EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100007962 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 31953 bases
Position: chrJH170789.1:1323447-1355399
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100010717	RRM_1	PF00076.22	6.3e-33	1	2
ENSHGLP00100010717	RRM_1	PF00076.22	6.3e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100010843	PSPC1-201	981	-	ENSHGLP00100010717	327 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100007962's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100007962's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100007962	PSPC1	88	74.394	ENSHGLG00100013511	NONO	61	74.394
ENSHGLG00100007962	PSPC1	64	75.598	ENSHGLG00100004136	-	60	75.598

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100007962	PSPC1	100	92.286	ENSG00000121390	PSPC1	100	89.113	Homo_sapiens
ENSHGLG00100007962	PSPC1	92	78.667	ENSAPOG00000015946	pspc1	64	77.091	Acanthochromis_polyacanthus
ENSHGLG00100007962	PSPC1	100	93.103	ENSAMEG00000017420	PSPC1	67	93.103	Ailuropoda_melanoleuca
ENSHGLG00100007962	PSPC1	80	78.244	ENSACIG00000018695	pspc1	53	78.764	Amphilophus_citrinellus
ENSHGLG00100007962	PSPC1	92	78.000	ENSAOCG00000005279	pspc1	64	76.173	Amphiprion_ocellaris
ENSHGLG00100007962	PSPC1	92	78.000	ENSAPEG00000015927	pspc1	64	76.173	Amphiprion_percula
ENSHGLG00100007962	PSPC1	84	76.277	ENSATEG00000004878	pspc1	56	74.476	Anabas_testudineus
ENSHGLG00100007962	PSPC1	70	96.957	ENSAPLG00000006246	PSPC1	57	96.957	Anas_platyrhynchos
ENSHGLG00100007962	PSPC1	88	76.125	ENSAPLG00000003643	SFPQ	56	76.125	Anas_platyrhynchos
ENSHGLG00100007962	PSPC1	98	85.879	ENSACAG00000002093	PSPC1	66	85.920	Anolis_carolinensis
ENSHGLG00100007962	PSPC1	100	93.103	ENSANAG00000000059	PSPC1	89	93.103	Aotus_nancymaae
ENSHGLG00100007962	PSPC1	80	76.806	ENSACLG00000027220	pspc1	55	76.806	Astatotilapia_calliptera
ENSHGLG00100007962	PSPC1	92	80.667	ENSAMXG00000036881	pspc1	62	73.952	Astyanax_mexicanus
ENSHGLG00100007962	PSPC1	100	92.219	ENSBTAG00000003934	PSPC1	67	92.219	Bos_taurus
ENSHGLG00100007962	PSPC1	100	93.103	ENSCJAG00000004554	PSPC1	67	93.103	Callithrix_jacchus
ENSHGLG00100007962	PSPC1	100	93.103	ENSCAFG00020002009	PSPC1	89	93.103	Canis_lupus_dingo
ENSHGLG00100007962	PSPC1	100	92.219	ENSCHIG00000016708	PSPC1	67	92.219	Capra_hircus
ENSHGLG00100007962	PSPC1	61	100.000	ENSTSYG00000032882	PSPC1	50	92.202	Carlito_syrichta
ENSHGLG00100007962	PSPC1	100	93.948	ENSCPOG00000000395	PSPC1	89	93.948	Cavia_porcellus
ENSHGLG00100007962	PSPC1	100	93.103	ENSCCAG00000033498	PSPC1	67	93.103	Cebus_capucinus
