EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100009750 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 13289 bases
Position: chrJH173457.1:1416354-1429642
Accession: 101720593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100013168	CPSF_A	PF03178.15	1.7e-92	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100013319	CPSF1-201	4323	XM_004837720	ENSHGLP00100013168	1440 (aa)	XP_004837777	UPI00034F5EE6

Gene Model

Click here to download ENSHGLG00100009750's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100009750's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100009750	CPSF1	100	96.466	ENSG00000071894	CPSF1	100	96.466	Homo_sapiens
ENSHGLG00100009750	CPSF1	100	78.093	ENSAPOG00000019621	cpsf1	100	78.229	Acanthochromis_polyacanthus
ENSHGLG00100009750	CPSF1	97	95.125	ENSAMEG00000005557	CPSF1	99	95.125	Ailuropoda_melanoleuca
ENSHGLG00100009750	CPSF1	100	78.601	ENSACIG00000006112	cpsf1	100	78.947	Amphilophus_citrinellus
ENSHGLG00100009750	CPSF1	100	79.408	ENSAOCG00000007120	cpsf1	100	79.614	Amphiprion_ocellaris
ENSHGLG00100009750	CPSF1	100	79.876	ENSAPEG00000005755	cpsf1	100	80.014	Amphiprion_percula
ENSHGLG00100009750	CPSF1	100	78.070	ENSATEG00000011097	cpsf1	100	78.408	Anabas_testudineus
ENSHGLG00100009750	CPSF1	93	81.534	ENSACAG00000009655	CPSF1	100	81.534	Anolis_carolinensis
ENSHGLG00100009750	CPSF1	100	96.463	ENSANAG00000036514	CPSF1	100	96.463	Aotus_nancymaae
ENSHGLG00100009750	CPSF1	100	77.632	ENSACLG00000012231	cpsf1	99	79.085	Astatotilapia_calliptera
ENSHGLG00100009750	CPSF1	100	73.790	ENSAMXG00000008485	cpsf1	100	73.859	Astyanax_mexicanus
ENSHGLG00100009750	CPSF1	100	94.690	ENSBTAG00000008355	CPSF1	100	95.173	Bos_taurus
ENSHGLG00100009750	CPSF1	100	32.281	WBGene00022301	cpsf-1	100	40.000	Caenorhabditis_elegans
ENSHGLG00100009750	CPSF1	100	96.394	ENSCJAG00000021421	CPSF1	100	96.394	Callithrix_jacchus
ENSHGLG00100009750	CPSF1	96	96.698	ENSCAFG00000001600	CPSF1	100	96.748	Canis_familiaris
ENSHGLG00100009750	CPSF1	100	96.537	ENSCAFG00020020821	CPSF1	100	96.537	Canis_lupus_dingo
ENSHGLG00100009750	CPSF1	100	91.117	ENSCHIG00000015833	CPSF1	100	91.117	Capra_hircus
ENSHGLG00100009750	CPSF1	100	97.226	ENSTSYG00000028560	CPSF1	100	97.226	Carlito_syrichta
ENSHGLG00100009750	CPSF1	97	97.776	ENSCAPG00000014921	CPSF1	99	97.776	Cavia_aperea
ENSHGLG00100009750	CPSF1	100	97.365	ENSCPOG00000011448	CPSF1	100	97.365	Cavia_porcellus
ENSHGLG00100009750	CPSF1	100	96.602	ENSCCAG00000037658	CPSF1	100	96.602	Cebus_capucinus
ENSHGLG00100009750	CPSF1	100	96.325	ENSCATG00000037234	CPSF1	100	96.325	Cercocebus_atys
ENSHGLG00100009750	CPSF1	100	99.306	ENSCLAG00000012166	CPSF1	100	99.306	Chinchilla_lanigera
ENSHGLG00100009750	CPSF1	100	96.463	ENSCSAG00000008502	CPSF1	100	96.463	Chlorocebus_sabaeus
ENSHGLG00100009750	CPSF1	99	87.535	ENSCPBG00000018910	CPSF1	96	87.535	Chrysemys_picta_bellii
ENSHGLG00100009750	CPSF1	96	48.816	ENSCING00000000514	-	100	48.744	Ciona_intestinalis
