EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100005263 (Gene tree)
Gene ID: -
Gene Symbol: SRP54
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 44292 bases
Position: chrJH167915.1:392205-436496
Accession: 101712361
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100007016	SRP54	PF00448.22	2e-78	1	1
ENSHGLP00100007017	SRP54	PF00448.22	2e-78	1	1
ENSHGLP00100007018	SRP54	PF00448.22	2e-78	1	1
ENSHGLP00100007016	SRP54_N	PF02881.19	1.6e-20	1	1
ENSHGLP00100007017	SRP54_N	PF02881.19	1.6e-20	1	1
ENSHGLP00100007018	SRP54_N	PF02881.19	1.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100007111	-	1751	-	ENSHGLP00100007018	504 (aa)	XP_004867625	G5B113
ENSHGLT00100007110	-	1681	-	ENSHGLP00100007017	504 (aa)	XP_004867625	G5B113
ENSHGLT00100007109	-	2214	XM_004867567	ENSHGLP00100007016	504 (aa)	XP_004867624	G5B113

Gene Model

Click here to download ENSHGLG00100005263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100005263's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100005263	SRP54	100	69.109	ENSHGLG00100007281	-	100	69.109

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100005263	SRP54	100	100.000	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
ENSHGLG00100005263	SRP54	100	95.833	ENSAPOG00000011314	srp54	100	95.833	Acanthochromis_polyacanthus
ENSHGLG00100005263	SRP54	100	100.000	ENSAMEG00000015544	SRP54	100	100.000	Ailuropoda_melanoleuca
ENSHGLG00100005263	SRP54	89	94.655	ENSACIG00000022831	srp54	97	94.655	Amphilophus_citrinellus
ENSHGLG00100005263	SRP54	100	95.833	ENSAOCG00000019401	srp54	100	95.833	Amphiprion_ocellaris
ENSHGLG00100005263	SRP54	100	95.833	ENSAPEG00000001977	srp54	100	95.833	Amphiprion_percula
ENSHGLG00100005263	SRP54	100	96.230	ENSATEG00000013877	srp54	100	96.230	Anabas_testudineus
ENSHGLG00100005263	SRP54	94	98.734	ENSAPLG00000010125	SRP54	95	98.734	Anas_platyrhynchos
ENSHGLG00100005263	SRP54	65	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSHGLG00100005263	SRP54	86	95.622	ENSACAG00000010631	-	100	95.622	Anolis_carolinensis
ENSHGLG00100005263	SRP54	100	98.611	ENSACAG00000002103	-	100	98.611	Anolis_carolinensis
ENSHGLG00100005263	SRP54	100	100.000	ENSANAG00000022133	SRP54	100	100.000	Aotus_nancymaae
ENSHGLG00100005263	SRP54	100	96.032	ENSACLG00000015866	srp54	100	96.032	Astatotilapia_calliptera
ENSHGLG00100005263	SRP54	100	95.635	ENSAMXG00000032669	SRP54	100	95.635	Astyanax_mexicanus
ENSHGLG00100005263	SRP54	100	100.000	ENSBTAG00000019085	SRP54	100	100.000	Bos_taurus
ENSHGLG00100005263	SRP54	98	71.687	WBGene00009012	F21D5.7	100	71.687	Caenorhabditis_elegans
ENSHGLG00100005263	SRP54	100	100.000	ENSCJAG00000006581	SRP54	100	100.000	Callithrix_jacchus
ENSHGLG00100005263	SRP54	100	100.000	ENSCAFG00000013331	SRP54	100	100.000	Canis_familiaris
ENSHGLG00100005263	SRP54	100	100.000	ENSCAFG00020023427	SRP54	100	100.000	Canis_lupus_dingo
ENSHGLG00100005263	SRP54	100	100.000	ENSCHIG00000026345	SRP54	100	100.000	Capra_hircus
ENSHGLG00100005263	SRP54	94	88.632	ENSTSYG00000035333	-	93	88.632	Carlito_syrichta