ENSHGLG00100007962	PSPC1	100	92.286	ENSCATG00000036434	PSPC1	83	97.682	Cercocebus_atys
ENSHGLG00100007962	PSPC1	88	83.103	ENSCLAG00000005241	PSPC1	61	83.103	Chinchilla_lanigera
ENSHGLG00100007962	PSPC1	100	92.000	ENSCHOG00000008913	PSPC1	67	92.000	Choloepus_hoffmanni
ENSHGLG00100007962	PSPC1	89	97.603	ENSCPBG00000020859	PSPC1	66	87.069	Chrysemys_picta_bellii
ENSHGLG00100007962	PSPC1	85	61.786	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSHGLG00100007962	PSPC1	69	100.000	ENSCANG00000018948	PSPC1	75	100.000	Colobus_angolensis_palliatus
ENSHGLG00100007962	PSPC1	100	91.977	ENSCGRG00001018368	Pspc1	67	91.977	Cricetulus_griseus_chok1gshd
ENSHGLG00100007962	PSPC1	100	91.977	ENSCGRG00000011724	Pspc1	67	91.977	Cricetulus_griseus_crigri
ENSHGLG00100007962	PSPC1	86	80.000	ENSCVAG00000007679	-	55	79.433	Cyprinodon_variegatus
ENSHGLG00100007962	PSPC1	99	72.046	ENSDARG00000006621	pspc1	58	83.478	Danio_rerio
ENSHGLG00100007962	PSPC1	100	92.000	ENSDNOG00000011078	PSPC1	67	92.000	Dasypus_novemcinctus
ENSHGLG00100007962	PSPC1	100	88.000	ENSDORG00000016050	Pspc1	66	88.000	Dipodomys_ordii
ENSHGLG00100007962	PSPC1	91	46.584	ENSEBUG00000010133	pspc1	75	49.653	Eptatretus_burgeri
ENSHGLG00100007962	PSPC1	87	76.140	ENSEBUG00000003964	-	52	75.433	Eptatretus_burgeri
ENSHGLG00100007962	PSPC1	100	92.775	ENSEASG00005000119	PSPC1	89	92.775	Equus_asinus_asinus
ENSHGLG00100007962	PSPC1	100	92.775	ENSECAG00000017286	PSPC1	89	92.775	Equus_caballus
ENSHGLG00100007962	PSPC1	91	83.333	ENSEEUG00000011288	-	61	83.333	Erinaceus_europaeus
ENSHGLG00100007962	PSPC1	89	84.138	ENSELUG00000003746	pspc1	70	83.562	Esox_lucius
ENSHGLG00100007962	PSPC1	100	93.103	ENSFCAG00000027841	PSPC1	89	93.103	Felis_catus
ENSHGLG00100007962	PSPC1	89	97.945	ENSFALG00000008750	PSPC1	62	90.549	Ficedula_albicollis
ENSHGLG00100007962	PSPC1	100	97.033	ENSFDAG00000002617	PSPC1	66	97.033	Fukomys_damarensis
ENSHGLG00100007962	PSPC1	88	82.986	ENSGMOG00000015074	pspc1	56	82.986	Gadus_morhua
ENSHGLG00100007962	PSPC1	88	98.606	ENSGALG00000017142	PSPC1	66	88.372	Gallus_gallus
ENSHGLG00100007962	PSPC1	93	75.244	ENSGAFG00000006327	pspc1	64	74.757	Gambusia_affinis
ENSHGLG00100007962	PSPC1	87	74.825	ENSGACG00000014901	pspc1	85	72.222	Gasterosteus_aculeatus
ENSHGLG00100007962	PSPC1	89	97.603	ENSGAGG00000019164	PSPC1	66	86.782	Gopherus_agassizii
ENSHGLG00100007962	PSPC1	100	92.286	ENSGGOG00000003414	PSPC1	89	92.286	Gorilla_gorilla
ENSHGLG00100007962	PSPC1	87	79.371	ENSHBUG00000001139	pspc1	56	78.819	Haplochromis_burtoni
ENSHGLG00100007962	PSPC1	100	94.236	ENSHGLG00000018811	PSPC1	67	94.236	Heterocephalus_glaber_female