ENSHGLG00100009750	CPSF1	99	48.522	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSHGLG00100009750	CPSF1	99	90.693	ENSCANG00000032760	CPSF1	99	90.693	Colobus_angolensis_palliatus
ENSHGLG00100009750	CPSF1	100	97.224	ENSCGRG00001016344	Cpsf1	100	97.224	Cricetulus_griseus_chok1gshd
ENSHGLG00100009750	CPSF1	100	95.142	ENSCGRG00000003118	Cpsf1	100	95.142	Cricetulus_griseus_crigri
ENSHGLG00100009750	CPSF1	100	77.770	ENSCSEG00000013464	cpsf1	100	77.978	Cynoglossus_semilaevis
ENSHGLG00100009750	CPSF1	85	76.781	ENSCVAG00000014059	cpsf1	100	75.463	Cyprinodon_variegatus
ENSHGLG00100009750	CPSF1	100	79.904	ENSDARG00000034178	cpsf1	100	79.972	Danio_rerio
ENSHGLG00100009750	CPSF1	68	96.232	ENSDNOG00000043654	CPSF1	94	96.232	Dasypus_novemcinctus
ENSHGLG00100009750	CPSF1	97	96.839	ENSDORG00000006278	Cpsf1	99	96.839	Dipodomys_ordii
ENSHGLG00100009750	CPSF1	100	45.094	FBgn0024698	Cpsf160	100	45.101	Drosophila_melanogaster
ENSHGLG00100009750	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSHGLG00100009750	CPSF1	100	97.022	ENSEASG00005010774	CPSF1	100	97.022	Equus_asinus_asinus
ENSHGLG00100009750	CPSF1	100	97.091	ENSECAG00000022209	CPSF1	100	97.091	Equus_caballus
ENSHGLG00100009750	CPSF1	100	94.879	ENSEEUG00000000471	CPSF1	100	94.879	Erinaceus_europaeus
ENSHGLG00100009750	CPSF1	100	78.204	ENSELUG00000012271	cpsf1	100	78.753	Esox_lucius
ENSHGLG00100009750	CPSF1	100	99.306	ENSFDAG00000016060	CPSF1	100	99.306	Fukomys_damarensis
ENSHGLG00100009750	CPSF1	100	76.912	ENSFHEG00000016801	cpsf1	100	76.981	Fundulus_heteroclitus
ENSHGLG00100009750	CPSF1	100	78.153	ENSGMOG00000000796	cpsf1	100	78.360	Gadus_morhua
ENSHGLG00100009750	CPSF1	94	83.929	ENSGAFG00000018890	cpsf1	99	83.929	Gambusia_affinis
ENSHGLG00100009750	CPSF1	100	78.813	ENSGACG00000008703	cpsf1	100	78.802	Gasterosteus_aculeatus
ENSHGLG00100009750	CPSF1	100	83.875	ENSGAGG00000004276	CPSF1	98	87.490	Gopherus_agassizii
ENSHGLG00100009750	CPSF1	100	96.391	ENSGGOG00000016185	CPSF1	100	96.391	Gorilla_gorilla
ENSHGLG00100009750	CPSF1	100	79.917	ENSHBUG00000018900	cpsf1	100	80.055	Haplochromis_burtoni
ENSHGLG00100009750	CPSF1	100	99.931	ENSHGLG00000016139	CPSF1	100	99.931	Heterocephalus_glaber_female
ENSHGLG00100009750	CPSF1	100	77.205	ENSHCOG00000018509	cpsf1	100	77.325	Hippocampus_comes
ENSHGLG00100009750	CPSF1	100	76.374	ENSIPUG00000011259	cpsf1	100	76.374	Ictalurus_punctatus
ENSHGLG00100009750	CPSF1	97	96.783	ENSSTOG00000009957	CPSF1	99	96.783	Ictidomys_tridecemlineatus
ENSHGLG00100009750	CPSF1	100	97.085	ENSJJAG00000023002	Cpsf1	100	97.085	Jaculus_jaculus
ENSHGLG00100009750	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	99	85.580	Kryptolebias_marmoratus
ENSHGLG00100009750	CPSF1	100	77.232	ENSLBEG00000003601	cpsf1	100	77.642	Labrus_bergylta
ENSHGLG00100009750	CPSF1	88	81.611	ENSLACG00000000233	CPSF1	92	81.611	Latimeria_chalumnae
ENSHGLG00100009750	CPSF1	100	78.039	ENSLOCG00000008484	cpsf1	100	78.384	Lepisosteus_oculatus
