EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100005904 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 16517 bases
Position: chrJH173412.1:197723-214239
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100007921	UPF1_Zn_bind	PF09416.10	6e-75	1	1
ENSHGLP00100007922	UPF1_Zn_bind	PF09416.10	6.4e-75	1	1
ENSHGLP00100007921	ResIII	PF04851.15	2.5e-05	1	1
ENSHGLP00100007922	ResIII	PF04851.15	2.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100008020	UPF1-202	3312	-	ENSHGLP00100007922	1103 (aa)	-	-
ENSHGLT00100008019	UPF1-201	3222	-	ENSHGLP00100007921	1073 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100005904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100005904's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100005904	UPF1	99	95.753	ENSG00000005007	UPF1	96	95.753	Homo_sapiens
ENSHGLG00100005904	UPF1	96	92.023	ENSAPOG00000010916	-	95	92.118	Acanthochromis_polyacanthus
ENSHGLG00100005904	UPF1	96	90.530	ENSAPOG00000023773	upf1	95	90.814	Acanthochromis_polyacanthus
ENSHGLG00100005904	UPF1	99	95.321	ENSAMEG00000011474	UPF1	96	95.321	Ailuropoda_melanoleuca
ENSHGLG00100005904	UPF1	96	90.771	ENSACIG00000019949	upf1	95	90.814	Amphilophus_citrinellus
ENSHGLG00100005904	UPF1	95	91.988	ENSACIG00000010985	-	100	92.085	Amphilophus_citrinellus
ENSHGLG00100005904	UPF1	96	90.010	ENSAOCG00000018519	upf1	95	90.628	Amphiprion_ocellaris
ENSHGLG00100005904	UPF1	96	92.023	ENSAOCG00000006352	-	100	89.595	Amphiprion_ocellaris
ENSHGLG00100005904	UPF1	96	90.010	ENSAPEG00000016344	upf1	95	90.628	Amphiprion_percula
ENSHGLG00100005904	UPF1	96	92.023	ENSAPEG00000006292	-	100	89.595	Amphiprion_percula
ENSHGLG00100005904	UPF1	96	92.023	ENSATEG00000016606	-	95	92.118	Anabas_testudineus
ENSHGLG00100005904	UPF1	96	89.242	ENSATEG00000017867	upf1	95	89.991	Anabas_testudineus
ENSHGLG00100005904	UPF1	96	96.194	ENSAPLG00000009175	UPF1	99	96.194	Anas_platyrhynchos
ENSHGLG00100005904	UPF1	97	96.293	ENSANAG00000024107	UPF1	95	96.293	Aotus_nancymaae
ENSHGLG00100005904	UPF1	96	91.920	ENSACLG00000022630	-	95	91.920	Astatotilapia_calliptera
ENSHGLG00100005904	UPF1	96	90.580	ENSACLG00000007181	upf1	95	90.625	Astatotilapia_calliptera
ENSHGLG00100005904	UPF1	96	92.213	ENSAMXG00000042187	upf1	95	92.783	Astyanax_mexicanus
ENSHGLG00100005904	UPF1	99	95.492	ENSBTAG00000020922	UPF1	96	95.492	Bos_taurus
ENSHGLG00100005904	UPF1	82	52.735	WBGene00004880	smg-2	91	49.952	Caenorhabditis_elegans
ENSHGLG00100005904	UPF1	99	95.753	ENSCJAG00000019627	UPF1	96	95.753	Callithrix_jacchus
