UPF3B9667.974Phascolarctos_cinereus
ENSHGLG00000019582-9656.167ENSPLAG00000019922upf3b9657.050Poecilia_latipinna
ENSHGLG00000019582-8550.608ENSPLAG00000011960upf3a8451.084Poecilia_latipinna
ENSHGLG00000019582-9656.167ENSPLAG00000005105upf3b9657.050Poecilia_latipinna
ENSHGLG00000019582-9656.388ENSPMEG00000023532upf3b9657.582Poecilia_mexicana
ENSHGLG00000019582-6895.556ENSPPYG00000020675-9695.556Pongo_abelii
ENSHGLG00000019582-8449.756ENSPPYG00000005536UPF3A8648.741Pongo_abelii
ENSHGLG00000019582-10088.406ENSPCAG00000009464UPF3B10088.406Procavia_capensis
ENSHGLG00000019582-5352.174ENSPCAG00000013124UPF3A5649.643Procavia_capensis
ENSHGLG00000019582-10093.843ENSPCOG00000021960UPF3B10096.296Propithecus_coquereli
ENSHGLG00000019582-10077.640ENSPVAG00000014075UPF3B10077.640Pteropus_vampyrus
ENSHGLG00000019582-8646.604ENSPVAG00000005656UPF3A9040.312Pteropus_vampyrus
ENSHGLG00000019582-9656.550ENSPNYG00000009846upf3b9657.734Pundamilia_nyererei
ENSHGLG00000019582-10055.943ENSPNAG00000021528upf3b10065.934Pygocentrus_nattereri
ENSHGLG00000019582-10084.110ENSRNOG00000039994Upf3b10084.322Rattus_norvegicus
ENSHGLG00000019582-8747.877ENSRBIG00000034007UPF3A9148.478Rhinopithecus_bieti
ENSHGLG00000019582-8291.927ENSRBIG00000037219UPF3B9992.167Rhinopithecus_bieti
ENSHGLG00000019582-8748.113ENSRROG00000012212UPF3A8050.254Rhinopithecus_roxellana
ENSHGLG00000019582-10093.404ENSRROG00000041031UPF3B10095.911Rhinopithecus_roxellana
ENSHGLG00000019582-10093.191ENSSBOG00000019740UPF3B10095.167Saimiri_boliviensis_boliviensis
ENSHGLG00000019582-7647.011ENSSBOG00000029989UPF3A8042.033Saimiri_boliviensis_boliviensis
ENSHGLG00000019582-8751.522ENSSHAG00000009895UPF3A9850.698Sarcophilus_harrisii
ENSHGLG00000019582-8773.923ENSSHAG00000008634UPF3B9969.280Sarcophilus_harrisii
ENSHGLG00000019582-10058.700ENSSFOG00015005614upf3b10060.042Scleropages_formosus
ENSHGLG00000019582-9356.347ENSSMAG00000012913upf3b8467.279Scophthalmus_maximus
ENSHGLG00000019582-8443.704ENSSDUG00000009680upf3a8348.832Seriola_dumerili
ENSHGLG00000019582-9650.433ENSSDUG00000005682upf3b9751.620Seriola_dumerili
ENSHGLG00000019582-9654.329ENSSLDG00000003130upf3b9752.052Seriola_lalandi_dorsalis
ENSHGLG00000019582-8138.619ENSSARG00000007262UPF3A9237.084Sorex_araneus
ENSHGLG00000019582-8980.415ENSSARG00000004147UPF3B10082.028Sorex_araneus
ENSHGLG00000019582-9964.730ENSSPUG00000013082UPF3B9963.354Sphenodon_punctatus
ENSHGLG00000019582-9655.895ENSSPAG00000009989upf3b9657.081Stegastes_partitus
ENSHGLG00000019582-9344.156ENSSSCG00000024679UPF3A5550.179Sus_scrofa
ENSHGLG00000019582-10093.404ENSSSCG00000012617UPF3B10093.404Sus_scrofa
ENSHGLG00000019582-8970.023ENSTGUG00000003413UPF3B9970.023Taeniopygia_guttata
ENSHGLG00000019582-8354.815ENSTGUG00000009493UPF3A9953.808Taeniopygia_guttata
ENSHGLG00000019582-8756.867ENSTRUG00000010645upf3b9855.484Takifugu_rubripes
ENSHGLG00000019582-9453.215ENSTNIG00000015763upf3b9551.991Tetraodon_nigroviridis
ENSHGLG00000019582-10075.776ENSTBEG00000003229UPF3B10075.362Tupaia_belangeri
ENSHGLG00000019582-6641.270ENSTBEG00000017186-6042.857Tupaia_belangeri
ENSHGLG00000019582-7547.297ENSTTRG00000015414UPF3A7339.889Tursiops_truncatus
ENSHGLG00000019582-10090.254ENSUAMG00000024565UPF3B10090.890Ursus_americanus
ENSHGLG00000019582-9385.991ENSUMAG00000002150UPF3B9985.345Ursus_maritimus
ENSHGLG00000019582-8745.742ENSVPAG00000003525UPF3A9844.526Vicugna_pacos
ENSHGLG00000019582-8491.951ENSVPAG00000009971UPF3B10091.951Vicugna_pacos
ENSHGLG00000019582-10091.702ENSVVUG00000011594UPF3B10093.162Vulpes_vulpes
ENSHGLG00000019582-9143.182ENSVVUG00000013538UPF3A8740.576Vulpes_vulpes
ENSHGLG00000019582-8344.963ENSXETG00000002572upf3a9045.343Xenopus_tropicalis
ENSHGLG00000019582-8756.190ENSXETG00000007440upf3b7876.111Xenopus_tropicalis
ENSHGLG00000019582-9652.643ENSXCOG00000016586upf3b9764.929Xiphophorus_couchianus
ENSHGLG00000019582-9456.404ENSXMAG00000013680upf3b9456.629Xiphophorus_maculatus

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