ENSHGLG00100005263	SRP54	100	99.802	ENSTSYG00000002680	-	100	99.802	Carlito_syrichta
ENSHGLG00100005263	SRP54	94	64.286	ENSCAPG00000008780	SRP54	100	64.286	Cavia_aperea
ENSHGLG00100005263	SRP54	100	99.603	ENSCPOG00000003691	SRP54	100	99.603	Cavia_porcellus
ENSHGLG00100005263	SRP54	90	99.762	ENSCCAG00000024179	SRP54	100	100.000	Cebus_capucinus
ENSHGLG00100005263	SRP54	100	100.000	ENSCATG00000034083	SRP54	100	100.000	Cercocebus_atys
ENSHGLG00100005263	SRP54	100	100.000	ENSCLAG00000015076	SRP54	100	100.000	Chinchilla_lanigera
ENSHGLG00100005263	SRP54	100	100.000	ENSCSAG00000015575	SRP54	100	100.000	Chlorocebus_sabaeus
ENSHGLG00100005263	SRP54	95	87.942	ENSCHOG00000008986	SRP54	100	87.942	Choloepus_hoffmanni
ENSHGLG00100005263	SRP54	100	99.206	ENSCPBG00000026195	SRP54	100	99.206	Chrysemys_picta_bellii
ENSHGLG00100005263	SRP54	100	81.746	ENSCING00000007380	-	100	81.746	Ciona_intestinalis
ENSHGLG00100005263	SRP54	100	100.000	ENSCANG00000028532	SRP54	100	100.000	Colobus_angolensis_palliatus
ENSHGLG00100005263	SRP54	100	99.603	ENSCGRG00001009525	-	100	99.603	Cricetulus_griseus_chok1gshd
ENSHGLG00100005263	SRP54	76	99.481	ENSCGRG00000009453	-	89	99.481	Cricetulus_griseus_crigri
ENSHGLG00100005263	SRP54	100	95.040	ENSCSEG00000012392	srp54	100	95.040	Cynoglossus_semilaevis
ENSHGLG00100005263	SRP54	100	95.833	ENSCVAG00000010395	srp54	100	95.833	Cyprinodon_variegatus
ENSHGLG00100005263	SRP54	100	96.032	ENSDARG00000098367	srp54	100	96.032	Danio_rerio
ENSHGLG00100005263	SRP54	100	100.000	ENSDNOG00000032525	SRP54	100	100.000	Dasypus_novemcinctus
ENSHGLG00100005263	SRP54	89	85.045	ENSDORG00000005159	-	97	85.045	Dipodomys_ordii
ENSHGLG00100005263	SRP54	96	77.526	FBgn0010747	Srp54k	98	77.108	Drosophila_melanogaster
ENSHGLG00100005263	SRP54	100	98.810	ENSETEG00000016307	-	100	98.810	Echinops_telfairi
ENSHGLG00100005263	SRP54	83	58.373	ENSETEG00000012102	-	99	58.373	Echinops_telfairi
ENSHGLG00100005263	SRP54	100	87.500	ENSEBUG00000009437	-	100	87.500	Eptatretus_burgeri
ENSHGLG00100005263	SRP54	100	100.000	ENSEASG00005002057	SRP54	100	100.000	Equus_asinus_asinus
ENSHGLG00100005263	SRP54	99	99.799	ENSECAG00000018042	SRP54	98	99.799	Equus_caballus
ENSHGLG00100005263	SRP54	100	83.333	ENSEEUG00000001511	SRP54	100	83.333	Erinaceus_europaeus
ENSHGLG00100005263	SRP54	100	95.238	ENSELUG00000003395	srp54	100	95.238	Esox_lucius
ENSHGLG00100005263	SRP54	100	99.802	ENSFCAG00000032033	SRP54	100	99.802	Felis_catus
ENSHGLG00100005263	SRP54	100	98.810	ENSFALG00000005995	SRP54	100	98.810	Ficedula_albicollis
ENSHGLG00100005263	SRP54	100	100.000	ENSFDAG00000016767	SRP54	100	100.000	Fukomys_damarensis
ENSHGLG00100005263	SRP54	100	95.437	ENSFHEG00000004263	srp54	100	95.437	Fundulus_heteroclitus
ENSHGLG00100005263	SRP54	95	90.167	ENSGMOG00000011391	srp54	100	90.167	Gadus_morhua
ENSHGLG00100005263	SRP54	100	98.810	ENSGALG00000023135	SRP54	100	98.810	Gallus_gallus
ENSHGLG00100005263	SRP54	100	96.032	ENSGAFG00000011586	srp54	100	96.032	Gambusia_affinis
