EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00000020104 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Heterocephalus_glaber_female
Status: putative
Strand: Minus strand
Length: 1113 bases
Position: chrJH602090.1:14646891-14648003
Accession: 101706888
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00000027987	RRM_5	PF13893.6	1.1e-12	1	3
ENSHGLP00000027987	RRM_5	PF13893.6	1.1e-12	2	3
ENSHGLP00000027987	RRM_5	PF13893.6	1.1e-12	3	3
ENSHGLP00000027987	RRM_1	PF00076.22	5.4e-83	1	4
ENSHGLP00000027987	RRM_1	PF00076.22	5.4e-83	2	4
ENSHGLP00000027987	RRM_1	PF00076.22	5.4e-83	3	4
ENSHGLP00000027987	RRM_1	PF00076.22	5.4e-83	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00000028314	PABPC4L-201	1113	XM_004854970	ENSHGLP00000027987	370 (aa)	XP_004855027	G5BK59

Gene Model

Click here to download ENSHGLG00000020104's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00000020104's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00000020104	PABPC4L	97	41.081	ENSHGLG00000012360	SF3B4	60	41.081
ENSHGLG00000020104	PABPC4L	99	69.459	ENSHGLG00000007713	-	60	69.459
ENSHGLG00000020104	PABPC4L	98	31.250	ENSHGLG00000008478	-	92	31.250
ENSHGLG00000020104	PABPC4L	61	42.105	ENSHGLG00000006552	RBM3	56	41.026
ENSHGLG00000020104	PABPC4L	81	37.662	ENSHGLG00000011055	RBMX	80	37.662
ENSHGLG00000020104	PABPC4L	96	61.224	ENSHGLG00000019762	-	98	61.224
ENSHGLG00000020104	PABPC4L	99	31.169	ENSHGLG00000000485	ELAVL4	73	31.169
ENSHGLG00000020104	PABPC4L	98	38.824	ENSHGLG00000013273	-	51	36.364
ENSHGLG00000020104	PABPC4L	96	61.224	ENSHGLG00000019668	-	98	61.224
ENSHGLG00000020104	PABPC4L	91	68.947	ENSHGLG00000003042	-	52	68.947
ENSHGLG00000020104	PABPC4L	98	62.259	ENSHGLG00000008434	PABPC1L	62	62.259
ENSHGLG00000020104	PABPC4L	99	71.622	ENSHGLG00000011162	PABPC4	61	71.622