ENSHGLG00100005904	UPF1	99	95.753	ENSCAFG00000014578	UPF1	96	95.753	Canis_familiaris
ENSHGLG00100005904	UPF1	99	94.737	ENSCAFG00020012347	UPF1	96	94.737	Canis_lupus_dingo
ENSHGLG00100005904	UPF1	99	95.409	ENSCHIG00000011018	UPF1	96	95.409	Capra_hircus
ENSHGLG00100005904	UPF1	97	97.624	ENSTSYG00000008877	UPF1	99	95.588	Carlito_syrichta
ENSHGLG00100005904	UPF1	97	97.053	ENSCAPG00000005758	UPF1	95	97.053	Cavia_aperea
ENSHGLG00100005904	UPF1	99	94.388	ENSCPOG00000025463	UPF1	98	94.388	Cavia_porcellus
ENSHGLG00100005904	UPF1	99	95.492	ENSCCAG00000032175	UPF1	96	95.492	Cebus_capucinus
ENSHGLG00100005904	UPF1	96	97.615	ENSCATG00000040306	UPF1	98	97.615	Cercocebus_atys
ENSHGLG00100005904	UPF1	99	95.937	ENSCLAG00000004037	UPF1	100	97.909	Chinchilla_lanigera
ENSHGLG00100005904	UPF1	99	94.737	ENSCSAG00000005276	UPF1	96	94.737	Chlorocebus_sabaeus
ENSHGLG00100005904	UPF1	97	94.554	ENSCPBG00000012513	UPF1	95	94.554	Chrysemys_picta_bellii
ENSHGLG00100005904	UPF1	72	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSHGLG00100005904	UPF1	96	73.479	ENSCSAVG00000006533	-	94	73.479	Ciona_savignyi
ENSHGLG00100005904	UPF1	98	96.539	ENSCANG00000029819	UPF1	99	96.539	Colobus_angolensis_palliatus
ENSHGLG00100005904	UPF1	99	94.204	ENSCGRG00001021067	Upf1	96	94.204	Cricetulus_griseus_chok1gshd
ENSHGLG00100005904	UPF1	98	96.439	ENSCGRG00000013480	Upf1	99	96.439	Cricetulus_griseus_crigri
ENSHGLG00100005904	UPF1	96	92.015	ENSCSEG00000016159	-	95	92.015	Cynoglossus_semilaevis
ENSHGLG00100005904	UPF1	96	85.565	ENSCSEG00000017239	upf1	94	85.796	Cynoglossus_semilaevis
ENSHGLG00100005904	UPF1	96	91.738	ENSCVAG00000010561	upf1	95	91.738	Cyprinodon_variegatus
ENSHGLG00100005904	UPF1	96	92.023	ENSDARG00000016302	upf1	95	92.593	Danio_rerio
ENSHGLG00100005904	UPF1	97	94.366	ENSDORG00000009984	Upf1	96	94.366	Dipodomys_ordii
ENSHGLG00100005904	UPF1	81	72.179	FBgn0030354	Upf1	80	68.519	Drosophila_melanogaster
ENSHGLG00100005904	UPF1	51	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSHGLG00100005904	UPF1	99	94.649	ENSEASG00005006549	UPF1	95	94.649	Equus_asinus_asinus
ENSHGLG00100005904	UPF1	99	94.649	ENSECAG00000010639	UPF1	95	94.649	Equus_caballus
ENSHGLG00100005904	UPF1	96	90.557	ENSELUG00000012916	-	95	91.132	Esox_lucius
ENSHGLG00100005904	UPF1	96	89.887	ENSELUG00000020917	upf1	95	90.170	Esox_lucius
ENSHGLG00100005904	UPF1	99	95.660	ENSFCAG00000009757	UPF1	96	95.660	Felis_catus
ENSHGLG00100005904	UPF1	99	93.126	ENSFALG00000009312	UPF1	99	93.126	Ficedula_albicollis
