EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100002187 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Minus strand
Length: 8644 bases
Position: chrJH171302.1:658343-666986
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100002827	APOBEC_N	PF08210.11	9.1e-27	1	1
ENSHGLP00100002827	APOBEC_C	PF05240.14	5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100002882	APOBEC1-201	1058	-	ENSHGLP00100002827	236 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100002187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100002187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100002187	APOBEC1	63	43.421	ENSHGLG00100003105	-	58	43.421

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100002187	APOBEC1	99	64.681	ENSG00000111701	APOBEC1	99	64.681	Homo_sapiens
ENSHGLG00100002187	APOBEC1	97	62.174	ENSAMEG00000007098	APOBEC1	97	62.174	Ailuropoda_melanoleuca
ENSHGLG00100002187	APOBEC1	72	42.197	ENSACAG00000028578	-	93	42.197	Anolis_carolinensis
ENSHGLG00100002187	APOBEC1	99	63.404	ENSANAG00000027743	APOBEC1	95	63.404	Aotus_nancymaae
ENSHGLG00100002187	APOBEC1	99	59.149	ENSBTAG00000014683	APOBEC1	99	59.149	Bos_taurus
ENSHGLG00100002187	APOBEC1	93	64.091	ENSCJAG00000005398	APOBEC1	99	64.091	Callithrix_jacchus
ENSHGLG00100002187	APOBEC1	99	62.979	ENSCAFG00000013901	APOBEC1	99	62.979	Canis_familiaris
ENSHGLG00100002187	APOBEC1	99	60.944	ENSCAFG00020003511	APOBEC1	97	60.944	Canis_lupus_dingo
ENSHGLG00100002187	APOBEC1	97	59.565	ENSCHIG00000011898	APOBEC1	95	59.565	Capra_hircus
ENSHGLG00100002187	APOBEC1	58	62.774	ENSTSYG00000029141	APOBEC1	97	62.774	Carlito_syrichta
ENSHGLG00100002187	APOBEC1	91	74.419	ENSCAPG00000015882	-	100	74.419	Cavia_aperea
ENSHGLG00100002187	APOBEC1	99	71.064	ENSCPOG00000033068	APOBEC1	99	71.064	Cavia_porcellus
ENSHGLG00100002187	APOBEC1	99	64.255	ENSCCAG00000022258	APOBEC1	99	64.255	Cebus_capucinus
ENSHGLG00100002187	APOBEC1	99	65.957	ENSCATG00000021613	APOBEC1	95	65.957	Cercocebus_atys
ENSHGLG00100002187	APOBEC1	97	76.087	ENSCLAG00000014645	APOBEC1	100	76.087	Chinchilla_lanigera
ENSHGLG00100002187	APOBEC1	80	66.138	ENSCSAG00000009817	APOBEC1	99	66.138	Chlorocebus_sabaeus
ENSHGLG00100002187	APOBEC1	89	41.038	ENSCPBG00000014327	-	82	41.038	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	83	42.132	ENSCPBG00000014329	-	54	42.132	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	83	45.455	ENSCPBG00000014328	-	86	45.455	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	69	46.988	ENSCPBG00000017398	-	73	46.988	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	78	45.989	ENSCPBG00000014331	-	77	45.989	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	78	44.920	ENSCPBG00000014335	-	76	44.920	Chrysemys_picta_bellii
ENSHGLG00100002187	APOBEC1	96	66.814	ENSCANG00000038359	APOBEC1	98	66.814	Colobus_angolensis_palliatus
ENSHGLG00100002187	APOBEC1	97	58.079	ENSCGRG00001011130	Apobec1	100	58.079	Cricetulus_griseus_chok1gshd
ENSHGLG00100002187	APOBEC1	97	58.079	ENSCGRG00000008644	Apobec1	100	58.079	Cricetulus_griseus_crigri
