EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100010036 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 100611 bases
Position: chrJH168671.1:186223-286833
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100013574	Upf2	PF04050.14	4.6e-33	1	1
ENSHGLP00100013574	MIF4G	PF02854.19	7.3e-75	1	3
ENSHGLP00100013574	MIF4G	PF02854.19	7.3e-75	2	3
ENSHGLP00100013574	MIF4G	PF02854.19	7.3e-75	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100013729	UPF2-201	3744	-	ENSHGLP00100013574	1247 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100010036's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100010036's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100010036	UPF2	100	93.622	ENSG00000151461	UPF2	99	92.913	Homo_sapiens
ENSHGLG00100010036	UPF2	100	73.705	ENSAPOG00000015837	UPF2	100	74.745	Acanthochromis_polyacanthus
ENSHGLG00100010036	UPF2	89	98.473	ENSAMEG00000004586	UPF2	99	94.720	Ailuropoda_melanoleuca
ENSHGLG00100010036	UPF2	100	79.359	ENSACIG00000018078	UPF2	100	79.359	Amphilophus_citrinellus
ENSHGLG00100010036	UPF2	100	77.778	ENSAOCG00000016766	UPF2	99	79.359	Amphiprion_ocellaris
ENSHGLG00100010036	UPF2	100	77.856	ENSAPEG00000019084	UPF2	99	79.437	Amphiprion_percula
ENSHGLG00100010036	UPF2	100	77.691	ENSATEG00000021677	UPF2	99	79.313	Anabas_testudineus
ENSHGLG00100010036	UPF2	100	84.066	ENSAPLG00000010287	UPF2	87	90.647	Anas_platyrhynchos
ENSHGLG00100010036	UPF2	94	90.488	ENSACAG00000009259	UPF2	88	93.801	Anolis_carolinensis
ENSHGLG00100010036	UPF2	100	82.151	ENSANAG00000028451	UPF2	89	90.673	Aotus_nancymaae
ENSHGLG00100010036	UPF2	100	78.013	ENSACLG00000012696	UPF2	99	79.203	Astatotilapia_calliptera
ENSHGLG00100010036	UPF2	100	77.392	ENSAMXG00000013700	UPF2	99	79.483	Astyanax_mexicanus
ENSHGLG00100010036	UPF2	100	94.090	ENSBTAG00000000288	UPF2	99	94.405	Bos_taurus
ENSHGLG00100010036	UPF2	100	93.696	ENSCJAG00000020685	UPF2	99	94.169	Callithrix_jacchus
ENSHGLG00100010036	UPF2	89	98.383	ENSCAFG00000004839	UPF2	99	94.641	Canis_familiaris
ENSHGLG00100010036	UPF2	89	95.863	ENSCAFG00020005882	UPF2	100	91.719	Canis_lupus_dingo
ENSHGLG00100010036	UPF2	100	94.169	ENSCHIG00000020359	UPF2	99	94.484	Capra_hircus
ENSHGLG00100010036	UPF2	100	93.459	ENSTSYG00000000935	UPF2	97	100.000	Carlito_syrichta
ENSHGLG00100010036	UPF2	91	84.079	ENSCAPG00000016658	UPF2	95	84.220	Cavia_aperea
ENSHGLG00100010036	UPF2	99	93.418	ENSCPOG00000008809	UPF2	100	91.253	Cavia_porcellus
ENSHGLG00100010036	UPF2	100	88.968	ENSCCAG00000035991	UPF2	99	88.889	Cebus_capucinus