ENSHGLG00100005904	UPF1	97	97.828	ENSFDAG00000014816	UPF1	100	97.814	Fukomys_damarensis
ENSHGLG00100005904	UPF1	89	92.910	ENSFHEG00000016276	-	96	92.910	Fundulus_heteroclitus
ENSHGLG00100005904	UPF1	96	87.759	ENSFHEG00000006428	upf1	94	87.759	Fundulus_heteroclitus
ENSHGLG00100005904	UPF1	96	91.738	ENSGMOG00000007541	upf1	95	92.213	Gadus_morhua
ENSHGLG00100005904	UPF1	97	95.292	ENSGALG00000003220	UPF1	94	95.292	Gallus_gallus
ENSHGLG00100005904	UPF1	64	91.631	ENSGAFG00000015443	-	88	89.423	Gambusia_affinis
ENSHGLG00100005904	UPF1	96	91.635	ENSGAFG00000004831	upf1	95	91.635	Gambusia_affinis
ENSHGLG00100005904	UPF1	96	95.814	ENSGAGG00000022217	UPF1	96	94.069	Gopherus_agassizii
ENSHGLG00100005904	UPF1	97	96.581	ENSGGOG00000002608	UPF1	99	96.581	Gorilla_gorilla
ENSHGLG00100005904	UPF1	83	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSHGLG00100005904	UPF1	82	89.157	ENSHBUG00000014694	upf1	90	89.157	Haplochromis_burtoni
ENSHGLG00100005904	UPF1	99	96.864	ENSHGLG00000010900	UPF1	96	96.399	Heterocephalus_glaber_female
ENSHGLG00100005904	UPF1	96	91.160	ENSHCOG00000008918	upf1	100	91.196	Hippocampus_comes
ENSHGLG00100005904	UPF1	96	92.688	ENSIPUG00000005108	UPF1	95	93.162	Ictalurus_punctatus
ENSHGLG00100005904	UPF1	99	96.030	ENSSTOG00000009196	UPF1	95	96.030	Ictidomys_tridecemlineatus
ENSHGLG00100005904	UPF1	99	95.383	ENSJJAG00000023151	Upf1	96	95.383	Jaculus_jaculus
ENSHGLG00100005904	UPF1	96	92.023	ENSKMAG00000004962	upf1	95	92.023	Kryptolebias_marmoratus
ENSHGLG00100005904	UPF1	96	88.941	ENSLBEG00000014862	upf1	95	89.972	Labrus_bergylta
ENSHGLG00100005904	UPF1	96	91.833	ENSLBEG00000027848	-	95	91.928	Labrus_bergylta
ENSHGLG00100005904	UPF1	63	94.548	ENSLACG00000008482	UPF1	100	94.548	Latimeria_chalumnae
ENSHGLG00100005904	UPF1	96	94.202	ENSLOCG00000002072	upf1	95	94.297	Lepisosteus_oculatus
ENSHGLG00100005904	UPF1	99	94.664	ENSLAFG00000014963	UPF1	96	94.664	Loxodonta_africana
ENSHGLG00100005904	UPF1	99	95.753	ENSMFAG00000037748	UPF1	96	95.753	Macaca_fascicularis
ENSHGLG00100005904	UPF1	99	95.845	ENSMMUG00000023286	UPF1	96	95.845	Macaca_mulatta
ENSHGLG00100005904	UPF1	99	95.753	ENSMNEG00000000046	UPF1	96	95.753	Macaca_nemestrina
ENSHGLG00100005904	UPF1	97	97.624	ENSMLEG00000028404	UPF1	100	97.624	Mandrillus_leucophaeus
ENSHGLG00100005904	UPF1	96	89.149	ENSMAMG00000006229	upf1	95	90.084	Mastacembelus_armatus
ENSHGLG00100005904	UPF1	96	91.358	ENSMAMG00000006231	-	95	91.738	Mastacembelus_armatus