ENSHGLG00100002187	APOBEC1	99	61.277	ENSDNOG00000010926	APOBEC1	99	61.277	Dasypus_novemcinctus
ENSHGLG00100002187	APOBEC1	90	57.009	ENSDORG00000023717	Apobec1	100	57.009	Dipodomys_ordii
ENSHGLG00100002187	APOBEC1	99	65.957	ENSETEG00000004867	APOBEC1	99	65.957	Echinops_telfairi
ENSHGLG00100002187	APOBEC1	98	61.638	ENSEASG00005015951	APOBEC1	97	61.638	Equus_asinus_asinus
ENSHGLG00100002187	APOBEC1	80	61.905	ENSECAG00000017163	APOBEC1	99	61.905	Equus_caballus
ENSHGLG00100002187	APOBEC1	92	61.927	ENSEEUG00000009112	-	97	61.927	Erinaceus_europaeus
ENSHGLG00100002187	APOBEC1	86	52.941	ENSEEUG00000007530	-	97	52.941	Erinaceus_europaeus
ENSHGLG00100002187	APOBEC1	99	63.404	ENSFCAG00000009350	APOBEC1	99	63.404	Felis_catus
ENSHGLG00100002187	APOBEC1	60	46.154	ENSFALG00000007257	-	70	46.154	Ficedula_albicollis
ENSHGLG00100002187	APOBEC1	88	80.769	ENSFDAG00000018470	APOBEC1	100	80.769	Fukomys_damarensis
ENSHGLG00100002187	APOBEC1	72	43.429	ENSGAGG00000021745	-	64	43.429	Gopherus_agassizii
ENSHGLG00100002187	APOBEC1	86	42.365	ENSGAGG00000021744	-	79	42.365	Gopherus_agassizii
ENSHGLG00100002187	APOBEC1	68	42.593	ENSGAGG00000004947	-	80	42.593	Gopherus_agassizii
ENSHGLG00100002187	APOBEC1	72	44.444	ENSGAGG00000006624	-	62	44.444	Gopherus_agassizii
ENSHGLG00100002187	APOBEC1	88	45.455	ENSGAGG00000011837	-	88	46.875	Gopherus_agassizii
ENSHGLG00100002187	APOBEC1	100	98.305	ENSHGLG00000001495	APOBEC1	100	98.305	Heterocephalus_glaber_female
ENSHGLG00100002187	APOBEC1	91	50.467	ENSSTOG00000021971	APOBEC1	100	58.163	Ictidomys_tridecemlineatus
ENSHGLG00100002187	APOBEC1	97	62.882	ENSJJAG00000022108	Apobec1	100	62.882	Jaculus_jaculus
ENSHGLG00100002187	APOBEC1	94	62.162	ENSLAFG00000030837	APOBEC1	99	62.162	Loxodonta_africana
ENSHGLG00100002187	APOBEC1	99	65.957	ENSMFAG00000000277	APOBEC1	99	66.667	Macaca_fascicularis
ENSHGLG00100002187	APOBEC1	99	65.957	ENSMNEG00000029670	APOBEC1	99	65.957	Macaca_nemestrina
ENSHGLG00100002187	APOBEC1	99	65.957	ENSMLEG00000036301	APOBEC1	99	65.957	Mandrillus_leucophaeus
ENSHGLG00100002187	APOBEC1	92	58.333	ENSMAUG00000022167	Apobec1	97	58.333	Mesocricetus_auratus
ENSHGLG00100002187	APOBEC1	99	67.234	ENSMICG00000043645	APOBEC1	99	67.234	Microcebus_murinus
ENSHGLG00100002187	APOBEC1	99	57.447	ENSMODG00000018004	APOBEC1	99	57.447	Monodelphis_domestica
ENSHGLG00100002187	APOBEC1	97	59.211	ENSMUSG00000040613	Apobec1	99	59.211	Mus_musculus
ENSHGLG00100002187	APOBEC1	97	58.772	MGP_PahariEiJ_G0022580	-	99	59.167	Mus_pahari
ENSHGLG00100002187	APOBEC1	97	59.211	MGP_SPRETEiJ_G0029857	Apobec1	99	59.211	Mus_spretus
ENSHGLG00100002187	APOBEC1	99	60.000	ENSMPUG00000017532	APOBEC1	99	60.000	Mustela_putorius_furo
ENSHGLG00100002187	APOBEC1	97	59.389	ENSNGAG00000022607	Apobec1	100	59.389	Nannospalax_galili
ENSHGLG00100002187	APOBEC1	99	65.957	ENSNLEG00000005342	APOBEC1	99	65.957	Nomascus_leucogenys
ENSHGLG00100002187	APOBEC1	99	56.596	ENSMEUG00000013406	APOBEC1	99	56.596	Notamacropus_eugenii
