EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100009183 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 35814 bases
Position: chrJH170748.1:4880210-4916023
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100012399	TruB_N	PF01509.18	8.6e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100012542	TRUB1-201	711	-	ENSHGLP00100012399	237 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100009183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100009183's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100009183	TRUB1	100	85.306	ENSG00000165832	TRUB1	70	85.306	Homo_sapiens
ENSHGLG00100009183	TRUB1	77	65.934	ENSAPOG00000020565	trub1	67	65.574	Acanthochromis_polyacanthus
ENSHGLG00100009183	TRUB1	83	94.416	ENSAMEG00000014931	TRUB1	70	86.531	Ailuropoda_melanoleuca
ENSHGLG00100009183	TRUB1	77	59.016	ENSACIG00000003060	trub1	61	59.016	Amphilophus_citrinellus
ENSHGLG00100009183	TRUB1	77	65.385	ENSAOCG00000017188	trub1	71	62.887	Amphiprion_ocellaris
ENSHGLG00100009183	TRUB1	77	65.027	ENSAPEG00000015209	trub1	67	65.027	Amphiprion_percula
ENSHGLG00100009183	TRUB1	77	67.582	ENSATEG00000023291	trub1	65	67.582	Anabas_testudineus
ENSHGLG00100009183	TRUB1	78	75.000	ENSAPLG00000006808	TRUB1	67	74.332	Anas_platyrhynchos
ENSHGLG00100009183	TRUB1	78	67.742	ENSACAG00000009282	TRUB1	67	67.742	Anolis_carolinensis
ENSHGLG00100009183	TRUB1	95	87.013	ENSANAG00000022870	TRUB1	70	86.992	Aotus_nancymaae
ENSHGLG00100009183	TRUB1	77	65.027	ENSACLG00000000823	trub1	66	65.027	Astatotilapia_calliptera
ENSHGLG00100009183	TRUB1	77	66.120	ENSAMXG00000015845	trub1	61	66.120	Astyanax_mexicanus
ENSHGLG00100009183	TRUB1	97	86.076	ENSBTAG00000012955	TRUB1	70	85.020	Bos_taurus
ENSHGLG00100009183	TRUB1	100	84.553	ENSCJAG00000047815	TRUB1	70	86.585	Callithrix_jacchus
ENSHGLG00100009183	TRUB1	100	85.714	ENSCAFG00000011688	TRUB1	70	85.714	Canis_familiaris
ENSHGLG00100009183	TRUB1	100	85.714	ENSCAFG00020013237	TRUB1	70	85.714	Canis_lupus_dingo
ENSHGLG00100009183	TRUB1	93	89.140	ENSCHIG00000020884	TRUB1	70	84.553	Capra_hircus
ENSHGLG00100009183	TRUB1	100	82.520	ENSTSYG00000000446	TRUB1	70	82.927	Carlito_syrichta
ENSHGLG00100009183	TRUB1	63	95.973	ENSCAPG00000017088	TRUB1	63	95.973	Cavia_aperea
ENSHGLG00100009183	TRUB1	100	87.705	ENSCPOG00000040236	-	100	87.705	Cavia_porcellus
ENSHGLG00100009183	TRUB1	100	83.122	ENSCPOG00000030129	-	85	81.435	Cavia_porcellus
ENSHGLG00100009183	TRUB1	95	88.362	ENSCCAG00000028842	TRUB1	70	85.772	Cebus_capucinus