ENSHGLG00100005904	UPF1	96	89.159	ENSMZEG00005003489	upf1	95	90.226	Maylandia_zebra
ENSHGLG00100005904	UPF1	96	91.920	ENSMZEG00005016386	-	95	91.920	Maylandia_zebra
ENSHGLG00100005904	UPF1	96	95.722	ENSMGAG00000004745	UPF1	100	95.722	Meleagris_gallopavo
ENSHGLG00100005904	UPF1	97	97.243	ENSMAUG00000011398	Upf1	95	97.243	Mesocricetus_auratus
ENSHGLG00100005904	UPF1	99	94.922	ENSMICG00000001659	UPF1	96	94.922	Microcebus_murinus
ENSHGLG00100005904	UPF1	99	94.940	ENSMOCG00000005699	Upf1	96	94.940	Microtus_ochrogaster
ENSHGLG00100005904	UPF1	96	92.478	ENSMMOG00000007537	-	99	92.575	Mola_mola
ENSHGLG00100005904	UPF1	96	90.267	ENSMMOG00000007881	upf1	94	90.658	Mola_mola
ENSHGLG00100005904	UPF1	99	94.322	ENSMODG00000003689	UPF1	95	95.814	Monodelphis_domestica
ENSHGLG00100005904	UPF1	96	90.737	ENSMALG00000018100	-	95	90.832	Monopterus_albus
ENSHGLG00100005904	UPF1	96	90.200	ENSMALG00000000144	upf1	95	90.390	Monopterus_albus
ENSHGLG00100005904	UPF1	99	95.032	MGP_CAROLIEiJ_G0031142	Upf1	96	95.032	Mus_caroli
ENSHGLG00100005904	UPF1	99	95.032	ENSMUSG00000058301	Upf1	96	95.032	Mus_musculus
ENSHGLG00100005904	UPF1	99	95.032	MGP_PahariEiJ_G0021607	Upf1	96	95.032	Mus_pahari
ENSHGLG00100005904	UPF1	99	95.032	MGP_SPRETEiJ_G0032260	Upf1	96	95.032	Mus_spretus
ENSHGLG00100005904	UPF1	99	94.737	ENSMPUG00000015516	UPF1	96	94.737	Mustela_putorius_furo
ENSHGLG00100005904	UPF1	99	94.649	ENSMLUG00000012122	UPF1	96	94.649	Myotis_lucifugus
ENSHGLG00100005904	UPF1	99	95.032	ENSNGAG00000024107	Upf1	96	95.032	Nannospalax_galili
ENSHGLG00100005904	UPF1	95	91.058	ENSNBRG00000022069	-	100	91.058	Neolamprologus_brichardi
ENSHGLG00100005904	UPF1	96	88.773	ENSNBRG00000000670	upf1	95	88.826	Neolamprologus_brichardi
ENSHGLG00100005904	UPF1	97	91.825	ENSNLEG00000006062	UPF1	100	91.825	Nomascus_leucogenys
ENSHGLG00100005904	UPF1	79	89.804	ENSMEUG00000014146	-	79	89.804	Notamacropus_eugenii
ENSHGLG00100005904	UPF1	97	88.688	ENSOPRG00000014018	UPF1	100	88.688	Ochotona_princeps
ENSHGLG00100005904	UPF1	98	96.726	ENSODEG00000012426	UPF1	96	96.726	Octodon_degus
ENSHGLG00100005904	UPF1	96	92.015	ENSONIG00000012729	-	95	92.015	Oreochromis_niloticus
ENSHGLG00100005904	UPF1	96	89.439	ENSONIG00000010452	upf1	95	90.508	Oreochromis_niloticus
ENSHGLG00100005904	UPF1	97	95.677	ENSOANG00000004568	UPF1	94	95.677	Ornithorhynchus_anatinus
ENSHGLG00100005904	UPF1	96	91.738	ENSORLG00000008453	upf1	95	91.738	Oryzias_latipes
ENSHGLG00100005904	UPF1	96	91.738	ENSORLG00020014758	upf1	95	91.738	Oryzias_latipes_hni