ENSHGLG00100002187	APOBEC1	75	55.367	ENSOPRG00000009508	-	98	55.367	Ochotona_princeps
ENSHGLG00100002187	APOBEC1	99	60.851	ENSOCUG00000025736	APOBEC1	88	60.851	Oryctolagus_cuniculus
ENSHGLG00100002187	APOBEC1	98	64.224	ENSOGAG00000026415	APOBEC1	98	64.224	Otolemur_garnettii
ENSHGLG00100002187	APOBEC1	99	60.000	ENSOARG00000002072	APOBEC1	98	60.000	Ovis_aries
ENSHGLG00100002187	APOBEC1	97	62.174	ENSPPAG00000027657	APOBEC1	97	62.174	Pan_paniscus
ENSHGLG00100002187	APOBEC1	99	62.979	ENSPPRG00000012182	APOBEC1	99	62.979	Panthera_pardus
ENSHGLG00100002187	APOBEC1	99	62.979	ENSPTIG00000020280	APOBEC1	99	62.979	Panthera_tigris_altaica
ENSHGLG00100002187	APOBEC1	99	65.106	ENSPTRG00000004614	APOBEC1	99	65.106	Pan_troglodytes
ENSHGLG00100002187	APOBEC1	99	65.957	ENSPANG00000021027	APOBEC1	99	65.957	Papio_anubis
ENSHGLG00100002187	APOBEC1	59	48.454	ENSPSIG00000012791	-	74	48.454	Pelodiscus_sinensis
ENSHGLG00100002187	APOBEC1	91	40.741	ENSPSIG00000012568	-	90	40.741	Pelodiscus_sinensis
ENSHGLG00100002187	APOBEC1	97	60.699	ENSPEMG00000023841	Apobec1	100	60.699	Peromyscus_maniculatus_bairdii
ENSHGLG00100002187	APOBEC1	99	58.298	ENSPCIG00000023973	APOBEC1	99	58.298	Phascolarctos_cinereus
ENSHGLG00100002187	APOBEC1	100	64.831	ENSPPYG00000004228	APOBEC1	95	64.831	Pongo_abelii
ENSHGLG00100002187	APOBEC1	79	59.893	ENSPCAG00000008733	APOBEC1	100	59.893	Procavia_capensis
ENSHGLG00100002187	APOBEC1	94	64.706	ENSPCOG00000013957	APOBEC1	98	64.706	Propithecus_coquereli
ENSHGLG00100002187	APOBEC1	99	47.234	ENSPVAG00000010709	APOBEC1	99	47.234	Pteropus_vampyrus
ENSHGLG00100002187	APOBEC1	97	57.895	ENSRNOG00000015411	Apobec1	99	57.895	Rattus_norvegicus
ENSHGLG00100002187	APOBEC1	99	64.681	ENSRBIG00000031161	APOBEC1	99	64.681	Rhinopithecus_bieti
ENSHGLG00100002187	APOBEC1	99	64.681	ENSRROG00000033576	APOBEC1	99	64.681	Rhinopithecus_roxellana
ENSHGLG00100002187	APOBEC1	73	62.428	ENSSBOG00000030587	APOBEC1	98	62.428	Saimiri_boliviensis_boliviensis
ENSHGLG00100002187	APOBEC1	96	58.850	ENSSHAG00000008925	APOBEC1	99	58.850	Sarcophilus_harrisii
ENSHGLG00100002187	APOBEC1	73	57.558	ENSSARG00000000032	-	100	57.558	Sorex_araneus
ENSHGLG00100002187	APOBEC1	56	61.364	ENSSARG00000011972	-	100	61.364	Sorex_araneus
ENSHGLG00100002187	APOBEC1	86	40.097	ENSSPUG00000009044	-	79	40.097	Sphenodon_punctatus
ENSHGLG00100002187	APOBEC1	97	64.192	ENSSSCG00000000668	APOBEC1	97	64.192	Sus_scrofa
ENSHGLG00100002187	APOBEC1	61	48.276	ENSTGUG00000013118	-	99	48.276	Taeniopygia_guttata
ENSHGLG00100002187	APOBEC1	99	62.553	ENSTBEG00000010043	APOBEC1	99	62.553	Tupaia_belangeri
ENSHGLG00100002187	APOBEC1	79	58.289	ENSTTRG00000014015	APOBEC1	100	58.289	Tursiops_truncatus
ENSHGLG00100002187	APOBEC1	97	62.609	ENSUAMG00000011636	APOBEC1	94	62.609	Ursus_americanus
ENSHGLG00100002187	APOBEC1	97	62.609	ENSUMAG00000016552	APOBEC1	94	62.609	Ursus_maritimus
ENSHGLG00100002187	APOBEC1	99	61.702	ENSVPAG00000001343	APOBEC1	99	61.702	Vicugna_pacos
ENSHGLG00100002187	APOBEC1	99	63.830	ENSVVUG00000010522	APOBEC1	99	63.830	Vulpes_vulpes