EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100001102 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 78121 bases
Position: chrJH166953.1:377258-455378
Accession: 101720942
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100001392	ResIII	PF04851.15	1.3e-12	1	1
ENSHGLP00100001393	ResIII	PF04851.15	4.9e-12	1	1
ENSHGLP00100001391	ResIII	PF04851.15	5e-12	1	1
ENSHGLP00100001392	DEAD	PF00270.29	1.6e-06	1	1
ENSHGLP00100001393	DEAD	PF00270.29	3.1e-06	1	1
ENSHGLP00100001391	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100001429	SMARCA1-202	972	-	ENSHGLP00100001392	324 (aa)	-	-
ENSHGLT00100001428	SMARCA1-201	3012	XM_021240594	ENSHGLP00100001391	1003 (aa)	XP_021096253	-
ENSHGLT00100001430	SMARCA1-203	3006	-	ENSHGLP00100001393	1001 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100001102's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100001102's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100001102	SMARCA1	56	34.518	ENSHGLG00100008108	-	60	31.217
ENSHGLG00100001102	SMARCA1	54	38.674	ENSHGLG00100003339	ERCC6L	51	30.603
ENSHGLG00100001102	SMARCA1	63	39.252	ENSHGLG00100001011	-	57	43.426
ENSHGLG00100001102	SMARCA1	99	83.891	ENSHGLG00100018421	-	98	83.891
ENSHGLG00100001102	SMARCA1	62	43.333	ENSHGLG00100001957	-	77	38.021
ENSHGLG00100001102	SMARCA1	56	43.407	ENSHGLG00100007155	CHD1L	64	42.882
ENSHGLG00100001102	SMARCA1	68	42.731	ENSHGLG00100017230	-	65	47.012

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100001102	SMARCA1	100	96.803	ENSG00000102038	SMARCA1	94	97.160	Homo_sapiens
ENSHGLG00100001102	SMARCA1	98	82.281	ENSAPOG00000016035	smarca5	98	83.151	Acanthochromis_polyacanthus
ENSHGLG00100001102	SMARCA1	100	95.262	ENSAMEG00000015218	SMARCA1	94	95.262	Ailuropoda_melanoleuca
ENSHGLG00100001102	SMARCA1	90	83.167	ENSACIG00000016982	smarca5	99	83.185	Amphilophus_citrinellus
ENSHGLG00100001102	SMARCA1	98	82.281	ENSAOCG00000015578	smarca5	95	81.325	Amphiprion_ocellaris
ENSHGLG00100001102	SMARCA1	98	82.281	ENSAPEG00000011117	smarca5	99	83.255	Amphiprion_percula
ENSHGLG00100001102	SMARCA1	99	81.883	ENSATEG00000012894	smarca5	93	83.966	Anabas_testudineus
ENSHGLG00100001102	SMARCA1	99	90.992	ENSAPLG00000013149	SMARCA1	100	90.992	Anas_platyrhynchos
ENSHGLG00100001102	SMARCA1	100	90.310	ENSACAG00000011376	SMARCA1	95	90.310	Anolis_carolinensis
ENSHGLG00100001102	SMARCA1	100	91.409	ENSANAG00000023098	SMARCA1	94	91.409	Aotus_nancymaae
ENSHGLG00100001102	SMARCA1	99	82.287	ENSACLG00000025356	smarca5	95	81.864	Astatotilapia_calliptera
ENSHGLG00100001102	SMARCA1	93	87.204	ENSAMXG00000011227	smarca1	99	88.970	Astyanax_mexicanus
ENSHGLG00100001102	SMARCA1	98	83.027	ENSAMXG00000005709	smarca5	94	82.773	Astyanax_mexicanus
ENSHGLG00100001102	SMARCA1	99	96.096	ENSBTAG00000002292	SMARCA1	93	96.633	Bos_taurus
ENSHGLG00100001102	SMARCA1	98	62.777	WBGene00002169	isw-1	97	62.777	Caenorhabditis_elegans