ENSHGLG00100009183	TRUB1	100	86.122	ENSCATG00000033431	TRUB1	70	86.122	Cercocebus_atys
ENSHGLG00100009183	TRUB1	100	88.115	ENSCLAG00000008664	TRUB1	100	89.344	Chinchilla_lanigera
ENSHGLG00100009183	TRUB1	100	86.122	ENSCSAG00000004891	TRUB1	70	86.122	Chlorocebus_sabaeus
ENSHGLG00100009183	TRUB1	100	76.735	ENSCHOG00000011931	TRUB1	72	77.551	Choloepus_hoffmanni
ENSHGLG00100009183	TRUB1	78	77.717	ENSCPBG00000003051	TRUB1	63	77.717	Chrysemys_picta_bellii
ENSHGLG00100009183	TRUB1	100	86.122	ENSCANG00000029445	TRUB1	70	86.122	Colobus_angolensis_palliatus
ENSHGLG00100009183	TRUB1	77	75.410	ENSCGRG00001016772	-	55	75.130	Cricetulus_griseus_chok1gshd
ENSHGLG00100009183	TRUB1	74	75.568	ENSCGRG00001010322	-	51	75.521	Cricetulus_griseus_chok1gshd
ENSHGLG00100009183	TRUB1	74	89.773	ENSCGRG00000010806	Trub1	59	88.083	Cricetulus_griseus_crigri
ENSHGLG00100009183	TRUB1	82	61.856	ENSCSEG00000011261	trub1	63	61.856	Cynoglossus_semilaevis
ENSHGLG00100009183	TRUB1	77	66.484	ENSCVAG00000008791	trub1	56	66.484	Cyprinodon_variegatus
ENSHGLG00100009183	TRUB1	77	66.667	ENSDARG00000053805	trub1	76	67.647	Danio_rerio
ENSHGLG00100009183	TRUB1	96	81.277	ENSDNOG00000001069	TRUB1	70	81.301	Dasypus_novemcinctus
ENSHGLG00100009183	TRUB1	100	85.477	ENSDORG00000010431	Trub1	56	94.359	Dipodomys_ordii
ENSHGLG00100009183	TRUB1	60	85.915	ENSETEG00000009183	TRUB1	57	68.137	Echinops_telfairi
ENSHGLG00100009183	TRUB1	95	88.362	ENSEASG00005014739	TRUB1	70	86.939	Equus_asinus_asinus
ENSHGLG00100009183	TRUB1	95	88.362	ENSECAG00000007177	TRUB1	70	86.939	Equus_caballus
ENSHGLG00100009183	TRUB1	80	78.307	ENSEEUG00000013993	TRUB1	54	77.436	Erinaceus_europaeus
ENSHGLG00100009183	TRUB1	77	68.852	ENSELUG00000000502	trub1	64	68.852	Esox_lucius
ENSHGLG00100009183	TRUB1	83	92.893	ENSFCAG00000031927	TRUB1	70	85.656	Felis_catus
ENSHGLG00100009183	TRUB1	65	75.817	ENSFALG00000002232	TRUB1	59	75.817	Ficedula_albicollis
ENSHGLG00100009183	TRUB1	100	90.164	ENSFDAG00000008140	TRUB1	100	90.164	Fukomys_damarensis
ENSHGLG00100009183	TRUB1	77	66.484	ENSFHEG00000004016	trub1	63	66.484	Fundulus_heteroclitus
ENSHGLG00100009183	TRUB1	78	73.370	ENSGALG00000009091	TRUB1	80	73.370	Gallus_gallus
ENSHGLG00100009183	TRUB1	77	64.130	ENSGAFG00000009193	trub1	65	64.130	Gambusia_affinis
ENSHGLG00100009183	TRUB1	56	66.667	ENSGACG00000015387	trub1	65	66.667	Gasterosteus_aculeatus
ENSHGLG00100009183	TRUB1	89	71.090	ENSGAGG00000009758	TRUB1	56	74.872	Gopherus_agassizii
ENSHGLG00100009183	TRUB1	100	85.714	ENSGGOG00000004583	TRUB1	70	85.714	Gorilla_gorilla
