EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHGLG00100015610 (Gene tree)
Gene ID
-
Gene Symbol
LSM5
Alias
-
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Heterocephalus_glaber_male
Status
putative
Strand
Minus strand
Length
3729 bases
Position
chrJH167620.1:187713-191441
Accession
17162
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHGLP00100021201LSMPF01423.221.9e-2011
ENSHGLP00100021203LSMPF01423.222.1e-0611
ENSHGLP00100021202LSMPF01423.223.4e-0611
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHGLT00100021427LSM5-202174-ENSHGLP0010002120257 (aa)--
ENSHGLT00100021426LSM5-201270-ENSHGLP0010002120189 (aa)--
ENSHGLT00100021428LSM5-203174-ENSHGLP0010002120357 (aa)--
Gene Model
Click here to download ENSHGLG00100015610's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100015610's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHGLG00100015610LSM59333.333ENSHGLG00100011343LSM38233.333
ENSHGLG00100015610LSM56636.066ENSHGLG00100010028SNRPE6436.066
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHGLG00100015610LSM510096.703ENSG00000106355LSM5100100.000Homo_sapiens
ENSHGLG00100015610LSM59091.463ENSAPOG00000011743LSM510096.774Acanthochromis_polyacanthus
ENSHGLG00100015610LSM510092.308ENSAPOG00000020779LSM510092.308Acanthochromis_polyacanthus
ENSHGLG00100015610LSM510096.703ENSAMEG00000006700LSM510096.703Ailuropoda_melanoleuca
ENSHGLG00100015610LSM59389.091ENSACIG00000019185lsm59889.091Amphilophus_citrinellus
ENSHGLG00100015610LSM510092.308ENSAOCG00000001636lsm510092.308Amphiprion_ocellaris
ENSHGLG00100015610LSM510092.308ENSAPEG00000008151lsm510092.308Amphiprion_percula
ENSHGLG00100015610LSM57597.674ENSAPEG00000008201lsm510096.774Amphiprion_percula
ENSHGLG00100015610LSM510088.136ENSATEG00000020470lsm510088.136Anabas_testudineus
ENSHGLG00100015610LSM582100.000ENSAPLG00000008171LSM599100.000Anas_platyrhynchos
ENSHGLG00100015610LSM57993.617ENSACAG00000009530LSM59394.643Anolis_carolinensis
ENSHGLG00100015610LSM59992.222ENSANAG00000024192-9492.222Aotus_nancymaae
ENSHGLG00100015610LSM510079.775ENSANAG00000037758-10079.775Aotus_nancymaae
ENSHGLG00100015610LSM510095.604ENSANAG00000034409-10095.604Aotus_nancymaae
ENSHGLG00100015610LSM59691.954ENSACLG00000012891lsm59991.954Astatotilapia_calliptera
ENSHGLG00100015610LSM510078.723ENSAMXG00000035543lsm510078.723Astyanax_mexicanus
ENSHGLG00100015610LSM510096.703ENSBTAG00000002332LSM510096.703Bos_taurus
ENSHGLG00100015610LSM59671.930ENSBTAG00000052014-7571.930Bos_taurus
ENSHGLG00100015610LSM510070.330WBGene00003079lsm-510070.330Caenorhabditis_elegans
ENSHGLG00100015610LSM59984.444ENSCJAG00000005678-10084.444Callithrix_jacchus
ENSHGLG00100015610LSM510096.703ENSCJAG00000047379LSM510081.250Callithrix_jacchus
ENSHGLG00100015610LSM57993.617ENSCAFG00000030781-5593.617Canis_familiaris
ENSHGLG00100015610LSM510095.604ENSCAFG00000019261-10095.604Canis_familiaris