ENSHGLG00100009750	CPSF1	97	95.132	ENSLAFG00000022601	CPSF1	100	95.132	Loxodonta_africana
ENSHGLG00100009750	CPSF1	100	96.325	ENSMFAG00000037013	CPSF1	100	96.325	Macaca_fascicularis
ENSHGLG00100009750	CPSF1	100	96.394	ENSMMUG00000007380	CPSF1	100	96.394	Macaca_mulatta
ENSHGLG00100009750	CPSF1	97	96.341	ENSMNEG00000043564	CPSF1	100	96.341	Macaca_nemestrina
ENSHGLG00100009750	CPSF1	100	96.325	ENSMLEG00000043010	CPSF1	100	96.325	Mandrillus_leucophaeus
ENSHGLG00100009750	CPSF1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.702	Mastacembelus_armatus
ENSHGLG00100009750	CPSF1	100	77.770	ENSMZEG00005001168	cpsf1	100	77.909	Maylandia_zebra
ENSHGLG00100009750	CPSF1	100	97.224	ENSMAUG00000003601	Cpsf1	100	97.224	Mesocricetus_auratus
ENSHGLG00100009750	CPSF1	100	96.877	ENSMICG00000015767	CPSF1	100	96.877	Microcebus_murinus
ENSHGLG00100009750	CPSF1	100	97.294	ENSMOCG00000022758	Cpsf1	100	97.294	Microtus_ochrogaster
ENSHGLG00100009750	CPSF1	100	79.170	ENSMMOG00000021245	cpsf1	100	79.308	Mola_mola
ENSHGLG00100009750	CPSF1	100	93.099	ENSMODG00000010755	CPSF1	100	93.099	Monodelphis_domestica
ENSHGLG00100009750	CPSF1	100	77.996	ENSMALG00000020545	cpsf1	100	78.131	Monopterus_albus
ENSHGLG00100009750	CPSF1	100	97.710	MGP_CAROLIEiJ_G0019936	Cpsf1	100	97.710	Mus_caroli
ENSHGLG00100009750	CPSF1	100	97.571	ENSMUSG00000034022	Cpsf1	100	97.571	Mus_musculus
ENSHGLG00100009750	CPSF1	100	97.641	MGP_PahariEiJ_G0019946	Cpsf1	100	97.641	Mus_pahari
ENSHGLG00100009750	CPSF1	100	97.641	MGP_SPRETEiJ_G0020839	Cpsf1	100	97.641	Mus_spretus
ENSHGLG00100009750	CPSF1	94	95.997	ENSMPUG00000006419	CPSF1	93	95.997	Mustela_putorius_furo
ENSHGLG00100009750	CPSF1	100	96.877	ENSNGAG00000022460	Cpsf1	100	96.877	Nannospalax_galili
ENSHGLG00100009750	CPSF1	100	74.879	ENSNBRG00000000813	cpsf1	100	74.879	Neolamprologus_brichardi
ENSHGLG00100009750	CPSF1	86	84.729	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSHGLG00100009750	CPSF1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSHGLG00100009750	CPSF1	61	96.429	ENSOPRG00000004693	-	71	96.429	Ochotona_princeps
ENSHGLG00100009750	CPSF1	100	99.375	ENSODEG00000013995	CPSF1	100	99.375	Octodon_degus
ENSHGLG00100009750	CPSF1	100	79.917	ENSONIG00000007676	cpsf1	100	80.402	Oreochromis_niloticus
ENSHGLG00100009750	CPSF1	58	92.143	ENSOANG00000010716	CPSF1	88	92.143	Ornithorhynchus_anatinus
ENSHGLG00100009750	CPSF1	100	77.415	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSHGLG00100009750	CPSF1	100	77.551	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSHGLG00100009750	CPSF1	100	77.483	ENSORLG00015009979	cpsf1	100	77.551	Oryzias_latipes_hsok
ENSHGLG00100009750	CPSF1	100	77.452	ENSOMEG00000011849	cpsf1	100	77.725	Oryzias_melastigma
ENSHGLG00100009750	CPSF1	100	96.949	ENSOGAG00000000315	CPSF1	100	96.949	Otolemur_garnettii
ENSHGLG00100009750	CPSF1	100	96.463	ENSPPAG00000019280	CPSF1	100	96.463	Pan_paniscus