ENSHGLG00100009183	TRUB1	84	62.121	ENSHBUG00000016787	trub1	70	62.564	Haplochromis_burtoni
ENSHGLG00100009183	TRUB1	100	96.721	ENSHGLG00000015314	TRUB1	70	96.721	Heterocephalus_glaber_female
ENSHGLG00100009183	TRUB1	82	62.564	ENSHCOG00000017877	trub1	71	62.564	Hippocampus_comes
ENSHGLG00100009183	TRUB1	77	68.852	ENSIPUG00000017559	trub1	64	68.852	Ictalurus_punctatus
ENSHGLG00100009183	TRUB1	83	94.924	ENSSTOG00000003641	TRUB1	69	86.555	Ictidomys_tridecemlineatus
ENSHGLG00100009183	TRUB1	82	92.308	ENSJJAG00000011800	Trub1	57	92.308	Jaculus_jaculus
ENSHGLG00100009183	TRUB1	77	66.120	ENSKMAG00000006232	trub1	66	66.120	Kryptolebias_marmoratus
ENSHGLG00100009183	TRUB1	77	66.667	ENSLBEG00000026722	trub1	64	66.667	Labrus_bergylta
ENSHGLG00100009183	TRUB1	80	74.737	ENSLACG00000014885	TRUB1	63	74.737	Latimeria_chalumnae
ENSHGLG00100009183	TRUB1	82	68.718	ENSLOCG00000012979	trub1	66	68.718	Lepisosteus_oculatus
ENSHGLG00100009183	TRUB1	100	79.916	ENSLAFG00000015452	TRUB1	68	79.916	Loxodonta_africana
ENSHGLG00100009183	TRUB1	100	86.122	ENSMFAG00000031767	TRUB1	70	86.122	Macaca_fascicularis
ENSHGLG00100009183	TRUB1	100	86.122	ENSMMUG00000001902	TRUB1	70	86.122	Macaca_mulatta
ENSHGLG00100009183	TRUB1	100	80.408	ENSMNEG00000044646	TRUB1	69	80.408	Macaca_nemestrina
ENSHGLG00100009183	TRUB1	100	86.122	ENSMLEG00000042655	TRUB1	70	85.714	Mandrillus_leucophaeus
ENSHGLG00100009183	TRUB1	77	65.027	ENSMZEG00005024095	trub1	66	65.027	Maylandia_zebra
ENSHGLG00100009183	TRUB1	78	73.370	ENSMGAG00000011135	TRUB1	63	73.370	Meleagris_gallopavo
ENSHGLG00100009183	TRUB1	74	86.364	ENSMAUG00000011101	Trub1	57	85.641	Mesocricetus_auratus
ENSHGLG00100009183	TRUB1	100	86.475	ENSMICG00000016324	TRUB1	70	86.475	Microcebus_murinus
ENSHGLG00100009183	TRUB1	100	79.747	ENSMOCG00000017759	Trub1	59	88.660	Microtus_ochrogaster
ENSHGLG00100009183	TRUB1	77	87.363	ENSMODG00000009676	TRUB1	52	85.185	Monodelphis_domestica
ENSHGLG00100009183	TRUB1	100	81.435	MGP_CAROLIEiJ_G0023100	Trub1	94	81.435	Mus_caroli
ENSHGLG00100009183	TRUB1	100	80.169	ENSMUSG00000025086	Trub1	94	80.169	Mus_musculus
ENSHGLG00100009183	TRUB1	100	81.857	MGP_PahariEiJ_G0014588	Trub1	69	81.857	Mus_pahari
ENSHGLG00100009183	TRUB1	100	80.169	MGP_SPRETEiJ_G0024021	Trub1	94	80.169	Mus_spretus
ENSHGLG00100009183	TRUB1	83	95.431	ENSMPUG00000003556	TRUB1	70	87.347	Mustela_putorius_furo
ENSHGLG00100009183	TRUB1	94	88.789	ENSMLUG00000017686	TRUB1	69	84.519	Myotis_lucifugus