ENSHGLG00100015610LSM510096.703ENSCAFG00020004946LSM510096.703Canis_lupus_dingo
ENSHGLG00100015610LSM58174.324ENSCHIG00000021428-9571.591Capra_hircus
ENSHGLG00100015610LSM510096.703ENSCHIG00000024539LSM510096.703Capra_hircus
ENSHGLG00100015610LSM510094.505ENSCHIG00000004079-10094.505Capra_hircus
ENSHGLG00100015610LSM510096.703ENSTSYG00000006449-10096.703Carlito_syrichta
ENSHGLG00100015610LSM510071.429ENSTSYG00000036637-10071.429Carlito_syrichta
ENSHGLG00100015610LSM510084.615ENSTSYG00000028728-10084.615Carlito_syrichta
ENSHGLG00100015610LSM510079.775ENSTSYG00000026530-9179.775Carlito_syrichta
ENSHGLG00100015610LSM58492.000ENSCAPG00000006980LSM510092.000Cavia_aperea
ENSHGLG00100015610LSM510096.703ENSCPOG00000036386LSM510096.703Cavia_porcellus
ENSHGLG00100015610LSM510096.703ENSCCAG00000037808-10096.703Cebus_capucinus
ENSHGLG00100015610LSM510095.604ENSCCAG00000032123-10095.604Cebus_capucinus
ENSHGLG00100015610LSM510082.022ENSCCAG00000032792-10082.022Cebus_capucinus
ENSHGLG00100015610LSM510095.604ENSCCAG00000000821-10095.604Cebus_capucinus
ENSHGLG00100015610LSM510068.539ENSCCAG00000037334-10068.539Cebus_capucinus
ENSHGLG00100015610LSM510096.703ENSCATG00000040218LSM5100100.000Cercocebus_atys
ENSHGLG00100015610LSM59985.556ENSCATG00000014790-9592.727Cercocebus_atys
ENSHGLG00100015610LSM510096.703ENSCLAG00000000202LSM510096.703Chinchilla_lanigera
ENSHGLG00100015610LSM510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSHGLG00100015610LSM58296.000ENSCHOG00000005335LSM59996.000Choloepus_hoffmanni
ENSHGLG00100015610LSM510096.703ENSCPBG00000013685LSM510096.703Chrysemys_picta_bellii
ENSHGLG00100015610LSM59885.393ENSCING00000020625-9985.393Ciona_intestinalis
ENSHGLG00100015610LSM59484.884ENSCSAVG00000001439-9884.884Ciona_savignyi
ENSHGLG00100015610LSM510096.703ENSCANG00000039909LSM5100100.000Colobus_angolensis_palliatus
ENSHGLG00100015610LSM510096.703ENSCGRG00001015461Lsm510096.703Cricetulus_griseus_chok1gshd
ENSHGLG00100015610LSM584100.000ENSCGRG00000007677Lsm5100100.000Cricetulus_griseus_crigri
ENSHGLG00100015610LSM510088.136ENSCSEG00000015286lsm510088.136Cynoglossus_semilaevis
ENSHGLG00100015610LSM510091.209ENSCVAG00000004262lsm510091.209Cyprinodon_variegatus
ENSHGLG00100015610LSM510091.209ENSDARG00000071573lsm510096.774Danio_rerio
ENSHGLG00100015610LSM510096.703ENSDNOG00000034958LSM510096.703Dasypus_novemcinctus
ENSHGLG00100015610LSM59687.356ENSDNOG00000049495-9687.356Dasypus_novemcinctus
ENSHGLG00100015610LSM510096.703ENSDORG00000009422Lsm510096.703Dipodomys_ordii
ENSHGLG00100015610LSM59280.952FBgn0035675CG66109280.952Drosophila_melanogaster
ENSHGLG00100015610LSM59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSHGLG00100015610LSM58381.081ENSETEG00000016074-9881.081Echinops_telfairi
ENSHGLG00100015610LSM510096.703ENSETEG00000018068LSM510096.703Echinops_telfairi
ENSHGLG00100015610LSM510075.824ENSETEG00000010651-10075.824Echinops_telfairi