ENSHGLG00100001102	SMARCA1	100	96.503	ENSCJAG00000002868	SMARCA1	94	96.503	Callithrix_jacchus
ENSHGLG00100001102	SMARCA1	95	95.440	ENSCAFG00000018673	SMARCA1	99	86.941	Canis_familiaris
ENSHGLG00100001102	SMARCA1	100	96.503	ENSCAFG00020001751	SMARCA1	94	96.503	Canis_lupus_dingo
ENSHGLG00100001102	SMARCA1	100	96.304	ENSCHIG00000009837	SMARCA1	94	96.304	Capra_hircus
ENSHGLG00100001102	SMARCA1	100	96.503	ENSTSYG00000004240	SMARCA1	97	96.626	Carlito_syrichta
ENSHGLG00100001102	SMARCA1	100	97.802	ENSCPOG00000013601	SMARCA1	95	97.802	Cavia_porcellus
ENSHGLG00100001102	SMARCA1	100	93.506	ENSCCAG00000030817	SMARCA1	94	93.506	Cebus_capucinus
ENSHGLG00100001102	SMARCA1	100	95.656	ENSCATG00000015921	SMARCA1	93	96.830	Cercocebus_atys
ENSHGLG00100001102	SMARCA1	100	97.403	ENSCLAG00000002171	SMARCA1	94	97.769	Chinchilla_lanigera
ENSHGLG00100001102	SMARCA1	100	96.803	ENSCSAG00000008460	SMARCA1	94	96.803	Chlorocebus_sabaeus
ENSHGLG00100001102	SMARCA1	100	91.109	ENSCPBG00000001146	SMARCA1	94	91.109	Chrysemys_picta_bellii
ENSHGLG00100001102	SMARCA1	99	72.144	ENSCING00000004110	swi/snf	98	72.144	Ciona_intestinalis
ENSHGLG00100001102	SMARCA1	99	71.486	ENSCSAVG00000004620	-	100	73.497	Ciona_savignyi
ENSHGLG00100001102	SMARCA1	100	96.703	ENSCANG00000007183	SMARCA1	94	96.703	Colobus_angolensis_palliatus
ENSHGLG00100001102	SMARCA1	100	94.805	ENSCGRG00001010776	Smarca1	94	94.805	Cricetulus_griseus_chok1gshd
ENSHGLG00100001102	SMARCA1	99	94.472	ENSCGRG00000015301	Smarca1	98	94.472	Cricetulus_griseus_crigri
ENSHGLG00100001102	SMARCA1	98	82.077	ENSCSEG00000000328	smarca5	95	81.325	Cynoglossus_semilaevis
ENSHGLG00100001102	SMARCA1	99	81.680	ENSCVAG00000008668	smarca5	99	82.803	Cyprinodon_variegatus
ENSHGLG00100001102	SMARCA1	99	83.399	ENSDARG00000012776	smarca1	97	83.399	Danio_rerio
ENSHGLG00100001102	SMARCA1	99	81.307	ENSDARG00000052348	smarca5	95	81.307	Danio_rerio
ENSHGLG00100001102	SMARCA1	98	95.092	ENSDNOG00000004315	SMARCA1	94	95.092	Dasypus_novemcinctus
ENSHGLG00100001102	SMARCA1	98	95.706	ENSDORG00000009270	Smarca1	94	94.929	Dipodomys_ordii
ENSHGLG00100001102	SMARCA1	96	72.906	FBgn0011604	Iswi	98	71.681	Drosophila_melanogaster
ENSHGLG00100001102	SMARCA1	83	91.071	ENSETEG00000017426	SMARCA1	86	91.071	Echinops_telfairi
ENSHGLG00100001102	SMARCA1	98	80.102	ENSEBUG00000001239	smarca5	96	80.102	Eptatretus_burgeri
ENSHGLG00100001102	SMARCA1	99	91.127	ENSEASG00005008218	SMARCA1	100	91.466	Equus_asinus_asinus
ENSHGLG00100001102	SMARCA1	100	96.404	ENSECAG00000012106	SMARCA1	94	96.404	Equus_caballus
ENSHGLG00100001102	SMARCA1	86	94.982	ENSEEUG00000014927	SMARCA1	84	95.033	Erinaceus_europaeus
ENSHGLG00100001102	SMARCA1	100	84.876	ENSELUG00000010515	smarca1	98	84.876	Esox_lucius
ENSHGLG00100001102	SMARCA1	100	96.603	ENSFCAG00000018496	SMARCA1	94	96.603	Felis_catus
ENSHGLG00100001102	SMARCA1	91	91.776	ENSFALG00000000209	SMARCA1	98	91.877	Ficedula_albicollis
