EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100012449 (Gene tree)
Gene ID: -
Gene Symbol: SND1
Alias: TDRD11|p100
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Minus strand
Length: 450853 bases
Position: chrJH170314.1:4025360-4476212
Accession: 30646
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100016878	TUDOR	PF00567.24	6.7e-28	1	1
ENSHGLP00100016878	SNase	PF00565.17	2.8e-69	1	5
ENSHGLP00100016878	SNase	PF00565.17	2.8e-69	2	5
ENSHGLP00100016878	SNase	PF00565.17	2.8e-69	3	5
ENSHGLP00100016878	SNase	PF00565.17	2.8e-69	4	5
ENSHGLP00100016878	SNase	PF00565.17	2.8e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100017060	SND1-202	1608	-	ENSHGLP00100016879	10 (aa)	-	UPI0001F794D9
ENSHGLT00100017059	SND1-201	4079	-	ENSHGLP00100016878	905 (aa)	-	G5BHA6

Gene Model

Click here to download ENSHGLG00100012449's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100012449's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100012449	SND1	100	97.459	ENSG00000197157	SND1	99	97.459	Homo_sapiens
ENSHGLG00100012449	SND1	99	84.222	ENSAPOG00000017599	snd1	99	84.222	Acanthochromis_polyacanthus
ENSHGLG00100012449	SND1	100	97.133	ENSAMEG00000004664	SND1	94	97.133	Ailuropoda_melanoleuca
ENSHGLG00100012449	SND1	99	81.747	ENSACIG00000003551	snd1	99	81.126	Amphilophus_citrinellus
ENSHGLG00100012449	SND1	99	84.000	ENSAOCG00000014166	snd1	99	84.000	Amphiprion_ocellaris
ENSHGLG00100012449	SND1	99	84.000	ENSAPEG00000007067	snd1	99	84.000	Amphiprion_percula
ENSHGLG00100012449	SND1	97	83.808	ENSATEG00000018475	snd1	88	83.808	Anabas_testudineus
ENSHGLG00100012449	SND1	100	97.680	ENSANAG00000034463	SND1	99	98.077	Aotus_nancymaae
ENSHGLG00100012449	SND1	99	83.187	ENSACLG00000022897	snd1	99	83.187	Astatotilapia_calliptera
ENSHGLG00100012449	SND1	99	84.410	ENSAMXG00000016318	snd1	98	84.410	Astyanax_mexicanus
ENSHGLG00100012449	SND1	100	97.790	ENSBTAG00000010692	SND1	99	97.790	Bos_taurus
ENSHGLG00100012449	SND1	99	46.595	WBGene00006626	tsn-1	99	47.027	Caenorhabditis_elegans
ENSHGLG00100012449	SND1	100	97.459	ENSCJAG00000017668	SND1	99	97.851	Callithrix_jacchus
ENSHGLG00100012449	SND1	100	97.569	ENSCAFG00000001700	SND1	99	97.569	Canis_familiaris
ENSHGLG00100012449	SND1	100	97.569	ENSCAFG00020021639	SND1	99	97.569	Canis_lupus_dingo
ENSHGLG00100012449	SND1	100	97.901	ENSCHIG00000023390	SND1	99	97.901	Capra_hircus
ENSHGLG00100012449	SND1	73	98.415	ENSTSYG00000004979	SND1	96	98.415	Carlito_syrichta
ENSHGLG00100012449	SND1	99	84.889	ENSCAPG00000010677	SND1	98	84.889	Cavia_aperea
