EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100007894 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 5904 bases
Position: chrJH168446.1:46446-52349
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100010623	LSM	PF01423.22	2.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100010747	LSM4-201	279	-	ENSHGLP00100010623	93 (aa)	-	-
ENSHGLT00100010748	LSM4-202	180	-	ENSHGLP00100010624	60 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100007894's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100007894's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100007894	LSM4	83	35.000	ENSHGLG00100017194	LSM2	82	35.000
ENSHGLG00100007894	LSM4	75	30.000	ENSHGLG00100001769	LSM10	56	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100007894	LSM4	100	100.000	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSHGLG00100007894	LSM4	99	98.913	ENSAPOG00000005643	lsm4	61	98.913	Acanthochromis_polyacanthus
ENSHGLG00100007894	LSM4	100	98.925	ENSAMEG00000011162	LSM4	64	98.925	Ailuropoda_melanoleuca
ENSHGLG00100007894	LSM4	99	98.913	ENSAOCG00000006414	lsm4	62	98.913	Amphiprion_ocellaris
ENSHGLG00100007894	LSM4	99	98.913	ENSAPEG00000006238	lsm4	62	98.913	Amphiprion_percula
ENSHGLG00100007894	LSM4	99	98.913	ENSATEG00000016559	lsm4	61	98.913	Anabas_testudineus
ENSHGLG00100007894	LSM4	100	100.000	ENSANAG00000034659	LSM4	67	100.000	Aotus_nancymaae
ENSHGLG00100007894	LSM4	99	98.913	ENSACLG00000022738	lsm4	63	98.913	Astatotilapia_calliptera
ENSHGLG00100007894	LSM4	100	96.774	ENSAMXG00000016932	lsm4	65	96.774	Astyanax_mexicanus
ENSHGLG00100007894	LSM4	100	100.000	ENSBTAG00000008578	LSM4	67	100.000	Bos_taurus
ENSHGLG00100007894	LSM4	89	75.904	WBGene00003078	lsm-4	81	68.000	Caenorhabditis_elegans
ENSHGLG00100007894	LSM4	100	100.000	ENSCJAG00000014171	LSM4	67	100.000	Callithrix_jacchus
ENSHGLG00100007894	LSM4	100	100.000	ENSCAFG00000014900	LSM4	61	100.000	Canis_familiaris
ENSHGLG00100007894	LSM4	100	100.000	ENSCAFG00020012137	LSM4	67	100.000	Canis_lupus_dingo
ENSHGLG00100007894	LSM4	100	98.925	ENSCHIG00000010928	LSM4	62	98.925	Capra_hircus
ENSHGLG00100007894	LSM4	100	98.925	ENSTSYG00000030906	LSM4	67	98.925	Carlito_syrichta
ENSHGLG00100007894	LSM4	100	98.925	ENSCAPG00000014140	LSM4	67	98.925	Cavia_aperea
ENSHGLG00100007894	LSM4	100	98.925	ENSCPOG00000024117	LSM4	67	98.925	Cavia_porcellus
ENSHGLG00100007894	LSM4	100	100.000	ENSCCAG00000036308	LSM4	67	100.000	Cebus_capucinus
ENSHGLG00100007894	LSM4	100	100.000	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSHGLG00100007894	LSM4	100	100.000	ENSCLAG00000010828	LSM4	67	100.000	Chinchilla_lanigera
ENSHGLG00100007894	LSM4	100	100.000	ENSCSAG00000005370	LSM4	67	100.000	Chlorocebus_sabaeus
ENSHGLG00100007894	LSM4	100	97.849	ENSCPBG00000012925	LSM4	67	97.849	Chrysemys_picta_bellii
ENSHGLG00100007894	LSM4	92	91.860	ENSCING00000007519	-	72	91.304	Ciona_intestinalis
ENSHGLG00100007894	LSM4	92	93.023	ENSCSAVG00000008596	-	74	92.391	Ciona_savignyi