ENSHGLG00100005263	SRP54	100	95.437	ENSGACG00000004181	srp54	100	95.437	Gasterosteus_aculeatus
ENSHGLG00100005263	SRP54	100	99.206	ENSGAGG00000014766	SRP54	100	99.206	Gopherus_agassizii
ENSHGLG00100005263	SRP54	100	100.000	ENSGGOG00000002926	SRP54	100	100.000	Gorilla_gorilla
ENSHGLG00100005263	SRP54	100	96.032	ENSHBUG00000005678	srp54	100	96.032	Haplochromis_burtoni
ENSHGLG00100005263	SRP54	100	100.000	ENSHGLG00000002850	SRP54	100	100.000	Heterocephalus_glaber_female
ENSHGLG00100005263	SRP54	100	94.048	ENSHCOG00000021127	srp54	100	94.048	Hippocampus_comes
ENSHGLG00100005263	SRP54	100	95.238	ENSIPUG00000001420	srp54	100	95.238	Ictalurus_punctatus
ENSHGLG00100005263	SRP54	100	100.000	ENSSTOG00000016023	SRP54	100	100.000	Ictidomys_tridecemlineatus
ENSHGLG00100005263	SRP54	87	76.591	ENSJJAG00000016404	-	100	76.591	Jaculus_jaculus
ENSHGLG00100005263	SRP54	100	94.841	ENSJJAG00000013417	-	100	94.841	Jaculus_jaculus
ENSHGLG00100005263	SRP54	100	95.437	ENSKMAG00000007707	srp54	100	95.437	Kryptolebias_marmoratus
ENSHGLG00100005263	SRP54	100	95.833	ENSLBEG00000021122	srp54	100	95.833	Labrus_bergylta
ENSHGLG00100005263	SRP54	100	95.833	ENSLBEG00000018690	srp54	100	95.833	Labrus_bergylta
ENSHGLG00100005263	SRP54	100	96.032	ENSLACG00000017890	SRP54	100	96.032	Latimeria_chalumnae
ENSHGLG00100005263	SRP54	100	96.825	ENSLOCG00000009440	srp54	100	96.825	Lepisosteus_oculatus
ENSHGLG00100005263	SRP54	100	100.000	ENSLAFG00000012007	SRP54	100	100.000	Loxodonta_africana
ENSHGLG00100005263	SRP54	100	100.000	ENSMFAG00000044371	SRP54	100	100.000	Macaca_fascicularis
ENSHGLG00100005263	SRP54	100	100.000	ENSMMUG00000015073	FAM177A1	100	100.000	Macaca_mulatta
ENSHGLG00100005263	SRP54	100	100.000	ENSMNEG00000006947	SRP54	100	100.000	Macaca_nemestrina
ENSHGLG00100005263	SRP54	100	100.000	ENSMLEG00000042251	SRP54	100	100.000	Mandrillus_leucophaeus
ENSHGLG00100005263	SRP54	100	96.032	ENSMAMG00000004803	srp54	100	96.032	Mastacembelus_armatus
ENSHGLG00100005263	SRP54	100	96.032	ENSMZEG00005027528	srp54	100	96.032	Maylandia_zebra
ENSHGLG00100005263	SRP54	100	94.071	ENSMGAG00000012481	SRP54	100	94.071	Meleagris_gallopavo
ENSHGLG00100005263	SRP54	100	99.802	ENSMAUG00000014447	-	100	99.802	Mesocricetus_auratus
ENSHGLG00100005263	SRP54	100	100.000	ENSMICG00000010270	SRP54	100	100.000	Microcebus_murinus
ENSHGLG00100005263	SRP54	87	99.773	ENSMOCG00000000948	-	100	99.773	Microtus_ochrogaster
ENSHGLG00100005263	SRP54	89	94.183	ENSMMOG00000020303	srp54	98	94.183	Mola_mola
ENSHGLG00100005263	SRP54	100	99.802	ENSMODG00000023150	-	100	99.802	Monodelphis_domestica
ENSHGLG00100005263	SRP54	100	99.802	ENSMODG00000012925	-	100	99.802	Monodelphis_domestica
ENSHGLG00100005263	SRP54	88	95.485	ENSMALG00000009163	srp54	98	95.485	Monopterus_albus
ENSHGLG00100005263	SRP54	100	99.802	MGP_CAROLIEiJ_G0017754	-	100	99.802	Mus_caroli
ENSHGLG00100005263	SRP54	100	99.802	ENSMUSG00000073079	Srp54a	100	100.000	Mus_musculus
ENSHGLG00100005263	SRP54	100	99.802	ENSMUSG00000112449	Srp54b	100	99.802	Mus_musculus