ENSHGLG00100012449	SND1	100	97.680	ENSCPOG00000006251	SND1	99	97.680	Cavia_porcellus
ENSHGLG00100012449	SND1	100	97.790	ENSCCAG00000036847	SND1	99	97.790	Cebus_capucinus
ENSHGLG00100012449	SND1	100	97.680	ENSCATG00000035214	SND1	99	98.077	Cercocebus_atys
ENSHGLG00100012449	SND1	100	97.680	ENSCLAG00000011796	SND1	99	97.680	Chinchilla_lanigera
ENSHGLG00100012449	SND1	100	97.680	ENSCSAG00000010182	SND1	99	97.680	Chlorocebus_sabaeus
ENSHGLG00100012449	SND1	78	87.255	ENSCHOG00000002218	SND1	86	87.255	Choloepus_hoffmanni
ENSHGLG00100012449	SND1	99	91.621	ENSCPBG00000018094	SND1	99	91.621	Chrysemys_picta_bellii
ENSHGLG00100012449	SND1	98	56.811	ENSCING00000000524	-	99	56.346	Ciona_intestinalis
ENSHGLG00100012449	SND1	99	58.086	ENSCSAVG00000008807	-	99	58.086	Ciona_savignyi
ENSHGLG00100012449	SND1	100	97.680	ENSCANG00000035119	SND1	99	97.680	Colobus_angolensis_palliatus
ENSHGLG00100012449	SND1	100	96.354	ENSCGRG00001022514	Snd1	99	96.354	Cricetulus_griseus_chok1gshd
ENSHGLG00100012449	SND1	98	96.833	ENSCGRG00000012277	Snd1	99	96.833	Cricetulus_griseus_crigri
ENSHGLG00100012449	SND1	99	83.781	ENSCSEG00000008661	snd1	98	83.781	Cynoglossus_semilaevis
ENSHGLG00100012449	SND1	99	84.899	ENSCVAG00000010316	snd1	100	83.333	Cyprinodon_variegatus
ENSHGLG00100012449	SND1	99	84.650	ENSDARG00000006766	snd1	97	87.050	Danio_rerio
ENSHGLG00100012449	SND1	98	95.265	ENSDNOG00000006795	SND1	100	95.265	Dasypus_novemcinctus
ENSHGLG00100012449	SND1	100	97.901	ENSDORG00000000336	Snd1	99	97.901	Dipodomys_ordii
ENSHGLG00100012449	SND1	99	50.488	FBgn0035121	Tudor-SN	99	50.215	Drosophila_melanogaster
ENSHGLG00100012449	SND1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSHGLG00100012449	SND1	57	67.297	ENSEBUG00000014201	-	84	75.956	Eptatretus_burgeri
ENSHGLG00100012449	SND1	100	95.983	ENSEASG00005008513	SND1	99	95.983	Equus_asinus_asinus
ENSHGLG00100012449	SND1	100	97.569	ENSECAG00000011451	SND1	99	97.569	Equus_caballus
ENSHGLG00100012449	SND1	99	86.511	ENSEEUG00000014737	SND1	99	86.188	Erinaceus_europaeus
ENSHGLG00100012449	SND1	99	82.359	ENSELUG00000001805	snd1	96	82.359	Esox_lucius
ENSHGLG00100012449	SND1	100	97.569	ENSFCAG00000008289	SND1	99	97.569	Felis_catus
ENSHGLG00100012449	SND1	100	98.343	ENSFDAG00000015881	SND1	99	98.343	Fukomys_damarensis
ENSHGLG00100012449	SND1	99	81.613	ENSFHEG00000004093	snd1	99	83.295	Fundulus_heteroclitus
ENSHGLG00100012449	SND1	63	74.294	ENSGMOG00000018932	snd1	65	74.294	Gadus_morhua
ENSHGLG00100012449	SND1	99	84.761	ENSGAFG00000008421	snd1	99	84.780	Gambusia_affinis
ENSHGLG00100012449	SND1	100	54.039	ENSGACG00000019793	snd1	99	54.039	Gasterosteus_aculeatus