ENSHGLG00100010036	UPF2	100	90.754	ENSCATG00000032679	UPF2	99	93.071	Cercocebus_atys
ENSHGLG00100010036	UPF2	100	96.057	ENSCLAG00000011434	UPF2	99	96.057	Chinchilla_lanigera
ENSHGLG00100010036	UPF2	100	90.754	ENSCSAG00000013372	UPF2	99	93.071	Chlorocebus_sabaeus
ENSHGLG00100010036	UPF2	87	99.107	ENSCHOG00000000422	UPF2	89	99.107	Choloepus_hoffmanni
ENSHGLG00100010036	UPF2	100	88.268	ENSCPBG00000027823	UPF2	89	94.699	Chrysemys_picta_bellii
ENSHGLG00100010036	UPF2	80	48.871	ENSCSAVG00000007772	-	79	49.873	Ciona_savignyi
ENSHGLG00100010036	UPF2	100	85.108	ENSCANG00000040396	UPF2	100	87.717	Colobus_angolensis_palliatus
ENSHGLG00100010036	UPF2	89	97.482	ENSCGRG00001019347	Upf2	99	94.322	Cricetulus_griseus_chok1gshd
ENSHGLG00100010036	UPF2	89	97.482	ENSCGRG00000017993	Upf2	99	94.322	Cricetulus_griseus_crigri
ENSHGLG00100010036	UPF2	89	80.394	ENSCSEG00000003520	UPF2	68	82.924	Cynoglossus_semilaevis
ENSHGLG00100010036	UPF2	99	76.283	ENSCVAG00000006167	UPF2	93	84.686	Cyprinodon_variegatus
ENSHGLG00100010036	UPF2	100	93.538	ENSDNOG00000018160	UPF2	99	94.405	Dasypus_novemcinctus
ENSHGLG00100010036	UPF2	100	94.795	ENSDORG00000002478	Upf2	99	94.795	Dipodomys_ordii
ENSHGLG00100010036	UPF2	89	35.949	FBgn0029992	Upf2	79	43.860	Drosophila_melanogaster
ENSHGLG00100010036	UPF2	67	100.000	ENSETEG00000011583	-	64	100.000	Echinops_telfairi
ENSHGLG00100010036	UPF2	67	69.716	ENSEBUG00000012448	-	83	72.483	Eptatretus_burgeri
ENSHGLG00100010036	UPF2	100	94.874	ENSEASG00005019274	UPF2	99	94.795	Equus_asinus_asinus
ENSHGLG00100010036	UPF2	100	94.953	ENSECAG00000017022	UPF2	99	94.874	Equus_caballus
ENSHGLG00100010036	UPF2	81	91.961	ENSEEUG00000007819	UPF2	82	93.891	Erinaceus_europaeus
ENSHGLG00100010036	UPF2	100	77.621	ENSELUG00000012014	UPF2	99	78.366	Esox_lucius
ENSHGLG00100010036	UPF2	89	99.441	ENSFCAG00000005785	UPF2	99	94.484	Felis_catus
ENSHGLG00100010036	UPF2	89	93.980	ENSFALG00000001889	UPF2	86	94.519	Ficedula_albicollis
ENSHGLG00100010036	UPF2	100	95.501	ENSFDAG00000014348	UPF2	99	95.501	Fukomys_damarensis
ENSHGLG00100010036	UPF2	99	79.587	ENSFHEG00000009826	UPF2	99	77.919	Fundulus_heteroclitus
ENSHGLG00100010036	UPF2	93	80.394	ENSGMOG00000005557	UPF2	87	83.034	Gadus_morhua
ENSHGLG00100010036	UPF2	94	90.427	ENSGALG00000033772	UPF2	88	94.434	Gallus_gallus
ENSHGLG00100010036	UPF2	95	80.708	ENSGAFG00000020867	UPF2	99	78.342	Gambusia_affinis
ENSHGLG00100010036	UPF2	89	84.046	ENSGACG00000001080	UPF2	88	83.467	Gasterosteus_aculeatus
ENSHGLG00100010036	UPF2	94	90.077	ENSGAGG00000002700	UPF2	88	94.160	Gopherus_agassizii