ENSHGLG00100009183	TRUB1	100	84.426	ENSNGAG00000018682	Trub1	70	84.426	Nannospalax_galili
ENSHGLG00100009183	TRUB1	77	65.027	ENSNBRG00000023393	trub1	65	65.027	Neolamprologus_brichardi
ENSHGLG00100009183	TRUB1	95	86.638	ENSNLEG00000016345	TRUB1	70	84.898	Nomascus_leucogenys
ENSHGLG00100009183	TRUB1	77	87.363	ENSMEUG00000006603	TRUB1	70	84.737	Notamacropus_eugenii
ENSHGLG00100009183	TRUB1	83	86.294	ENSOPRG00000009371	TRUB1	57	86.154	Ochotona_princeps
ENSHGLG00100009183	TRUB1	100	81.148	ENSODEG00000010854	TRUB1	70	83.607	Octodon_degus
ENSHGLG00100009183	TRUB1	77	64.481	ENSONIG00000007249	trub1	67	64.481	Oreochromis_niloticus
ENSHGLG00100009183	TRUB1	78	80.645	ENSOANG00000001556	TRUB1	61	80.645	Ornithorhynchus_anatinus
ENSHGLG00100009183	TRUB1	83	89.340	ENSOCUG00000009456	TRUB1	56	89.231	Oryctolagus_cuniculus
ENSHGLG00100009183	TRUB1	77	67.582	ENSORLG00000029719	trub1	65	67.582	Oryzias_latipes
ENSHGLG00100009183	TRUB1	77	67.033	ENSORLG00020016767	trub1	64	67.033	Oryzias_latipes_hni
ENSHGLG00100009183	TRUB1	77	67.033	ENSORLG00015014728	trub1	65	67.033	Oryzias_latipes_hsok
ENSHGLG00100009183	TRUB1	77	68.681	ENSOMEG00000014556	trub1	64	68.681	Oryzias_melastigma
ENSHGLG00100009183	TRUB1	100	86.939	ENSOGAG00000015895	TRUB1	70	86.939	Otolemur_garnettii
ENSHGLG00100009183	TRUB1	81	90.816	ENSOARG00000015591	TRUB1	70	82.449	Ovis_aries
ENSHGLG00100009183	TRUB1	100	85.714	ENSPPAG00000043645	TRUB1	70	85.714	Pan_paniscus
ENSHGLG00100009183	TRUB1	83	91.878	ENSPPRG00000007096	TRUB1	70	84.426	Panthera_pardus
ENSHGLG00100009183	TRUB1	83	92.386	ENSPTIG00000006378	TRUB1	70	84.836	Panthera_tigris_altaica
ENSHGLG00100009183	TRUB1	100	85.714	ENSPTRG00000002964	TRUB1	70	85.714	Pan_troglodytes
ENSHGLG00100009183	TRUB1	100	85.714	ENSPANG00000020712	TRUB1	70	85.714	Papio_anubis
ENSHGLG00100009183	TRUB1	78	76.087	ENSPSIG00000012877	TRUB1	63	76.087	Pelodiscus_sinensis
ENSHGLG00100009183	TRUB1	77	63.934	ENSPMGG00000000075	trub1	66	63.934	Periophthalmus_magnuspinnatus
ENSHGLG00100009183	TRUB1	83	86.224	ENSPEMG00000011156	Trub1	57	86.598	Peromyscus_maniculatus_bairdii
ENSHGLG00100009183	TRUB1	77	87.363	ENSPCIG00000009729	TRUB1	54	85.638	Phascolarctos_cinereus
ENSHGLG00100009183	TRUB1	77	65.574	ENSPFOG00000009950	trub1	67	65.574	Poecilia_formosa
ENSHGLG00100009183	TRUB1	77	65.574	ENSPLAG00000013855	trub1	64	65.574	Poecilia_latipinna
ENSHGLG00100009183	TRUB1	77	65.574	ENSPMEG00000009064	trub1	66	65.574	Poecilia_mexicana