ENSHGLG00100012449	SND1	100	97.680	ENSGGOG00000009614	SND1	99	98.077	Gorilla_gorilla
ENSHGLG00100012449	SND1	99	83.370	ENSHBUG00000019135	snd1	99	83.370	Haplochromis_burtoni
ENSHGLG00100012449	SND1	100	99.558	ENSHGLG00000003618	SND1	99	99.558	Heterocephalus_glaber_female
ENSHGLG00100012449	SND1	99	83.781	ENSHCOG00000005266	snd1	98	83.781	Hippocampus_comes
ENSHGLG00100012449	SND1	99	83.204	ENSIPUG00000013279	snd1	98	83.204	Ictalurus_punctatus
ENSHGLG00100012449	SND1	100	97.901	ENSSTOG00000002140	SND1	99	97.901	Ictidomys_tridecemlineatus
ENSHGLG00100012449	SND1	100	97.790	ENSJJAG00000009561	Snd1	99	97.790	Jaculus_jaculus
ENSHGLG00100012449	SND1	99	83.718	ENSKMAG00000016997	snd1	99	83.718	Kryptolebias_marmoratus
ENSHGLG00100012449	SND1	99	85.569	ENSLBEG00000013563	snd1	99	82.983	Labrus_bergylta
ENSHGLG00100012449	SND1	99	85.116	ENSLOCG00000015537	snd1	99	84.666	Lepisosteus_oculatus
ENSHGLG00100012449	SND1	100	97.127	ENSLAFG00000009696	SND1	99	97.127	Loxodonta_africana
ENSHGLG00100012449	SND1	100	97.680	ENSMFAG00000038114	SND1	99	98.077	Macaca_fascicularis
ENSHGLG00100012449	SND1	100	97.680	ENSMMUG00000015432	SND1	99	97.680	Macaca_mulatta
ENSHGLG00100012449	SND1	100	97.680	ENSMNEG00000039808	SND1	100	98.079	Macaca_nemestrina
ENSHGLG00100012449	SND1	100	97.569	ENSMLEG00000029040	SND1	100	97.966	Mandrillus_leucophaeus
ENSHGLG00100012449	SND1	99	83.352	ENSMAMG00000011739	snd1	99	83.352	Mastacembelus_armatus
ENSHGLG00100012449	SND1	99	83.187	ENSMZEG00005005681	snd1	99	83.187	Maylandia_zebra
ENSHGLG00100012449	SND1	100	98.011	ENSMICG00000000097	SND1	99	98.011	Microcebus_murinus
ENSHGLG00100012449	SND1	100	97.017	ENSMOCG00000005040	Snd1	99	97.017	Microtus_ochrogaster
ENSHGLG00100012449	SND1	100	83.352	ENSMMOG00000001795	snd1	99	83.352	Mola_mola
ENSHGLG00100012449	SND1	99	95.206	ENSMODG00000015182	SND1	99	94.807	Monodelphis_domestica
ENSHGLG00100012449	SND1	99	83.113	ENSMALG00000012071	snd1	99	83.113	Monopterus_albus
ENSHGLG00100012449	SND1	100	97.348	MGP_CAROLIEiJ_G0028159	Snd1	99	97.348	Mus_caroli
ENSHGLG00100012449	SND1	100	97.127	ENSMUSG00000001424	Snd1	99	97.127	Mus_musculus
ENSHGLG00100012449	SND1	100	97.348	MGP_PahariEiJ_G0021917	Snd1	99	97.449	Mus_pahari
ENSHGLG00100012449	SND1	100	97.348	MGP_SPRETEiJ_G0029159	Snd1	99	97.348	Mus_spretus
ENSHGLG00100012449	SND1	100	97.127	ENSMPUG00000006545	SND1	99	97.127	Mustela_putorius_furo
ENSHGLG00100012449	SND1	98	96.648	ENSMLUG00000017130	SND1	99	96.648	Myotis_lucifugus
ENSHGLG00100012449	SND1	100	97.348	ENSNGAG00000011186	Snd1	99	97.348	Nannospalax_galili