ENSHGLG00100007962	PSPC1	95	70.645	ENSHCOG00000013251	pspc1	64	73.958	Hippocampus_comes
ENSHGLG00100007962	PSPC1	87	86.667	ENSIPUG00000013192	pspc1	55	85.764	Ictalurus_punctatus
ENSHGLG00100007962	PSPC1	100	92.571	ENSSTOG00000026833	PSPC1	89	92.571	Ictidomys_tridecemlineatus
ENSHGLG00100007962	PSPC1	100	92.837	ENSJJAG00000018334	Pspc1	67	92.837	Jaculus_jaculus
ENSHGLG00100007962	PSPC1	88	69.097	ENSKMAG00000013525	-	71	65.815	Kryptolebias_marmoratus
ENSHGLG00100007962	PSPC1	95	74.679	ENSLBEG00000004474	pspc1	66	74.204	Labrus_bergylta
ENSHGLG00100007962	PSPC1	98	76.657	ENSLACG00000010762	PSPC1	66	77.233	Latimeria_chalumnae
ENSHGLG00100007962	PSPC1	99	78.635	ENSLOCG00000010832	pspc1	66	78.466	Lepisosteus_oculatus
ENSHGLG00100007962	PSPC1	100	92.550	ENSLAFG00000010968	PSPC1	67	92.550	Loxodonta_africana
ENSHGLG00100007962	PSPC1	100	92.286	ENSMFAG00000032728	PSPC1	85	97.682	Macaca_fascicularis
ENSHGLG00100007962	PSPC1	100	92.286	ENSMMUG00000020262	PSPC1	82	97.682	Macaca_mulatta
ENSHGLG00100007962	PSPC1	100	92.286	ENSMNEG00000027401	PSPC1	75	92.286	Macaca_nemestrina
ENSHGLG00100007962	PSPC1	100	100.000	ENSMLEG00000039043	PSPC1	59	100.000	Mandrillus_leucophaeus
ENSHGLG00100007962	PSPC1	91	77.181	ENSMAMG00000004333	pspc1	57	76.490	Mastacembelus_armatus
ENSHGLG00100007962	PSPC1	80	76.806	ENSMZEG00005005726	pspc1	55	76.806	Maylandia_zebra
ENSHGLG00100007962	PSPC1	71	96.552	ENSMGAG00000015134	PSPC1	57	96.552	Meleagris_gallopavo
ENSHGLG00100007962	PSPC1	98	87.427	ENSMAUG00000021067	Pspc1	71	91.277	Mesocricetus_auratus
ENSHGLG00100007962	PSPC1	100	93.103	ENSMICG00000013970	PSPC1	89	93.103	Microcebus_murinus
ENSHGLG00100007962	PSPC1	100	92.264	ENSMOCG00000006060	Pspc1	67	92.264	Microtus_ochrogaster
ENSHGLG00100007962	PSPC1	100	92.286	ENSMODG00000008029	PSPC1	57	92.286	Monodelphis_domestica
ENSHGLG00100007962	PSPC1	87	78.322	ENSMALG00000008914	pspc1	61	74.038	Monopterus_albus
ENSHGLG00100007962	PSPC1	100	92.264	MGP_CAROLIEiJ_G0019341	Pspc1	84	91.837	Mus_caroli
ENSHGLG00100007962	PSPC1	100	92.264	ENSMUSG00000021938	Pspc1	83	91.837	Mus_musculus
ENSHGLG00100007962	PSPC1	100	92.264	MGP_PahariEiJ_G0030359	Pspc1	84	91.837	Mus_pahari
ENSHGLG00100007962	PSPC1	100	91.977	MGP_SPRETEiJ_G0020232	Pspc1	84	91.837	Mus_spretus
ENSHGLG00100007962	PSPC1	100	93.103	ENSMPUG00000013347	PSPC1	67	93.103	Mustela_putorius_furo
ENSHGLG00100007962	PSPC1	100	91.453	ENSMLUG00000017663	PSPC1	67	91.453	Myotis_lucifugus
ENSHGLG00100007962	PSPC1	100	92.264	ENSNGAG00000011271	Pspc1	67	92.264	Nannospalax_galili
ENSHGLG00100007962	PSPC1	80	77.567	ENSNBRG00000014059	pspc1	63	77.567	Neolamprologus_brichardi