ENSHGLG00100007894	LSM4	100	100.000	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSHGLG00100007894	LSM4	99	96.739	ENSCGRG00001014436	Lsm4	66	96.739	Cricetulus_griseus_chok1gshd
ENSHGLG00100007894	LSM4	98	96.703	ENSCGRG00000009398	Lsm4	66	96.703	Cricetulus_griseus_crigri
ENSHGLG00100007894	LSM4	99	97.826	ENSCSEG00000016127	lsm4	65	97.826	Cynoglossus_semilaevis
ENSHGLG00100007894	LSM4	99	97.826	ENSCVAG00000010601	lsm4	64	97.826	Cyprinodon_variegatus
ENSHGLG00100007894	LSM4	84	96.154	ENSCVAG00000021828	lsm4	60	96.154	Cyprinodon_variegatus
ENSHGLG00100007894	LSM4	100	97.849	ENSDARG00000023852	lsm4	65	97.849	Danio_rerio
ENSHGLG00100007894	LSM4	100	98.925	ENSDORG00000024225	Lsm4	67	98.925	Dipodomys_ordii
ENSHGLG00100007894	LSM4	97	87.778	FBgn0032240	CG17768	58	87.778	Drosophila_melanogaster
ENSHGLG00100007894	LSM4	84	98.718	ENSETEG00000007762	-	63	98.718	Echinops_telfairi
ENSHGLG00100007894	LSM4	86	88.750	ENSEBUG00000003639	-	63	78.947	Eptatretus_burgeri
ENSHGLG00100007894	LSM4	99	97.826	ENSELUG00000012821	lsm4	70	97.826	Esox_lucius
ENSHGLG00100007894	LSM4	100	100.000	ENSFCAG00000040580	LSM4	67	100.000	Felis_catus
ENSHGLG00100007894	LSM4	100	96.774	ENSFALG00000009478	LSM4	67	96.774	Ficedula_albicollis
ENSHGLG00100007894	LSM4	99	100.000	ENSFDAG00000010124	LSM4	67	100.000	Fukomys_damarensis
ENSHGLG00100007894	LSM4	51	100.000	ENSFHEG00000016353	lsm4	80	100.000	Fundulus_heteroclitus
ENSHGLG00100007894	LSM4	99	97.826	ENSGMOG00000007729	lsm4	63	97.826	Gadus_morhua
ENSHGLG00100007894	LSM4	100	97.849	ENSGALG00000003385	LSM4	67	97.849	Gallus_gallus
ENSHGLG00100007894	LSM4	99	97.826	ENSGAFG00000004903	lsm4	58	94.805	Gambusia_affinis
ENSHGLG00100007894	LSM4	99	98.913	ENSGACG00000008140	lsm4	61	98.913	Gasterosteus_aculeatus
ENSHGLG00100007894	LSM4	100	97.849	ENSGAGG00000017812	LSM4	67	97.849	Gopherus_agassizii
ENSHGLG00100007894	LSM4	100	100.000	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSHGLG00100007894	LSM4	99	98.913	ENSHBUG00000008858	lsm4	52	98.913	Haplochromis_burtoni
ENSHGLG00100007894	LSM4	100	100.000	ENSHGLG00000006568	LSM4	67	100.000	Heterocephalus_glaber_female
ENSHGLG00100007894	LSM4	99	98.913	ENSHCOG00000008819	lsm4	65	98.913	Hippocampus_comes
ENSHGLG00100007894	LSM4	100	97.849	ENSIPUG00000005368	Lsm4	65	97.849	Ictalurus_punctatus
ENSHGLG00100007894	LSM4	100	100.000	ENSSTOG00000016494	LSM4	67	100.000	Ictidomys_tridecemlineatus
ENSHGLG00100007894	LSM4	99	97.826	ENSJJAG00000017420	Lsm4	66	97.826	Jaculus_jaculus
ENSHGLG00100007894	LSM4	99	97.826	ENSKMAG00000005073	lsm4	64	97.826	Kryptolebias_marmoratus
ENSHGLG00100007894	LSM4	99	98.913	ENSLBEG00000027930	lsm4	62	98.913	Labrus_bergylta
ENSHGLG00100007894	LSM4	100	97.849	ENSLACG00000015861	LSM4	66	97.849	Latimeria_chalumnae
ENSHGLG00100007894	LSM4	100	96.774	ENSLOCG00000002025	lsm4	66	96.774	Lepisosteus_oculatus
ENSHGLG00100007894	LSM4	100	97.849	ENSLAFG00000017459	LSM4	67	97.849	Loxodonta_africana