ENSHGLG00100012449	SND1	99	83.077	ENSNBRG00000006681	snd1	99	83.077	Neolamprologus_brichardi
ENSHGLG00100012449	SND1	100	97.680	ENSNLEG00000012263	SND1	100	98.079	Nomascus_leucogenys
ENSHGLG00100012449	SND1	92	100.000	ENSOPRG00000013405	SND1	92	100.000	Ochotona_princeps
ENSHGLG00100012449	SND1	99	98.228	ENSODEG00000011502	SND1	99	98.228	Octodon_degus
ENSHGLG00100012449	SND1	99	82.967	ENSONIG00000011481	snd1	97	82.967	Oreochromis_niloticus
ENSHGLG00100012449	SND1	98	93.919	ENSOANG00000000817	SND1	99	93.245	Ornithorhynchus_anatinus
ENSHGLG00100012449	SND1	100	96.796	ENSOCUG00000001620	SND1	99	96.796	Oryctolagus_cuniculus
ENSHGLG00100012449	SND1	99	83.687	ENSORLG00000015201	snd1	99	83.113	Oryzias_latipes
ENSHGLG00100012449	SND1	99	83.799	ENSORLG00020013991	snd1	99	83.223	Oryzias_latipes_hni
ENSHGLG00100012449	SND1	99	83.799	ENSORLG00015012436	snd1	99	83.223	Oryzias_latipes_hsok
ENSHGLG00100012449	SND1	99	83.893	ENSOMEG00000006406	snd1	98	83.893	Oryzias_melastigma
ENSHGLG00100012449	SND1	100	97.354	ENSOGAG00000013356	SND1	94	97.354	Otolemur_garnettii
ENSHGLG00100012449	SND1	98	95.480	ENSOARG00000002149	SND1	100	95.480	Ovis_aries
ENSHGLG00100012449	SND1	100	97.569	ENSPPAG00000042947	SND1	99	97.569	Pan_paniscus
ENSHGLG00100012449	SND1	100	97.569	ENSPPRG00000004494	SND1	99	97.569	Panthera_pardus
ENSHGLG00100012449	SND1	100	97.459	ENSPTIG00000014214	SND1	99	97.459	Panthera_tigris_altaica
ENSHGLG00100012449	SND1	100	97.569	ENSPTRG00000023911	SND1	99	97.964	Pan_troglodytes
ENSHGLG00100012449	SND1	98	98.077	ENSPANG00000011997	SND1	99	98.077	Papio_anubis
ENSHGLG00100012449	SND1	99	80.989	ENSPKIG00000023494	snd1	99	80.744	Paramormyrops_kingsleyae
ENSHGLG00100012449	SND1	92	82.395	ENSPMGG00000003629	snd1	100	82.395	Periophthalmus_magnuspinnatus
ENSHGLG00100012449	SND1	100	97.127	ENSPEMG00000010240	Snd1	99	97.127	Peromyscus_maniculatus_bairdii
ENSHGLG00100012449	SND1	97	73.672	ENSPMAG00000007915	-	99	73.672	Petromyzon_marinus
ENSHGLG00100012449	SND1	99	95.541	ENSPCIG00000011561	SND1	99	95.138	Phascolarctos_cinereus
ENSHGLG00100012449	SND1	99	84.205	ENSPFOG00000001557	snd1	99	84.205	Poecilia_formosa
ENSHGLG00100012449	SND1	99	84.205	ENSPLAG00000018459	snd1	96	84.205	Poecilia_latipinna
ENSHGLG00100012449	SND1	99	84.650	ENSPMEG00000006803	snd1	99	84.650	Poecilia_mexicana
ENSHGLG00100012449	SND1	99	84.538	ENSPREG00000002189	snd1	99	84.538	Poecilia_reticulata
ENSHGLG00100012449	SND1	93	97.378	ENSPPYG00000017972	SND1	99	97.378	Pongo_abelii
ENSHGLG00100012449	SND1	99	85.619	ENSPCAG00000011305	SND1	99	85.304	Procavia_capensis