ENSHGLG00100007962	PSPC1	100	92.286	ENSNLEG00000001294	PSPC1	67	92.286	Nomascus_leucogenys
ENSHGLG00100007962	PSPC1	98	90.029	ENSODEG00000019012	-	67	89.826	Octodon_degus
ENSHGLG00100007962	PSPC1	91	83.386	ENSODEG00000007817	-	60	83.386	Octodon_degus
ENSHGLG00100007962	PSPC1	87	79.720	ENSONIG00000012010	pspc1	56	79.167	Oreochromis_niloticus
ENSHGLG00100007962	PSPC1	69	100.000	ENSOANG00000009017	-	57	100.000	Ornithorhynchus_anatinus
ENSHGLG00100007962	PSPC1	99	72.222	ENSOANG00000011381	-	67	72.222	Ornithorhynchus_anatinus
ENSHGLG00100007962	PSPC1	100	92.571	ENSOCUG00000006153	PSPC1	67	92.571	Oryctolagus_cuniculus
ENSHGLG00100007962	PSPC1	87	81.469	ENSORLG00000004232	-	57	80.903	Oryzias_latipes
ENSHGLG00100007962	PSPC1	87	81.818	ENSORLG00020000578	PSPC1	62	76.923	Oryzias_latipes_hni
ENSHGLG00100007962	PSPC1	87	81.469	ENSORLG00015017480	pspc1	57	80.903	Oryzias_latipes_hsok
ENSHGLG00100007962	PSPC1	64	82.775	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSHGLG00100007962	PSPC1	100	92.571	ENSOGAG00000012643	PSPC1	67	92.571	Otolemur_garnettii
ENSHGLG00100007962	PSPC1	99	94.479	ENSOARG00000014163	PSPC1	64	94.479	Ovis_aries
ENSHGLG00100007962	PSPC1	89	99.658	ENSPPAG00000009836	PSPC1	82	99.658	Pan_paniscus
ENSHGLG00100007962	PSPC1	100	93.103	ENSPPRG00000008833	PSPC1	67	93.103	Panthera_pardus
ENSHGLG00100007962	PSPC1	100	79.205	ENSPTIG00000016917	PSPC1	64	79.205	Panthera_tigris_altaica
ENSHGLG00100007962	PSPC1	100	92.286	ENSPTRG00000005677	PSPC1	91	91.049	Pan_troglodytes
ENSHGLG00100007962	PSPC1	100	92.571	ENSPANG00000001992	PSPC1	83	98.013	Papio_anubis
ENSHGLG00100007962	PSPC1	89	85.172	ENSPKIG00000003578	pspc1	57	84.589	Paramormyrops_kingsleyae
ENSHGLG00100007962	PSPC1	98	86.377	ENSPSIG00000005168	PSPC1	66	86.667	Pelodiscus_sinensis
ENSHGLG00100007962	PSPC1	96	69.524	ENSPMGG00000015135	pspc1	86	69.524	Periophthalmus_magnuspinnatus
ENSHGLG00100007962	PSPC1	100	92.264	ENSPEMG00000015214	Pspc1	67	92.264	Peromyscus_maniculatus_bairdii
ENSHGLG00100007962	PSPC1	78	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSHGLG00100007962	PSPC1	99	92.550	ENSPCIG00000017680	PSPC1	67	92.550	Phascolarctos_cinereus
ENSHGLG00100007962	PSPC1	93	76.393	ENSPFOG00000003362	pspc1	60	75.896	Poecilia_formosa
ENSHGLG00100007962	PSPC1	93	76.393	ENSPLAG00000011540	pspc1	59	75.896	Poecilia_latipinna
ENSHGLG00100007962	PSPC1	93	75.738	ENSPMEG00000008322	pspc1	59	75.244	Poecilia_mexicana
ENSHGLG00100007962	PSPC1	93	75.410	ENSPREG00000007786	pspc1	59	74.919	Poecilia_reticulata