ENSHGLG00100009183	TRUB1	77	66.120	ENSPREG00000003343	trub1	66	66.120	Poecilia_reticulata
ENSHGLG00100009183	TRUB1	95	87.500	ENSPPYG00000002676	TRUB1	70	86.122	Pongo_abelii
ENSHGLG00100009183	TRUB1	100	77.016	ENSPCAG00000008427	TRUB1	70	77.016	Procavia_capensis
ENSHGLG00100009183	TRUB1	100	79.098	ENSPCOG00000024360	TRUB1	68	79.098	Propithecus_coquereli
ENSHGLG00100009183	TRUB1	100	85.656	ENSPVAG00000007575	TRUB1	93	85.656	Pteropus_vampyrus
ENSHGLG00100009183	TRUB1	77	65.027	ENSPNYG00000018614	trub1	66	65.027	Pundamilia_nyererei
ENSHGLG00100009183	TRUB1	77	56.044	ENSPNAG00000006881	trub1	55	56.044	Pygocentrus_nattereri
ENSHGLG00100009183	TRUB1	100	80.591	ENSRNOG00000017321	Trub1	69	80.591	Rattus_norvegicus
ENSHGLG00100009183	TRUB1	97	75.105	ENSRBIG00000033423	TRUB1	67	75.105	Rhinopithecus_bieti
ENSHGLG00100009183	TRUB1	100	85.714	ENSRROG00000033902	TRUB1	70	85.714	Rhinopithecus_roxellana
ENSHGLG00100009183	TRUB1	95	88.793	ENSSBOG00000024237	TRUB1	70	85.772	Saimiri_boliviensis_boliviensis
ENSHGLG00100009183	TRUB1	63	86.667	ENSSHAG00000009346	TRUB1	50	86.667	Sarcophilus_harrisii
ENSHGLG00100009183	TRUB1	77	66.120	ENSSFOG00015022124	trub1	62	66.120	Scleropages_formosus
ENSHGLG00100009183	TRUB1	77	66.667	ENSSMAG00000001020	trub1	65	66.667	Scophthalmus_maximus
ENSHGLG00100009183	TRUB1	75	67.232	ENSSDUG00000016414	trub1	66	67.213	Seriola_dumerili
ENSHGLG00100009183	TRUB1	75	67.797	ENSSLDG00000015486	trub1	66	67.760	Seriola_lalandi_dorsalis
ENSHGLG00100009183	TRUB1	81	76.440	ENSSPUG00000001642	TRUB1	66	76.440	Sphenodon_punctatus
ENSHGLG00100009183	TRUB1	77	66.120	ENSSPAG00000001217	trub1	66	66.120	Stegastes_partitus
ENSHGLG00100009183	TRUB1	100	82.449	ENSSSCG00000010653	TRUB1	71	82.449	Sus_scrofa
ENSHGLG00100009183	TRUB1	77	74.176	ENSTGUG00000010971	TRUB1	65	73.913	Taeniopygia_guttata
ENSHGLG00100009183	TRUB1	83	93.909	ENSTTRG00000005767	TRUB1	93	84.362	Tursiops_truncatus
ENSHGLG00100009183	TRUB1	83	95.431	ENSUAMG00000024876	TRUB1	70	86.939	Ursus_americanus
ENSHGLG00100009183	TRUB1	81	95.812	ENSUMAG00000002411	TRUB1	91	84.874	Ursus_maritimus
ENSHGLG00100009183	TRUB1	100	85.714	ENSVPAG00000005507	TRUB1	70	85.714	Vicugna_pacos
ENSHGLG00100009183	TRUB1	100	85.124	ENSVVUG00000010085	TRUB1	58	85.124	Vulpes_vulpes
ENSHGLG00100009183	TRUB1	78	68.478	ENSXETG00000023828	trub1	66	68.478	Xenopus_tropicalis
ENSHGLG00100009183	TRUB1	77	65.027	ENSXCOG00000017847	trub1	65	65.027	Xiphophorus_couchianus
ENSHGLG00100009183	TRUB1	77	65.574	ENSXMAG00000014701	trub1	66	65.574	Xiphophorus_maculatus