ENSHGLG00100001102	SMARCA1	98	98.174	ENSFDAG00000009818	SMARCA1	97	98.174	Fukomys_damarensis
ENSHGLG00100001102	SMARCA1	99	82.085	ENSFHEG00000007687	smarca5	91	84.678	Fundulus_heteroclitus
ENSHGLG00100001102	SMARCA1	96	91.259	ENSGALG00000008431	SMARCA1	96	90.984	Gallus_gallus
ENSHGLG00100001102	SMARCA1	99	82.085	ENSGAFG00000017731	smarca5	95	81.526	Gambusia_affinis
ENSHGLG00100001102	SMARCA1	97	91.967	ENSGAGG00000023575	SMARCA1	99	91.967	Gopherus_agassizii
ENSHGLG00100001102	SMARCA1	95	95.455	ENSGGOG00000012841	-	95	92.000	Gorilla_gorilla
ENSHGLG00100001102	SMARCA1	100	99.401	ENSHGLG00000003080	SMARCA1	94	99.696	Heterocephalus_glaber_female
ENSHGLG00100001102	SMARCA1	98	82.215	ENSHCOG00000005458	smarca5	95	81.526	Hippocampus_comes
ENSHGLG00100001102	SMARCA1	99	81.452	ENSIPUG00000005229	SMARCA5	97	81.452	Ictalurus_punctatus
ENSHGLG00100001102	SMARCA1	99	84.369	ENSIPUG00000016905	Smarca1	99	84.975	Ictalurus_punctatus
ENSHGLG00100001102	SMARCA1	100	96.603	ENSSTOG00000014524	SMARCA1	94	97.219	Ictidomys_tridecemlineatus
ENSHGLG00100001102	SMARCA1	100	95.804	ENSJJAG00000002593	Smarca1	94	95.804	Jaculus_jaculus
ENSHGLG00100001102	SMARCA1	98	82.317	ENSKMAG00000003777	smarca5	95	81.627	Kryptolebias_marmoratus
ENSHGLG00100001102	SMARCA1	99	80.924	ENSLBEG00000018112	smarca5	95	80.924	Labrus_bergylta
ENSHGLG00100001102	SMARCA1	94	82.177	ENSLBEG00000013295	SMARCA1	100	83.818	Labrus_bergylta
ENSHGLG00100001102	SMARCA1	100	88.911	ENSLACG00000016697	SMARCA1	98	88.911	Latimeria_chalumnae
ENSHGLG00100001102	SMARCA1	100	87.425	ENSLOCG00000014591	smarca1	97	87.425	Lepisosteus_oculatus
ENSHGLG00100001102	SMARCA1	100	95.604	ENSLAFG00000000896	SMARCA1	99	95.604	Loxodonta_africana
ENSHGLG00100001102	SMARCA1	100	96.803	ENSMFAG00000002117	SMARCA1	97	97.035	Macaca_fascicularis
ENSHGLG00100001102	SMARCA1	100	95.656	ENSMMUG00000008818	SMARCA1	99	96.462	Macaca_mulatta
ENSHGLG00100001102	SMARCA1	100	95.656	ENSMNEG00000041768	SMARCA1	97	97.035	Macaca_nemestrina
ENSHGLG00100001102	SMARCA1	100	96.903	ENSMLEG00000043198	SMARCA1	94	96.903	Mandrillus_leucophaeus
ENSHGLG00100001102	SMARCA1	99	82.287	ENSMAMG00000014294	smarca5	95	81.727	Mastacembelus_armatus
ENSHGLG00100001102	SMARCA1	99	82.287	ENSMZEG00005009369	smarca5	95	81.864	Maylandia_zebra
ENSHGLG00100001102	SMARCA1	100	89.339	ENSMGAG00000007042	SMARCA1	99	89.339	Meleagris_gallopavo
ENSHGLG00100001102	SMARCA1	99	95.075	ENSMAUG00000008133	Smarca1	94	95.075	Mesocricetus_auratus
ENSHGLG00100001102	SMARCA1	100	96.503	ENSMICG00000015768	SMARCA1	94	96.503	Microcebus_murinus
ENSHGLG00100001102	SMARCA1	100	95.105	ENSMOCG00000009464	Smarca1	94	95.538	Microtus_ochrogaster
ENSHGLG00100001102	SMARCA1	99	79.719	ENSMMOG00000005547	smarca5	99	79.719	Mola_mola
ENSHGLG00100001102	SMARCA1	99	90.433	ENSMODG00000013187	-	96	90.110	Monodelphis_domestica
ENSHGLG00100001102	SMARCA1	98	81.911	ENSMALG00000002081	smarca5	97	81.493	Monopterus_albus