ENSHGLG00100005263	SRP54	100	99.008	ENSMUSG00000079108	Srp54c	100	99.008	Mus_musculus
ENSHGLG00100005263	SRP54	100	99.802	MGP_PahariEiJ_G0029510	-	100	99.802	Mus_pahari
ENSHGLG00100005263	SRP54	100	100.000	ENSMPUG00000016302	SRP54	100	100.000	Mustela_putorius_furo
ENSHGLG00100005263	SRP54	100	99.405	ENSMLUG00000008958	SRP54	100	99.405	Myotis_lucifugus
ENSHGLG00100005263	SRP54	100	89.881	ENSNGAG00000019806	-	100	89.881	Nannospalax_galili
ENSHGLG00100005263	SRP54	87	95.682	ENSNBRG00000006000	srp54	100	95.682	Neolamprologus_brichardi
ENSHGLG00100005263	SRP54	100	100.000	ENSNLEG00000003496	SRP54	100	100.000	Nomascus_leucogenys
ENSHGLG00100005263	SRP54	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
ENSHGLG00100005263	SRP54	58	100.000	ENSOPRG00000014502	-	60	100.000	Ochotona_princeps
ENSHGLG00100005263	SRP54	100	100.000	ENSODEG00000004865	SRP54	100	100.000	Octodon_degus
ENSHGLG00100005263	SRP54	100	96.032	ENSONIG00000011768	srp54	100	96.032	Oreochromis_niloticus
ENSHGLG00100005263	SRP54	100	100.000	ENSOANG00000014051	SRP54	100	100.000	Ornithorhynchus_anatinus
ENSHGLG00100005263	SRP54	100	99.405	ENSOCUG00000007838	SRP54	100	99.405	Oryctolagus_cuniculus
ENSHGLG00100005263	SRP54	100	95.833	ENSORLG00000010027	srp54	100	95.833	Oryzias_latipes
ENSHGLG00100005263	SRP54	100	95.833	ENSORLG00020001878	srp54	100	95.833	Oryzias_latipes_hni
ENSHGLG00100005263	SRP54	100	95.833	ENSORLG00015021866	srp54	100	95.833	Oryzias_latipes_hsok
ENSHGLG00100005263	SRP54	100	95.635	ENSOMEG00000020952	srp54	100	95.635	Oryzias_melastigma
ENSHGLG00100005263	SRP54	100	100.000	ENSOGAG00000012188	SRP54	100	100.000	Otolemur_garnettii
ENSHGLG00100005263	SRP54	100	100.000	ENSOARG00000007160	SRP54	100	100.000	Ovis_aries
ENSHGLG00100005263	SRP54	100	100.000	ENSPPAG00000017434	SRP54	100	100.000	Pan_paniscus
ENSHGLG00100005263	SRP54	100	98.810	ENSPPRG00000014047	SRP54	100	98.810	Panthera_pardus
ENSHGLG00100005263	SRP54	100	99.802	ENSPTIG00000000744	SRP54	96	99.802	Panthera_tigris_altaica
ENSHGLG00100005263	SRP54	100	100.000	ENSPTRG00000006259	FAM177A1	100	100.000	Pan_troglodytes
ENSHGLG00100005263	SRP54	100	100.000	ENSPANG00000023853	SRP54	100	100.000	Papio_anubis
ENSHGLG00100005263	SRP54	100	95.635	ENSPKIG00000001953	srp54	100	95.635	Paramormyrops_kingsleyae
ENSHGLG00100005263	SRP54	100	99.008	ENSPSIG00000006476	SRP54	100	99.008	Pelodiscus_sinensis
ENSHGLG00100005263	SRP54	91	93.043	ENSPMGG00000004127	srp54	99	93.043	Periophthalmus_magnuspinnatus
ENSHGLG00100005263	SRP54	100	86.905	ENSPEMG00000019634	-	100	86.905	Peromyscus_maniculatus_bairdii
ENSHGLG00100005263	SRP54	100	88.690	ENSPMAG00000006078	-	100	88.690	Petromyzon_marinus
ENSHGLG00100005263	SRP54	100	99.802	ENSPCIG00000016175	SRP54	100	99.802	Phascolarctos_cinereus
ENSHGLG00100005263	SRP54	100	96.032	ENSPFOG00000008870	srp54	100	96.032	Poecilia_formosa
ENSHGLG00100005263	SRP54	100	96.032	ENSPLAG00000009889	srp54	100	96.032	Poecilia_latipinna