ENSHGLG00100007894	LSM4	100	100.000	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSHGLG00100007894	LSM4	100	100.000	ENSMMUG00000004405	LSM4	67	100.000	Macaca_mulatta
ENSHGLG00100007894	LSM4	100	100.000	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSHGLG00100007894	LSM4	100	100.000	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSHGLG00100007894	LSM4	99	98.913	ENSMAMG00000006190	lsm4	65	98.913	Mastacembelus_armatus
ENSHGLG00100007894	LSM4	99	98.913	ENSMZEG00005016420	lsm4	63	98.913	Maylandia_zebra
ENSHGLG00100007894	LSM4	100	96.774	ENSMGAG00000004976	LSM4	67	96.774	Meleagris_gallopavo
ENSHGLG00100007894	LSM4	100	100.000	ENSMICG00000000222	LSM4	67	100.000	Microcebus_murinus
ENSHGLG00100007894	LSM4	99	96.739	ENSMOCG00000020861	Lsm4	66	96.739	Microtus_ochrogaster
ENSHGLG00100007894	LSM4	84	97.436	ENSMODG00000015044	-	63	97.436	Monodelphis_domestica
ENSHGLG00100007894	LSM4	99	97.826	ENSMALG00000018159	lsm4	64	97.826	Monopterus_albus
ENSHGLG00100007894	LSM4	99	96.739	MGP_CAROLIEiJ_G0031158	Lsm4	66	96.739	Mus_caroli
ENSHGLG00100007894	LSM4	99	96.739	ENSMUSG00000031848	Lsm4	89	90.217	Mus_musculus
ENSHGLG00100007894	LSM4	99	96.739	MGP_PahariEiJ_G0021623	Lsm4	66	96.739	Mus_pahari
ENSHGLG00100007894	LSM4	99	96.739	MGP_SPRETEiJ_G0032276	Lsm4	66	96.739	Mus_spretus
ENSHGLG00100007894	LSM4	100	100.000	ENSMPUG00000015589	LSM4	67	100.000	Mustela_putorius_furo
ENSHGLG00100007894	LSM4	100	98.925	ENSMLUG00000004010	LSM4	67	98.925	Myotis_lucifugus
ENSHGLG00100007894	LSM4	99	96.739	ENSNGAG00000008644	Lsm4	66	96.739	Nannospalax_galili
ENSHGLG00100007894	LSM4	98	98.901	ENSNBRG00000022150	lsm4	56	98.901	Neolamprologus_brichardi
ENSHGLG00100007894	LSM4	78	95.890	ENSMEUG00000013229	LSM4	63	94.872	Notamacropus_eugenii
ENSHGLG00100007894	LSM4	84	98.718	ENSOPRG00000005575	LSM4	66	98.718	Ochotona_princeps
ENSHGLG00100007894	LSM4	95	89.773	ENSODEG00000004519	-	67	89.247	Octodon_degus
ENSHGLG00100007894	LSM4	100	100.000	ENSODEG00000020549	-	67	100.000	Octodon_degus
ENSHGLG00100007894	LSM4	100	64.516	ENSODEG00000011712	-	57	64.516	Octodon_degus
ENSHGLG00100007894	LSM4	99	98.913	ENSONIG00000012724	lsm4	63	98.913	Oreochromis_niloticus
ENSHGLG00100007894	LSM4	99	92.708	ENSOANG00000007434	LSM4	83	92.708	Ornithorhynchus_anatinus
ENSHGLG00100007894	LSM4	99	97.826	ENSORLG00000008391	lsm4	64	97.826	Oryzias_latipes
ENSHGLG00100007894	LSM4	99	97.826	ENSORLG00020014829	lsm4	64	97.826	Oryzias_latipes_hni
ENSHGLG00100007894	LSM4	99	97.826	ENSORLG00015010205	lsm4	64	97.826	Oryzias_latipes_hsok
ENSHGLG00100007894	LSM4	99	97.826	ENSOMEG00000003606	lsm4	64	97.826	Oryzias_melastigma
ENSHGLG00100007894	LSM4	100	98.925	ENSOGAG00000027992	LSM4	64	98.925	Otolemur_garnettii
ENSHGLG00100007894	LSM4	99	100.000	ENSOARG00000012553	LSM4	63	100.000	Ovis_aries
ENSHGLG00100007894	LSM4	100	100.000	ENSPPAG00000044045	-	67	100.000	Pan_paniscus