ENSHGLG00100007962	PSPC1	100	92.816	ENSPPYG00000005186	PSPC1	74	92.816	Pongo_abelii
ENSHGLG00100007962	PSPC1	100	92.571	ENSPCOG00000014364	PSPC1	70	92.571	Propithecus_coquereli
ENSHGLG00100007962	PSPC1	100	93.064	ENSPVAG00000005036	PSPC1	67	93.064	Pteropus_vampyrus
ENSHGLG00100007962	PSPC1	80	76.806	ENSPNYG00000008893	pspc1	55	76.806	Pundamilia_nyererei
ENSHGLG00100007962	PSPC1	99	74.128	ENSPNAG00000016511	pspc1	74	73.988	Pygocentrus_nattereri
ENSHGLG00100007962	PSPC1	100	92.550	ENSRNOG00000020782	Pspc1	75	92.550	Rattus_norvegicus
ENSHGLG00100007962	PSPC1	91	99.327	ENSRBIG00000036057	PSPC1	85	98.013	Rhinopithecus_bieti
ENSHGLG00100007962	PSPC1	100	92.571	ENSRROG00000036334	PSPC1	89	92.571	Rhinopithecus_roxellana
ENSHGLG00100007962	PSPC1	71	97.845	ENSSBOG00000028172	PSPC1	76	97.845	Saimiri_boliviensis_boliviensis
ENSHGLG00100007962	PSPC1	98	86.550	ENSSHAG00000004696	PSPC1	62	91.049	Sarcophilus_harrisii
ENSHGLG00100007962	PSPC1	88	86.458	ENSSFOG00015001395	pspc1	62	85.862	Scleropages_formosus
ENSHGLG00100007962	PSPC1	92	76.744	ENSSMAG00000001761	pspc1	71	78.746	Scophthalmus_maximus
ENSHGLG00100007962	PSPC1	87	81.818	ENSSDUG00000010651	pspc1	57	76.825	Seriola_dumerili
ENSHGLG00100007962	PSPC1	80	80.077	ENSSLDG00000004284	pspc1	59	75.347	Seriola_lalandi_dorsalis
ENSHGLG00100007962	PSPC1	91	91.195	ENSSARG00000000888	PSPC1	61	91.195	Sorex_araneus
ENSHGLG00100007962	PSPC1	91	84.112	ENSSPUG00000008550	PSPC1	64	84.858	Sphenodon_punctatus
ENSHGLG00100007962	PSPC1	92	77.741	ENSSPAG00000001921	pspc1	57	77.228	Stegastes_partitus
ENSHGLG00100007962	PSPC1	100	92.529	ENSSSCG00000009569	PSPC1	90	92.529	Sus_scrofa
ENSHGLG00100007962	PSPC1	90	97.952	ENSTGUG00000011295	PSPC1	63	97.952	Taeniopygia_guttata
ENSHGLG00100007962	PSPC1	95	68.489	ENSTRUG00000011335	pspc1	61	68.051	Takifugu_rubripes
ENSHGLG00100007962	PSPC1	89	72.260	ENSTNIG00000010358	pspc1	64	69.481	Tetraodon_nigroviridis
ENSHGLG00100007962	PSPC1	100	81.556	ENSTBEG00000002361	PSPC1	68	81.556	Tupaia_belangeri
ENSHGLG00100007962	PSPC1	100	93.064	ENSTTRG00000003343	PSPC1	67	93.064	Tursiops_truncatus
ENSHGLG00100007962	PSPC1	100	93.103	ENSUAMG00000012309	PSPC1	99	93.103	Ursus_americanus
ENSHGLG00100007962	PSPC1	91	98.990	ENSUMAG00000013993	PSPC1	83	98.990	Ursus_maritimus
ENSHGLG00100007962	PSPC1	69	100.000	ENSVPAG00000010029	PSPC1	57	100.000	Vicugna_pacos
ENSHGLG00100007962	PSPC1	100	93.103	ENSVVUG00000006414	PSPC1	91	93.103	Vulpes_vulpes
ENSHGLG00100007962	PSPC1	93	74.267	ENSXCOG00000017438	pspc1	73	73.786	Xiphophorus_couchianus
ENSHGLG00100007962	PSPC1	93	74.593	ENSXMAG00000007929	pspc1	73	74.110	Xiphophorus_maculatus