ENSHGLG00100012449	SND1	100	97.680	ENSPCOG00000026791	SND1	100	98.079	Propithecus_coquereli
ENSHGLG00100012449	SND1	100	95.691	ENSPVAG00000013945	SND1	99	95.691	Pteropus_vampyrus
ENSHGLG00100012449	SND1	99	83.187	ENSPNYG00000000932	snd1	99	83.187	Pundamilia_nyererei
ENSHGLG00100012449	SND1	99	83.700	ENSPNAG00000001206	snd1	99	83.700	Pygocentrus_nattereri
ENSHGLG00100012449	SND1	100	97.127	ENSRNOG00000031173	Snd1	100	96.158	Rattus_norvegicus
ENSHGLG00100012449	SND1	73	98.859	ENSRBIG00000027782	-	93	98.859	Rhinopithecus_bieti
ENSHGLG00100012449	SND1	100	97.680	ENSRROG00000033020	SND1	99	97.680	Rhinopithecus_roxellana
ENSHGLG00100012449	SND1	100	97.680	ENSSBOG00000032461	SND1	99	98.077	Saimiri_boliviensis_boliviensis
ENSHGLG00100012449	SND1	98	92.342	ENSSHAG00000015359	SND1	100	92.342	Sarcophilus_harrisii
ENSHGLG00100012449	SND1	99	83.019	ENSSFOG00015001103	snd1	98	83.019	Scleropages_formosus
ENSHGLG00100012449	SND1	99	83.333	ENSSMAG00000001932	snd1	94	82.450	Scophthalmus_maximus
ENSHGLG00100012449	SND1	99	84.093	ENSSDUG00000002699	snd1	92	84.093	Seriola_dumerili
ENSHGLG00100012449	SND1	99	76.752	ENSSLDG00000001950	snd1	98	76.752	Seriola_lalandi_dorsalis
ENSHGLG00100012449	SND1	87	97.170	ENSSARG00000004877	SND1	92	97.170	Sorex_araneus
ENSHGLG00100012449	SND1	73	88.174	ENSSPUG00000017586	SND1	96	88.174	Sphenodon_punctatus
ENSHGLG00100012449	SND1	74	86.736	ENSSPAG00000021398	snd1	96	86.736	Stegastes_partitus
ENSHGLG00100012449	SND1	100	97.459	ENSSSCG00000016590	SND1	99	97.459	Sus_scrofa
ENSHGLG00100012449	SND1	99	83.032	ENSTRUG00000014067	snd1	99	82.709	Takifugu_rubripes
ENSHGLG00100012449	SND1	99	83.260	ENSTNIG00000011019	snd1	97	86.003	Tetraodon_nigroviridis
ENSHGLG00100012449	SND1	94	92.571	ENSTBEG00000003999	SND1	100	92.571	Tupaia_belangeri
ENSHGLG00100012449	SND1	100	93.039	ENSTTRG00000006059	SND1	99	93.039	Tursiops_truncatus
ENSHGLG00100012449	SND1	70	87.895	ENSUAMG00000002820	-	88	87.895	Ursus_americanus
ENSHGLG00100012449	SND1	86	97.909	ENSUAMG00000005604	-	93	97.909	Ursus_americanus
ENSHGLG00100012449	SND1	100	97.459	ENSUMAG00000005960	SND1	99	97.459	Ursus_maritimus
ENSHGLG00100012449	SND1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSHGLG00100012449	SND1	100	97.348	ENSVVUG00000007226	SND1	99	97.348	Vulpes_vulpes
ENSHGLG00100012449	SND1	97	84.407	ENSXETG00000023043	snd1	100	84.325	Xenopus_tropicalis
ENSHGLG00100012449	SND1	93	81.235	ENSXCOG00000013629	snd1	99	81.235	Xiphophorus_couchianus
ENSHGLG00100012449	SND1	99	84.761	ENSXMAG00000011469	snd1	99	84.761	Xiphophorus_maculatus