ENSHGLG00100009750	CPSF1	100	94.819	ENSPTRG00000051253	-	100	94.819	Pan_troglodytes
ENSHGLG00100009750	CPSF1	100	96.463	ENSPTRG00000049288	-	100	96.463	Pan_troglodytes
ENSHGLG00100009750	CPSF1	97	96.198	ENSPANG00000015005	CPSF1	100	96.198	Papio_anubis
ENSHGLG00100009750	CPSF1	100	80.969	ENSPKIG00000002582	cpsf1	100	81.335	Paramormyrops_kingsleyae
ENSHGLG00100009750	CPSF1	100	93.030	ENSPCIG00000009035	CPSF1	100	93.030	Phascolarctos_cinereus
ENSHGLG00100009750	CPSF1	100	76.777	ENSPFOG00000012870	cpsf1	100	76.777	Poecilia_formosa
ENSHGLG00100009750	CPSF1	100	76.522	ENSPREG00000016307	cpsf1	100	76.522	Poecilia_reticulata
ENSHGLG00100009750	CPSF1	100	88.419	ENSPPYG00000018973	CPSF1	100	88.419	Pongo_abelii
ENSHGLG00100009750	CPSF1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSHGLG00100009750	CPSF1	100	93.135	ENSPCOG00000020001	CPSF1	100	93.135	Propithecus_coquereli
ENSHGLG00100009750	CPSF1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSHGLG00100009750	CPSF1	100	78.879	ENSPNYG00000004906	cpsf1	100	79.016	Pundamilia_nyererei
ENSHGLG00100009750	CPSF1	100	75.052	ENSPNAG00000024395	cpsf1	100	75.052	Pygocentrus_nattereri
ENSHGLG00100009750	CPSF1	100	97.571	ENSRNOG00000030705	Cpsf1	100	97.571	Rattus_norvegicus
ENSHGLG00100009750	CPSF1	100	96.325	ENSRBIG00000044907	CPSF1	100	96.325	Rhinopithecus_bieti
ENSHGLG00100009750	CPSF1	100	96.255	ENSRROG00000044861	CPSF1	100	96.255	Rhinopithecus_roxellana
ENSHGLG00100009750	CPSF1	97	96.341	ENSSBOG00000027177	CPSF1	100	96.341	Saimiri_boliviensis_boliviensis
ENSHGLG00100009750	CPSF1	100	92.961	ENSSHAG00000006500	CPSF1	100	92.961	Sarcophilus_harrisii
ENSHGLG00100009750	CPSF1	100	78.015	ENSSFOG00015004606	cpsf1	100	81.295	Scleropages_formosus
ENSHGLG00100009750	CPSF1	100	78.267	ENSSMAG00000020547	cpsf1	100	78.334	Scophthalmus_maximus
ENSHGLG00100009750	CPSF1	100	79.391	ENSSDUG00000001100	cpsf1	100	79.737	Seriola_dumerili
ENSHGLG00100009750	CPSF1	100	79.516	ENSSLDG00000003619	cpsf1	100	79.654	Seriola_lalandi_dorsalis
ENSHGLG00100009750	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSHGLG00100009750	CPSF1	96	87.455	ENSSPUG00000014396	CPSF1	100	87.455	Sphenodon_punctatus
ENSHGLG00100009750	CPSF1	100	78.214	ENSSPAG00000005349	cpsf1	100	78.349	Stegastes_partitus
ENSHGLG00100009750	CPSF1	100	95.568	ENSSSCG00000005906	CPSF1	100	95.568	Sus_scrofa
ENSHGLG00100009750	CPSF1	96	77.941	ENSTRUG00000013134	cpsf1	99	78.081	Takifugu_rubripes
ENSHGLG00100009750	CPSF1	100	78.694	ENSTNIG00000014027	cpsf1	100	78.763	Tetraodon_nigroviridis
ENSHGLG00100009750	CPSF1	74	97.345	ENSTBEG00000001756	CPSF1	87	97.345	Tupaia_belangeri
ENSHGLG00100009750	CPSF1	90	97.064	ENSTTRG00000001937	CPSF1	90	97.064	Tursiops_truncatus
ENSHGLG00100009750	CPSF1	97	96.844	ENSUAMG00000006476	CPSF1	98	96.844	Ursus_americanus
ENSHGLG00100009750	CPSF1	100	77.647	ENSXCOG00000003608	cpsf1	100	77.924	Xiphophorus_couchianus
ENSHGLG00100009750	CPSF1	100	77.163	ENSXMAG00000005798	cpsf1	100	77.370	Xiphophorus_maculatus