ENSHGLG00100010036	UPF2	100	93.622	ENSGGOG00000001479	UPF2	99	92.913	Gorilla_gorilla
ENSHGLG00100010036	UPF2	100	78.013	ENSHBUG00000004249	UPF2	100	79.203	Haplochromis_burtoni
ENSHGLG00100010036	UPF2	100	87.770	ENSHGLG00000003822	-	99	86.480	Heterocephalus_glaber_female
ENSHGLG00100010036	UPF2	100	96.845	ENSHGLG00000015176	-	99	96.845	Heterocephalus_glaber_female
ENSHGLG00100010036	UPF2	100	76.713	ENSHCOG00000004025	UPF2	99	77.336	Hippocampus_comes
ENSHGLG00100010036	UPF2	94	81.319	ENSIPUG00000015524	UPF2	99	78.873	Ictalurus_punctatus
ENSHGLG00100010036	UPF2	100	95.110	ENSSTOG00000013075	UPF2	99	95.110	Ictidomys_tridecemlineatus
ENSHGLG00100010036	UPF2	94	92.894	ENSJJAG00000004913	Upf2	99	92.107	Jaculus_jaculus
ENSHGLG00100010036	UPF2	89	84.267	ENSKMAG00000001071	UPF2	99	77.981	Kryptolebias_marmoratus
ENSHGLG00100010036	UPF2	89	85.053	ENSLBEG00000016394	-	99	79.407	Labrus_bergylta
ENSHGLG00100010036	UPF2	67	87.035	ENSLBEG00000000728	-	92	79.557	Labrus_bergylta
ENSHGLG00100010036	UPF2	93	78.468	ENSLACG00000015945	UPF2	100	75.604	Latimeria_chalumnae
ENSHGLG00100010036	UPF2	89	87.857	ENSLOCG00000015698	UPF2	99	82.557	Lepisosteus_oculatus
ENSHGLG00100010036	UPF2	100	90.676	ENSMFAG00000043865	UPF2	99	92.992	Macaca_fascicularis
ENSHGLG00100010036	UPF2	100	90.676	ENSMMUG00000008241	UPF2	99	92.992	Macaca_mulatta
ENSHGLG00100010036	UPF2	80	88.484	ENSMNEG00000008062	UPF2	99	91.675	Macaca_nemestrina
ENSHGLG00100010036	UPF2	95	97.579	ENSMLEG00000036120	UPF2	99	97.573	Mandrillus_leucophaeus
ENSHGLG00100010036	UPF2	100	76.971	ENSMAMG00000018276	UPF2	99	79.001	Mastacembelus_armatus
ENSHGLG00100010036	UPF2	100	78.013	ENSMZEG00005021595	UPF2	99	79.203	Maylandia_zebra
ENSHGLG00100010036	UPF2	93	89.906	ENSMGAG00000004573	UPF2	87	93.890	Meleagris_gallopavo
ENSHGLG00100010036	UPF2	89	94.874	ENSMAUG00000016512	Upf2	99	92.035	Mesocricetus_auratus
ENSHGLG00100010036	UPF2	95	99.490	ENSMICG00000001716	UPF2	99	99.482	Microcebus_murinus
ENSHGLG00100010036	UPF2	100	93.607	ENSMOCG00000008263	Upf2	99	93.607	Microtus_ochrogaster
ENSHGLG00100010036	UPF2	89	82.395	ENSMMOG00000006528	UPF2	82	78.973	Mola_mola
ENSHGLG00100010036	UPF2	94	91.681	ENSMODG00000016794	UPF2	88	96.226	Monodelphis_domestica
ENSHGLG00100010036	UPF2	100	78.795	ENSMALG00000002663	UPF2	100	78.840	Monopterus_albus
ENSHGLG00100010036	UPF2	100	93.454	MGP_CAROLIEiJ_G0023157	Upf2	99	97.126	Mus_caroli
ENSHGLG00100010036	UPF2	100	93.375	ENSMUSG00000043241	Upf2	99	96.552	Mus_musculus
ENSHGLG00100010036	UPF2	100	93.297	MGP_PahariEiJ_G0019217	Upf2	99	96.360	Mus_pahari