ENSHGLG00100007894	LSM4	100	100.000	ENSPPRG00000018264	LSM4	67	100.000	Panthera_pardus
ENSHGLG00100007894	LSM4	99	100.000	ENSPTIG00000006306	LSM4	67	100.000	Panthera_tigris_altaica
ENSHGLG00100007894	LSM4	100	100.000	ENSPTRG00000031470	LSM4	67	100.000	Pan_troglodytes
ENSHGLG00100007894	LSM4	100	100.000	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSHGLG00100007894	LSM4	100	97.849	ENSPKIG00000006154	lsm4	66	97.849	Paramormyrops_kingsleyae
ENSHGLG00100007894	LSM4	99	97.826	ENSPSIG00000012358	LSM4	67	97.826	Pelodiscus_sinensis
ENSHGLG00100007894	LSM4	99	96.739	ENSPEMG00000001358	Lsm4	66	96.739	Peromyscus_maniculatus_bairdii
ENSHGLG00100007894	LSM4	99	98.913	ENSPLAG00000016267	lsm4	64	98.913	Poecilia_latipinna
ENSHGLG00100007894	LSM4	99	98.913	ENSPMEG00000016378	lsm4	66	97.826	Poecilia_mexicana
ENSHGLG00100007894	LSM4	100	100.000	ENSPPYG00000009736	LSM4	67	100.000	Pongo_abelii
ENSHGLG00100007894	LSM4	84	98.718	ENSPCAG00000008513	LSM4	63	98.718	Procavia_capensis
ENSHGLG00100007894	LSM4	100	100.000	ENSPCOG00000019837	LSM4	67	100.000	Propithecus_coquereli
ENSHGLG00100007894	LSM4	100	100.000	ENSPVAG00000015383	LSM4	67	100.000	Pteropus_vampyrus
ENSHGLG00100007894	LSM4	99	98.913	ENSPNYG00000016794	lsm4	63	98.913	Pundamilia_nyererei
ENSHGLG00100007894	LSM4	99	97.826	ENSPNAG00000016598	lsm4	69	97.826	Pygocentrus_nattereri
ENSHGLG00100007894	LSM4	99	96.739	ENSRNOG00000019572	Lsm4	66	96.739	Rattus_norvegicus
ENSHGLG00100007894	LSM4	100	100.000	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSHGLG00100007894	LSM4	100	100.000	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSHGLG00100007894	LSM4	89	40.860	YER112W	LSM4	51	40.000	Saccharomyces_cerevisiae
ENSHGLG00100007894	LSM4	85	100.000	ENSSBOG00000022455	LSM4	63	100.000	Saimiri_boliviensis_boliviensis
ENSHGLG00100007894	LSM4	100	97.849	ENSSHAG00000011559	LSM4	67	97.849	Sarcophilus_harrisii
ENSHGLG00100007894	LSM4	100	97.849	ENSSFOG00015021067	lsm4	66	97.849	Scleropages_formosus
ENSHGLG00100007894	LSM4	99	98.913	ENSSMAG00000021020	lsm4	61	98.913	Scophthalmus_maximus
ENSHGLG00100007894	LSM4	99	98.913	ENSSDUG00000009588	lsm4	55	98.913	Seriola_dumerili
ENSHGLG00100007894	LSM4	99	98.913	ENSSLDG00000006827	lsm4	55	98.913	Seriola_lalandi_dorsalis
ENSHGLG00100007894	LSM4	99	97.826	ENSSPUG00000010166	LSM4	59	97.826	Sphenodon_punctatus
ENSHGLG00100007894	LSM4	99	98.913	ENSSPAG00000011615	lsm4	61	98.913	Stegastes_partitus
ENSHGLG00100007894	LSM4	100	100.000	ENSSSCG00000034314	LSM4	67	100.000	Sus_scrofa
ENSHGLG00100007894	LSM4	99	96.739	ENSTRUG00000021737	lsm4	64	96.739	Takifugu_rubripes
ENSHGLG00100007894	LSM4	99	97.826	ENSTNIG00000010191	lsm4	64	97.826	Tetraodon_nigroviridis
ENSHGLG00100007894	LSM4	100	100.000	ENSUAMG00000000665	LSM4	77	100.000	Ursus_americanus
ENSHGLG00100007894	LSM4	100	100.000	ENSUMAG00000009013	LSM4	67	100.000	Ursus_maritimus
ENSHGLG00100007894	LSM4	100	96.774	ENSXETG00000024933	lsm4	67	96.774	Xenopus_tropicalis