ENSHGLG00100005904	UPF1	96	91.738	ENSORLG00015010165	upf1	100	87.861	Oryzias_latipes_hsok
ENSHGLG00100005904	UPF1	96	91.738	ENSOMEG00000003665	upf1	95	91.738	Oryzias_melastigma
ENSHGLG00100005904	UPF1	99	94.829	ENSOGAG00000012866	UPF1	96	94.829	Otolemur_garnettii
ENSHGLG00100005904	UPF1	93	97.140	ENSOARG00000010739	UPF1	93	97.239	Ovis_aries
ENSHGLG00100005904	UPF1	99	95.741	ENSPPAG00000043884	UPF1	99	95.741	Pan_paniscus
ENSHGLG00100005904	UPF1	99	95.660	ENSPPRG00000023470	UPF1	96	95.660	Panthera_pardus
ENSHGLG00100005904	UPF1	96	96.812	ENSPTIG00000010159	UPF1	99	96.812	Panthera_tigris_altaica
ENSHGLG00100005904	UPF1	99	95.753	ENSPTRG00000010721	UPF1	96	95.753	Pan_troglodytes
ENSHGLG00100005904	UPF1	99	95.753	ENSPANG00000008847	UPF1	96	95.753	Papio_anubis
ENSHGLG00100005904	UPF1	90	92.012	ENSPKIG00000006069	upf1	91	94.848	Paramormyrops_kingsleyae
ENSHGLG00100005904	UPF1	70	96.966	ENSPSIG00000009491	UPF1	100	96.966	Pelodiscus_sinensis
ENSHGLG00100005904	UPF1	96	88.341	ENSPMGG00000017327	upf1	95	88.553	Periophthalmus_magnuspinnatus
ENSHGLG00100005904	UPF1	99	95.216	ENSPEMG00000001085	Upf1	96	95.216	Peromyscus_maniculatus_bairdii
ENSHGLG00100005904	UPF1	99	85.596	ENSPMAG00000001206	upf1	96	85.596	Petromyzon_marinus
ENSHGLG00100005904	UPF1	99	93.658	ENSPCIG00000006156	UPF1	96	93.658	Phascolarctos_cinereus
ENSHGLG00100005904	UPF1	96	89.171	ENSPLAG00000018155	-	95	89.171	Poecilia_latipinna
ENSHGLG00100005904	UPF1	96	91.730	ENSPLAG00000016232	-	95	91.730	Poecilia_latipinna
ENSHGLG00100005904	UPF1	96	89.564	ENSPMEG00000011443	-	95	89.564	Poecilia_mexicana
ENSHGLG00100005904	UPF1	96	91.825	ENSPMEG00000016319	-	95	91.825	Poecilia_mexicana
ENSHGLG00100005904	UPF1	96	89.577	ENSPREG00000009940	upf1	94	89.577	Poecilia_reticulata
ENSHGLG00100005904	UPF1	96	91.540	ENSPREG00000011247	-	95	91.540	Poecilia_reticulata
ENSHGLG00100005904	UPF1	99	90.674	ENSPPYG00000009752	UPF1	96	90.674	Pongo_abelii
ENSHGLG00100005904	UPF1	70	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSHGLG00100005904	UPF1	99	96.093	ENSPCOG00000023813	UPF1	96	96.093	Propithecus_coquereli
ENSHGLG00100005904	UPF1	68	100.000	ENSPVAG00000003183	UPF1	64	100.000	Pteropus_vampyrus
ENSHGLG00100005904	UPF1	96	89.159	ENSPNYG00000003694	upf1	95	90.226	Pundamilia_nyererei
ENSHGLG00100005904	UPF1	96	91.920	ENSPNYG00000016731	-	95	91.920	Pundamilia_nyererei
ENSHGLG00100005904	UPF1	96	92.403	ENSPNAG00000025614	upf1	95	92.972	Pygocentrus_nattereri
ENSHGLG00100005904	UPF1	99	95.124	ENSRNOG00000020134	Upf1	96	95.124	Rattus_norvegicus