ENSHGLG00100010036	UPF2	100	93.612	MGP_SPRETEiJ_G0024075	Upf2	99	96.552	Mus_spretus
ENSHGLG00100010036	UPF2	89	98.383	ENSMPUG00000001064	UPF2	99	94.484	Mustela_putorius_furo
ENSHGLG00100010036	UPF2	100	93.323	ENSMLUG00000000228	UPF2	100	93.559	Myotis_lucifugus
ENSHGLG00100010036	UPF2	100	78.013	ENSNBRG00000013629	UPF2	99	79.203	Neolamprologus_brichardi
ENSHGLG00100010036	UPF2	100	93.543	ENSNLEG00000012058	UPF2	99	92.835	Nomascus_leucogenys
ENSHGLG00100010036	UPF2	53	97.927	ENSMEUG00000002180	-	55	97.927	Notamacropus_eugenii
ENSHGLG00100010036	UPF2	83	100.000	ENSOPRG00000006801	-	81	100.000	Ochotona_princeps
ENSHGLG00100010036	UPF2	100	95.426	ENSODEG00000001290	UPF2	99	95.426	Octodon_degus
ENSHGLG00100010036	UPF2	100	78.091	ENSONIG00000017991	UPF2	99	79.281	Oreochromis_niloticus
ENSHGLG00100010036	UPF2	100	93.098	ENSOCUG00000006230	UPF2	100	93.412	Oryctolagus_cuniculus
ENSHGLG00100010036	UPF2	93	81.138	ENSORLG00000017189	UPF2	99	78.108	Oryzias_latipes
ENSHGLG00100010036	UPF2	100	77.049	ENSORLG00020005969	UPF2	88	83.779	Oryzias_latipes_hni
ENSHGLG00100010036	UPF2	100	77.049	ENSORLG00015005713	UPF2	88	83.779	Oryzias_latipes_hsok
ENSHGLG00100010036	UPF2	100	74.453	ENSOMEG00000023420	UPF2	98	75.509	Oryzias_melastigma
ENSHGLG00100010036	UPF2	100	90.443	ENSOGAG00000005796	UPF2	99	92.829	Otolemur_garnettii
ENSHGLG00100010036	UPF2	100	94.020	ENSOARG00000014587	UPF2	99	94.335	Ovis_aries
ENSHGLG00100010036	UPF2	100	90.297	ENSPPAG00000037953	UPF2	100	90.071	Pan_paniscus
ENSHGLG00100010036	UPF2	89	98.383	ENSPPRG00000000690	UPF2	99	94.484	Panthera_pardus
ENSHGLG00100010036	UPF2	89	98.383	ENSPTIG00000008867	UPF2	99	94.484	Panthera_tigris_altaica
ENSHGLG00100010036	UPF2	100	93.622	ENSPTRG00000002291	UPF2	99	92.913	Pan_troglodytes
ENSHGLG00100010036	UPF2	100	90.676	ENSPANG00000023399	UPF2	99	92.992	Papio_anubis
ENSHGLG00100010036	UPF2	89	84.018	ENSPKIG00000025502	UPF2	87	84.375	Paramormyrops_kingsleyae
ENSHGLG00100010036	UPF2	100	76.258	ENSPMGG00000005259	UPF2	100	76.965	Periophthalmus_magnuspinnatus
ENSHGLG00100010036	UPF2	93	83.673	ENSPEMG00000015731	Upf2	99	85.131	Peromyscus_maniculatus_bairdii
ENSHGLG00100010036	UPF2	94	92.044	ENSPCIG00000006656	UPF2	88	96.137	Phascolarctos_cinereus
ENSHGLG00100010036	UPF2	95	80.992	ENSPFOG00000017118	UPF2	99	78.655	Poecilia_formosa
ENSHGLG00100010036	UPF2	95	81.045	ENSPLAG00000005094	UPF2	99	78.655	Poecilia_latipinna
ENSHGLG00100010036	UPF2	95	81.045	ENSPMEG00000017009	UPF2	99	78.655	Poecilia_mexicana
ENSHGLG00100010036	UPF2	95	80.912	ENSPREG00000021880	UPF2	100	78.918	Poecilia_reticulata