ENSHGLG00100001102	SMARCA1	100	95.405	MGP_CAROLIEiJ_G0033034	Smarca1	94	95.405	Mus_caroli
ENSHGLG00100001102	SMARCA1	100	95.504	ENSMUSG00000031099	Smarca1	94	95.504	Mus_musculus
ENSHGLG00100001102	SMARCA1	100	95.305	MGP_PahariEiJ_G0031579	Smarca1	94	95.305	Mus_pahari
ENSHGLG00100001102	SMARCA1	100	95.504	MGP_SPRETEiJ_G0034192	Smarca1	94	95.504	Mus_spretus
ENSHGLG00100001102	SMARCA1	100	95.262	ENSMPUG00000017423	SMARCA1	89	95.262	Mustela_putorius_furo
ENSHGLG00100001102	SMARCA1	100	93.300	ENSMLUG00000029614	SMARCA1	94	92.906	Myotis_lucifugus
ENSHGLG00100001102	SMARCA1	98	96.755	ENSNGAG00000006492	Smarca1	94	96.755	Nannospalax_galili
ENSHGLG00100001102	SMARCA1	99	82.389	ENSNBRG00000004463	smarca5	99	81.964	Neolamprologus_brichardi
ENSHGLG00100001102	SMARCA1	100	94.867	ENSNLEG00000015179	SMARCA1	97	96.115	Nomascus_leucogenys
ENSHGLG00100001102	SMARCA1	95	87.987	ENSMEUG00000008819	SMARCA1	99	81.170	Notamacropus_eugenii
ENSHGLG00100001102	SMARCA1	98	97.663	ENSODEG00000012163	SMARCA1	93	97.663	Octodon_degus
ENSHGLG00100001102	SMARCA1	99	82.389	ENSONIG00000009993	smarca5	95	81.827	Oreochromis_niloticus
ENSHGLG00100001102	SMARCA1	97	92.379	ENSOANG00000002862	SMARCA1	99	92.379	Ornithorhynchus_anatinus
ENSHGLG00100001102	SMARCA1	100	95.405	ENSOCUG00000001047	SMARCA1	94	95.405	Oryctolagus_cuniculus
ENSHGLG00100001102	SMARCA1	98	82.215	ENSORLG00000021998	smarca5	95	81.526	Oryzias_latipes
ENSHGLG00100001102	SMARCA1	98	82.317	ENSORLG00020017679	smarca5	95	81.627	Oryzias_latipes_hni
ENSHGLG00100001102	SMARCA1	98	82.215	ENSORLG00015017210	smarca5	95	81.426	Oryzias_latipes_hsok
ENSHGLG00100001102	SMARCA1	98	82.215	ENSOMEG00000000086	smarca5	95	81.426	Oryzias_melastigma
ENSHGLG00100001102	SMARCA1	98	97.056	ENSOGAG00000004399	SMARCA1	93	97.056	Otolemur_garnettii
ENSHGLG00100001102	SMARCA1	99	96.349	ENSOARG00000014638	SMARCA1	100	96.349	Ovis_aries
ENSHGLG00100001102	SMARCA1	100	96.803	ENSPPAG00000034647	SMARCA1	94	96.803	Pan_paniscus
ENSHGLG00100001102	SMARCA1	100	96.603	ENSPPRG00000008929	SMARCA1	94	96.603	Panthera_pardus
ENSHGLG00100001102	SMARCA1	100	94.499	ENSPTIG00000000915	SMARCA1	98	94.499	Panthera_tigris_altaica
ENSHGLG00100001102	SMARCA1	100	96.803	ENSPTRG00000049876	SMARCA1	93	96.830	Pan_troglodytes
ENSHGLG00100001102	SMARCA1	100	96.803	ENSPANG00000003871	SMARCA1	94	96.803	Papio_anubis
ENSHGLG00100001102	SMARCA1	99	83.635	ENSPKIG00000013411	smarca1	98	85.936	Paramormyrops_kingsleyae
ENSHGLG00100001102	SMARCA1	100	89.832	ENSPSIG00000010101	SMARCA1	99	91.658	Pelodiscus_sinensis
ENSHGLG00100001102	SMARCA1	98	96.247	ENSPEMG00000017503	Smarca1	94	96.247	Peromyscus_maniculatus_bairdii
ENSHGLG00100001102	SMARCA1	100	90.609	ENSPCIG00000015460	SMARCA1	98	90.609	Phascolarctos_cinereus
ENSHGLG00100001102	SMARCA1	98	82.317	ENSPFOG00000007649	smarca5	95	81.526	Poecilia_formosa
ENSHGLG00100001102	SMARCA1	98	82.317	ENSPLAG00000003363	smarca5	95	81.526	Poecilia_latipinna