ENSHGLG00100005263	SRP54	100	96.032	ENSPMEG00000008601	srp54	100	96.032	Poecilia_mexicana
ENSHGLG00100005263	SRP54	100	96.032	ENSPREG00000004505	srp54	100	96.032	Poecilia_reticulata
ENSHGLG00100005263	SRP54	100	94.841	ENSPPYG00000005739	SRP54	100	94.841	Pongo_abelii
ENSHGLG00100005263	SRP54	100	95.833	ENSPCAG00000006268	SRP54	100	95.833	Procavia_capensis
ENSHGLG00100005263	SRP54	100	98.020	ENSPCOG00000022473	SRP54	100	98.020	Propithecus_coquereli
ENSHGLG00100005263	SRP54	63	100.000	ENSPVAG00000010056	SRP54	82	100.000	Pteropus_vampyrus
ENSHGLG00100005263	SRP54	100	96.032	ENSPNYG00000009717	srp54	100	96.032	Pundamilia_nyererei
ENSHGLG00100005263	SRP54	100	95.833	ENSPNAG00000008544	srp54	100	95.833	Pygocentrus_nattereri
ENSHGLG00100005263	SRP54	100	99.603	ENSRNOG00000032776	Srp54a	100	99.603	Rattus_norvegicus
ENSHGLG00100005263	SRP54	100	100.000	ENSRROG00000041292	SRP54	100	100.000	Rhinopithecus_roxellana
ENSHGLG00100005263	SRP54	86	53.061	YPR088C	SRP54	95	48.276	Saccharomyces_cerevisiae
ENSHGLG00100005263	SRP54	94	100.000	ENSSBOG00000035145	SRP54	100	100.000	Saimiri_boliviensis_boliviensis
ENSHGLG00100005263	SRP54	68	100.000	ENSSHAG00000000671	SRP54	100	100.000	Sarcophilus_harrisii
ENSHGLG00100005263	SRP54	100	96.230	ENSSFOG00015013920	srp54	100	96.230	Scleropages_formosus
ENSHGLG00100005263	SRP54	100	89.888	ENSSMAG00000002441	srp54	100	89.888	Scophthalmus_maximus
ENSHGLG00100005263	SRP54	100	95.635	ENSSDUG00000018586	srp54	100	95.635	Seriola_dumerili
ENSHGLG00100005263	SRP54	100	95.437	ENSSLDG00000010476	srp54	100	95.437	Seriola_lalandi_dorsalis
ENSHGLG00100005263	SRP54	100	100.000	ENSSARG00000002744	SRP54	100	100.000	Sorex_araneus
ENSHGLG00100005263	SRP54	100	99.206	ENSSPUG00000013101	SRP54	100	99.206	Sphenodon_punctatus
ENSHGLG00100005263	SRP54	100	95.833	ENSSPAG00000002354	srp54	100	95.833	Stegastes_partitus
ENSHGLG00100005263	SRP54	100	100.000	ENSSSCG00000001955	SRP54	100	100.000	Sus_scrofa
ENSHGLG00100005263	SRP54	94	98.734	ENSTGUG00000011945	-	95	98.734	Taeniopygia_guttata
ENSHGLG00100005263	SRP54	100	95.040	ENSTRUG00000007057	srp54	100	95.040	Takifugu_rubripes
ENSHGLG00100005263	SRP54	100	94.643	ENSTNIG00000002589	srp54	100	94.643	Tetraodon_nigroviridis
ENSHGLG00100005263	SRP54	89	91.499	ENSTBEG00000011409	SRP54	100	91.499	Tupaia_belangeri
ENSHGLG00100005263	SRP54	100	89.881	ENSTTRG00000000928	SRP54	100	89.881	Tursiops_truncatus
ENSHGLG00100005263	SRP54	52	100.000	ENSUAMG00000012385	SRP54	100	100.000	Ursus_americanus
ENSHGLG00100005263	SRP54	100	100.000	ENSUMAG00000011234	SRP54	100	100.000	Ursus_maritimus
ENSHGLG00100005263	SRP54	94	99.789	ENSVPAG00000005668	SRP54	100	99.789	Vicugna_pacos
ENSHGLG00100005263	SRP54	100	100.000	ENSVVUG00000019962	SRP54	100	100.000	Vulpes_vulpes
ENSHGLG00100005263	SRP54	100	82.249	ENSXETG00000012290	srp54	100	82.249	Xenopus_tropicalis
ENSHGLG00100005263	SRP54	88	95.937	ENSXCOG00000004658	srp54	96	95.937	Xiphophorus_couchianus
ENSHGLG00100005263	SRP54	100	96.032	ENSXMAG00000018315	srp54	100	96.032	Xiphophorus_maculatus