ENSHGLG00100010036	UPF2	67	98.321	ENSPPYG00000002089	-	99	98.321	Pongo_abelii
ENSHGLG00100010036	UPF2	91	86.385	ENSPCAG00000000684	UPF2	90	86.937	Procavia_capensis
ENSHGLG00100010036	UPF2	100	90.773	ENSPCOG00000021656	UPF2	100	89.984	Propithecus_coquereli
ENSHGLG00100010036	UPF2	100	86.142	ENSPVAG00000017286	UPF2	99	87.244	Pteropus_vampyrus
ENSHGLG00100010036	UPF2	100	75.587	ENSPNYG00000017096	UPF2	100	76.779	Pundamilia_nyererei
ENSHGLG00100010036	UPF2	100	78.173	ENSPNAG00000009357	UPF2	87	85.791	Pygocentrus_nattereri
ENSHGLG00100010036	UPF2	100	87.745	ENSRNOG00000023593	Upf2	98	100.000	Rattus_norvegicus
ENSHGLG00100010036	UPF2	100	92.581	ENSRBIG00000037780	UPF2	100	92.581	Rhinopithecus_bieti
ENSHGLG00100010036	UPF2	100	90.669	ENSRROG00000043547	UPF2	99	92.908	Rhinopithecus_roxellana
ENSHGLG00100010036	UPF2	100	94.322	ENSSBOG00000020012	UPF2	99	94.322	Saimiri_boliviensis_boliviensis
ENSHGLG00100010036	UPF2	89	84.848	ENSSFOG00015023788	upf2	100	79.625	Scleropages_formosus
ENSHGLG00100010036	UPF2	89	82.206	ENSSMAG00000007637	UPF2	100	76.744	Scophthalmus_maximus
ENSHGLG00100010036	UPF2	100	77.778	ENSSDUG00000017244	UPF2	99	79.437	Seriola_dumerili
ENSHGLG00100010036	UPF2	100	76.217	ENSSLDG00000016866	UPF2	82	79.823	Seriola_lalandi_dorsalis
ENSHGLG00100010036	UPF2	100	91.017	ENSSARG00000008615	UPF2	99	92.435	Sorex_araneus
ENSHGLG00100010036	UPF2	88	92.120	ENSSPUG00000014544	UPF2	99	87.579	Sphenodon_punctatus
ENSHGLG00100010036	UPF2	69	98.385	ENSSSCG00000011117	-	99	98.385	Sus_scrofa
ENSHGLG00100010036	UPF2	89	94.604	ENSTGUG00000002163	-	88	94.514	Taeniopygia_guttata
ENSHGLG00100010036	UPF2	100	78.845	ENSTRUG00000007519	UPF2	99	78.890	Takifugu_rubripes
ENSHGLG00100010036	UPF2	100	78.031	ENSTNIG00000004453	UPF2	90	83.808	Tetraodon_nigroviridis
ENSHGLG00100010036	UPF2	93	86.525	ENSTBEG00000012679	UPF2	93	85.932	Tupaia_belangeri
ENSHGLG00100010036	UPF2	100	94.479	ENSTTRG00000016388	UPF2	99	94.401	Tursiops_truncatus
ENSHGLG00100010036	UPF2	81	100.000	ENSUAMG00000023560	UPF2	97	100.000	Ursus_americanus
ENSHGLG00100010036	UPF2	100	95.114	ENSUMAG00000012953	UPF2	95	95.114	Ursus_maritimus
ENSHGLG00100010036	UPF2	85	96.774	ENSVPAG00000006763	UPF2	83	96.774	Vicugna_pacos
ENSHGLG00100010036	UPF2	89	98.383	ENSVVUG00000006166	UPF2	99	94.563	Vulpes_vulpes
ENSHGLG00100010036	UPF2	100	81.075	ENSXETG00000033103	UPF2	68	91.465	Xenopus_tropicalis
ENSHGLG00100010036	UPF2	95	80.404	ENSXCOG00000011604	UPF2	100	78.655	Xiphophorus_couchianus
ENSHGLG00100010036	UPF2	95	80.824	ENSXMAG00000017209	UPF2	99	78.577	Xiphophorus_maculatus