ENSHGLG00100005904	UPF1	97	95.252	ENSRBIG00000013894	UPF1	98	95.887	Rhinopithecus_bieti
ENSHGLG00100005904	UPF1	99	95.926	ENSRROG00000040935	UPF1	99	95.926	Rhinopithecus_roxellana
ENSHGLG00100005904	UPF1	74	56.119	YMR080C	NAM7	82	56.119	Saccharomyces_cerevisiae
ENSHGLG00100005904	UPF1	96	97.524	ENSSBOG00000023632	UPF1	96	97.524	Saimiri_boliviensis_boliviensis
ENSHGLG00100005904	UPF1	96	96.676	ENSSHAG00000010499	UPF1	100	96.676	Sarcophilus_harrisii
ENSHGLG00100005904	UPF1	96	94.202	ENSSFOG00015021095	upf1	99	94.202	Scleropages_formosus
ENSHGLG00100005904	UPF1	96	88.472	ENSSMAG00000005055	upf1	95	89.232	Scophthalmus_maximus
ENSHGLG00100005904	UPF1	96	92.023	ENSSMAG00000021018	-	95	92.118	Scophthalmus_maximus
ENSHGLG00100005904	UPF1	96	89.336	ENSSDUG00000013320	upf1	95	90.271	Seriola_dumerili
ENSHGLG00100005904	UPF1	96	92.213	ENSSDUG00000009629	-	95	92.308	Seriola_dumerili
ENSHGLG00100005904	UPF1	96	90.179	ENSSLDG00000020868	upf1	95	90.669	Seriola_lalandi_dorsalis
ENSHGLG00100005904	UPF1	96	92.213	ENSSLDG00000006878	-	95	92.308	Seriola_lalandi_dorsalis
ENSHGLG00100005904	UPF1	97	95.202	ENSSPUG00000010538	UPF1	95	95.202	Sphenodon_punctatus
ENSHGLG00100005904	UPF1	96	88.297	ENSSPAG00000000003	upf1	95	88.341	Stegastes_partitus
ENSHGLG00100005904	UPF1	96	92.015	ENSSPAG00000011521	-	95	92.015	Stegastes_partitus
ENSHGLG00100005904	UPF1	99	95.400	ENSSSCG00000039301	UPF1	99	96.480	Sus_scrofa
ENSHGLG00100005904	UPF1	78	89.340	ENSTGUG00000001057	UPF1	89	97.329	Taeniopygia_guttata
ENSHGLG00100005904	UPF1	96	90.304	ENSTRUG00000000150	upf1	95	90.399	Takifugu_rubripes
ENSHGLG00100005904	UPF1	96	91.065	ENSTRUG00000005131	-	95	91.160	Takifugu_rubripes
ENSHGLG00100005904	UPF1	98	91.667	ENSTTRG00000011544	UPF1	96	90.642	Tursiops_truncatus
ENSHGLG00100005904	UPF1	99	94.645	ENSUAMG00000007093	UPF1	96	94.645	Ursus_americanus
ENSHGLG00100005904	UPF1	97	96.802	ENSUMAG00000006652	UPF1	99	96.802	Ursus_maritimus
ENSHGLG00100005904	UPF1	99	94.737	ENSVVUG00000007797	UPF1	96	94.737	Vulpes_vulpes
ENSHGLG00100005904	UPF1	97	83.794	ENSXETG00000013602	upf1	96	82.173	Xenopus_tropicalis
ENSHGLG00100005904	UPF1	93	89.261	ENSXCOG00000015275	-	91	89.360	Xiphophorus_couchianus
ENSHGLG00100005904	UPF1	96	91.939	ENSXCOG00000005764	-	100	91.939	Xiphophorus_couchianus
ENSHGLG00100005904	UPF1	96	89.544	ENSXMAG00000001703	-	95	89.544	Xiphophorus_maculatus
ENSHGLG00100005904	UPF1	96	91.635	ENSXMAG00000002540	-	95	91.635	Xiphophorus_maculatus