ENSHGLG00100001102	SMARCA1	98	82.215	ENSPMEG00000019849	smarca5	95	81.426	Poecilia_mexicana
ENSHGLG00100001102	SMARCA1	98	82.215	ENSPREG00000023250	smarca5	95	81.426	Poecilia_reticulata
ENSHGLG00100001102	SMARCA1	100	93.906	ENSPPYG00000020703	SMARCA1	94	93.906	Pongo_abelii
ENSHGLG00100001102	SMARCA1	87	95.760	ENSPCOG00000020722	SMARCA1	94	91.593	Propithecus_coquereli
ENSHGLG00100001102	SMARCA1	92	96.173	ENSPVAG00000003805	SMARCA1	88	96.173	Pteropus_vampyrus
ENSHGLG00100001102	SMARCA1	94	79.412	ENSPNYG00000012299	smarca5	91	82.306	Pundamilia_nyererei
ENSHGLG00100001102	SMARCA1	100	95.105	ENSRNOG00000003762	Smarca1	94	95.105	Rattus_norvegicus
ENSHGLG00100001102	SMARCA1	100	96.703	ENSRROG00000034167	SMARCA1	94	96.703	Rhinopithecus_roxellana
ENSHGLG00100001102	SMARCA1	99	96.755	ENSSBOG00000020641	SMARCA1	100	96.755	Saimiri_boliviensis_boliviensis
ENSHGLG00100001102	SMARCA1	97	85.802	ENSSHAG00000013518	SMARCA1	99	85.802	Sarcophilus_harrisii
ENSHGLG00100001102	SMARCA1	99	81.062	ENSSFOG00015016794	smarca5	99	82.559	Scleropages_formosus
ENSHGLG00100001102	SMARCA1	100	85.857	ENSSFOG00015009043	smarca1	98	85.857	Scleropages_formosus
ENSHGLG00100001102	SMARCA1	99	81.269	ENSSMAG00000004801	smarca5	95	81.269	Scophthalmus_maximus
ENSHGLG00100001102	SMARCA1	99	81.781	ENSSDUG00000020690	smarca5	96	81.225	Seriola_dumerili
ENSHGLG00100001102	SMARCA1	99	81.781	ENSSLDG00000025190	smarca5	96	81.225	Seriola_lalandi_dorsalis
ENSHGLG00100001102	SMARCA1	91	89.674	ENSSARG00000000842	SMARCA1	91	89.674	Sorex_araneus
ENSHGLG00100001102	SMARCA1	98	90.686	ENSSPUG00000000590	SMARCA1	94	90.686	Sphenodon_punctatus
ENSHGLG00100001102	SMARCA1	99	81.680	ENSSPAG00000002894	smarca5	97	82.932	Stegastes_partitus
ENSHGLG00100001102	SMARCA1	98	96.319	ENSSSCG00000012649	SMARCA1	94	96.910	Sus_scrofa
ENSHGLG00100001102	SMARCA1	99	90.587	ENSTGUG00000003899	-	100	90.587	Taeniopygia_guttata
ENSHGLG00100001102	SMARCA1	99	81.883	ENSTRUG00000014094	smarca5	95	81.325	Takifugu_rubripes
ENSHGLG00100001102	SMARCA1	98	81.263	ENSTNIG00000017717	smarca5	94	80.422	Tetraodon_nigroviridis
ENSHGLG00100001102	SMARCA1	99	89.558	ENSTBEG00000014973	SMARCA1	99	89.648	Tupaia_belangeri
ENSHGLG00100001102	SMARCA1	98	93.921	ENSTTRG00000006168	SMARCA1	99	93.921	Tursiops_truncatus
ENSHGLG00100001102	SMARCA1	100	96.104	ENSUAMG00000020201	SMARCA1	94	96.104	Ursus_americanus
ENSHGLG00100001102	SMARCA1	100	90.622	ENSUMAG00000004073	SMARCA1	97	96.594	Ursus_maritimus
ENSHGLG00100001102	SMARCA1	86	96.057	ENSVPAG00000010492	-	86	98.413	Vicugna_pacos
ENSHGLG00100001102	SMARCA1	100	96.404	ENSVVUG00000008878	SMARCA1	100	95.773	Vulpes_vulpes
ENSHGLG00100001102	SMARCA1	99	87.612	ENSXETG00000001526	smarca1	99	87.612	Xenopus_tropicalis
ENSHGLG00100001102	SMARCA1	99	81.984	ENSXCOG00000011170	smarca5	98	81.426	Xiphophorus_couchianus
ENSHGLG00100001102	SMARCA1	99	81.984	ENSXMAG00000009678	smarca5	97	84.211	Xiphophorus_maculatus