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00000020104	PABPC4L	99	84.011	ENSG00000254535	PABPC4L	99	84.011	Homo_sapiens
ENSHGLG00000020104	PABPC4L	99	83.469	ENSANAG00000017199	PABPC4L	86	83.469	Aotus_nancymaae
ENSHGLG00000020104	PABPC4L	100	81.351	ENSBTAG00000046902	PABPC4L	100	81.351	Bos_taurus
ENSHGLG00000020104	PABPC4L	99	83.469	ENSCJAG00000045332	PABPC4L	86	83.469	Callithrix_jacchus
ENSHGLG00000020104	PABPC4L	99	74.457	ENSCAFG00020019182	-	54	74.457	Canis_lupus_dingo
ENSHGLG00000020104	PABPC4L	100	81.351	ENSCHIG00000007231	PABPC4L	100	81.351	Capra_hircus
ENSHGLG00000020104	PABPC4L	98	83.234	ENSCAPG00000000555	PABPC4L	100	83.234	Cavia_aperea
ENSHGLG00000020104	PABPC4L	99	80.488	ENSCPOG00000033167	PABPC4L	100	80.488	Cavia_porcellus
ENSHGLG00000020104	PABPC4L	99	83.198	ENSCCAG00000031681	PABPC4L	86	83.198	Cebus_capucinus
ENSHGLG00000020104	PABPC4L	99	84.553	ENSCLAG00000017628	PABPC4L	99	84.553	Chinchilla_lanigera
ENSHGLG00000020104	PABPC4L	99	82.385	ENSCANG00000037677	PABPC4L	99	82.385	Colobus_angolensis_palliatus
ENSHGLG00000020104	PABPC4L	99	75.881	ENSCGRG00001002070	Pabpc4l	99	75.881	Cricetulus_griseus_chok1gshd
ENSHGLG00000020104	PABPC4L	99	75.881	ENSCGRG00000020086	Pabpc4l	99	75.881	Cricetulus_griseus_crigri
ENSHGLG00000020104	PABPC4L	99	82.114	ENSDNOG00000031077	PABPC4L	95	82.114	Dasypus_novemcinctus
ENSHGLG00000020104	PABPC4L	100	80.270	ENSEASG00005007883	PABPC4L	100	80.270	Equus_asinus_asinus
ENSHGLG00000020104	PABPC4L	100	80.811	ENSECAG00000031416	PABPC4L	100	80.811	Equus_caballus
ENSHGLG00000020104	PABPC4L	100	81.622	ENSFCAG00000028270	PABPC4L	100	81.622	Felis_catus
ENSHGLG00000020104	PABPC4L	100	90.541	ENSFDAG00000019606	PABPC4L	100	90.541	Fukomys_damarensis
ENSHGLG00000020104	PABPC4L	99	83.469	ENSGGOG00000024991	PABPC4L	99	83.469	Gorilla_gorilla
ENSHGLG00000020104	PABPC4L	100	100.000	ENSHGLG00100020648	PABPC4L	100	100.000	Heterocephalus_glaber_male
ENSHGLG00000020104	PABPC4L	99	80.270	ENSSTOG00000019472	PABPC4L	99	80.270	Ictidomys_tridecemlineatus
ENSHGLG00000020104	PABPC4L	100	76.757	ENSJJAG00000004090	Pabpc4l	100	76.757	Jaculus_jaculus
ENSHGLG00000020104	PABPC4L	99	76.694	ENSMAUG00000016313	Pabpc4l	99	76.694	Mesocricetus_auratus
ENSHGLG00000020104	PABPC4L	99	84.282	ENSMICG00000029683	PABPC4L	99	84.282	Microcebus_murinus
ENSHGLG00000020104	PABPC4L	99	77.778	ENSMOCG00000007551	Pabpc4l	99	77.778	Microtus_ochrogaster
ENSHGLG00000020104	PABPC4L	99	75.881	MGP_CAROLIEiJ_G0024968	Pabpc4l	99	75.881	Mus_caroli
ENSHGLG00000020104	PABPC4L	99	75.339	ENSMUSG00000090919	Pabpc4l	99	75.339	Mus_musculus
ENSHGLG00000020104	PABPC4L	99	75.610	MGP_PahariEiJ_G0026409	Pabpc4l	99	75.610	Mus_pahari
ENSHGLG00000020104	PABPC4L	99	75.339	MGP_SPRETEiJ_G0025903	Pabpc4l	99	75.339	Mus_spretus
ENSHGLG00000020104	PABPC4L	99	74.526	ENSMLUG00000008254	PABPC4L	99	74.526	Myotis_lucifugus
ENSHGLG00000020104	PABPC4L	99	79.675	ENSNGAG00000001502	Pabpc4l	99	79.675	Nannospalax_galili
ENSHGLG00000020104	PABPC4L	99	83.740	ENSNLEG00000019300	PABPC4L	99	83.740	Nomascus_leucogenys
ENSHGLG00000020104	PABPC4L	99	76.965	ENSOGAG00000026166	PABPC4L	99	76.965	Otolemur_garnettii
ENSHGLG00000020104	PABPC4L	99	83.901	ENSPPAG00000043745	PABPC4L	92	83.901	Pan_paniscus
ENSHGLG00000020104	PABPC4L	100	81.081	ENSPPRG00000018628	PABPC4L	100	81.081	Panthera_pardus
ENSHGLG00000020104	PABPC4L	100	81.622	ENSPTIG00000010106	PABPC4L	100	81.622	Panthera_tigris_altaica
ENSHGLG00000020104	PABPC4L	99	83.901	ENSPTRG00000045513	-	76	83.901	Pan_troglodytes
ENSHGLG00000020104	PABPC4L	99	77.236	ENSPEMG00000012565	Pabpc4l	99	77.236	Peromyscus_maniculatus_bairdii
ENSHGLG00000020104	PABPC4L	99	83.198	ENSPCOG00000025578	PABPC4L	99	83.198	Propithecus_coquereli
ENSHGLG00000020104	PABPC4L	99	75.339	ENSRNOG00000029749	Pabpc4l	99	75.339	Rattus_norvegicus
ENSHGLG00000020104	PABPC4L	99	82.114	ENSRBIG00000030229	PABPC4L	99	82.114	Rhinopithecus_bieti
ENSHGLG00000020104	PABPC4L	99	81.843	ENSRROG00000020367	PABPC4L	99	81.843	Rhinopithecus_roxellana
ENSHGLG00000020104	PABPC4L	99	83.198	ENSSBOG00000016382	PABPC4L	99	83.198	Saimiri_boliviensis_boliviensis
ENSHGLG00000020104	PABPC4L	100	74.865	ENSSSCG00000009067	PABPC4L	100	74.865	Sus_scrofa
ENSHGLG00000020104	PABPC4L	100	80.811	ENSUAMG00000001289	PABPC4L	100	80.811	Ursus_americanus
ENSHGLG00000020104	PABPC4L	100	80.811	ENSUMAG00000014887	PABPC4L	100	80.811	Ursus_maritimus
ENSHGLG00000020104	PABPC4L	96	77.576	ENSVVUG00000011060	-	75	77.576	Vulpes_vulpes