ENSHGLG00100015610LSM59865.169ENSETEG00000000777-9965.169Echinops_telfairi
ENSHGLG00100015610LSM510087.912ENSEBUG00000008540lsm510087.912Eptatretus_burgeri
ENSHGLG00100015610LSM510096.703ENSEASG00005003500LSM510096.703Equus_asinus_asinus
ENSHGLG00100015610LSM510082.418ENSECAG00000018445LSM510082.418Equus_caballus
ENSHGLG00100015610LSM57593.023ENSEEUG00000004102LSM59594.737Erinaceus_europaeus
ENSHGLG00100015610LSM510091.209ENSELUG00000007792lsm510091.209Esox_lucius
ENSHGLG00100015610LSM510096.703ENSFCAG00000000230LSM510096.703Felis_catus
ENSHGLG00100015610LSM584100.000ENSFALG00000001892LSM590100.000Ficedula_albicollis
ENSHGLG00100015610LSM58468.000ENSFDAG00000008685-8868.000Fukomys_damarensis
ENSHGLG00100015610LSM510096.703ENSFDAG00000008767LSM510096.703Fukomys_damarensis
ENSHGLG00100015610LSM59879.310ENSFHEG00000004011lsm59479.310Fundulus_heteroclitus
ENSHGLG00100015610LSM59991.111ENSGMOG00000018235lsm510091.111Gadus_morhua
ENSHGLG00100015610LSM510095.604ENSGALG00000041625LSM510095.604Gallus_gallus
ENSHGLG00100015610LSM57597.674ENSGAFG00000016824lsm510096.774Gambusia_affinis
ENSHGLG00100015610LSM510092.308ENSGACG00000005528lsm510092.308Gasterosteus_aculeatus
ENSHGLG00100015610LSM510096.703ENSGAGG00000015593LSM510096.703Gopherus_agassizii
ENSHGLG00100015610LSM510096.703ENSGGOG00000043469LSM510096.703Gorilla_gorilla
ENSHGLG00100015610LSM59691.954ENSHBUG00000013773lsm59991.954Haplochromis_burtoni
ENSHGLG00100015610LSM510096.703ENSHGLG00000011765LSM510096.703Heterocephalus_glaber_female
ENSHGLG00100015610LSM510088.136ENSHCOG00000008288lsm510088.136Hippocampus_comes
ENSHGLG00100015610LSM510090.110ENSIPUG00000021095LSM510090.110Ictalurus_punctatus
ENSHGLG00100015610LSM510096.703ENSSTOG00000012662LSM510096.703Ictidomys_tridecemlineatus
ENSHGLG00100015610LSM59279.070ENSSTOG00000033886-9779.070Ictidomys_tridecemlineatus
ENSHGLG00100015610LSM510068.539ENSJJAG00000016144-9268.539Jaculus_jaculus
ENSHGLG00100015610LSM510094.505ENSJJAG00000012145-10094.505Jaculus_jaculus
ENSHGLG00100015610LSM58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSHGLG00100015610LSM510091.209ENSKMAG00000021861lsm510091.209Kryptolebias_marmoratus
ENSHGLG00100015610LSM57985.106ENSLBEG00000017379lsm59275.000Labrus_bergylta
ENSHGLG00100015610LSM510083.516ENSLBEG00000009235LSM57083.516Labrus_bergylta
ENSHGLG00100015610LSM510092.308ENSLACG00000022448LSM510092.308Latimeria_chalumnae
ENSHGLG00100015610LSM510091.209ENSLOCG00000012903lsm510091.209Lepisosteus_oculatus
ENSHGLG00100015610LSM510069.231ENSLAFG00000027938-10069.231Loxodonta_africana
ENSHGLG00100015610LSM510096.703ENSLAFG00000029579LSM510096.703Loxodonta_africana
ENSHGLG00100015610LSM59882.759ENSMFAG00000031187-9282.759Macaca_fascicularis
ENSHGLG00100015610LSM510094.505ENSMFAG00000030152-10094.505Macaca_fascicularis
ENSHGLG00100015610LSM510096.703ENSMFAG00000038508LSM510096.703Macaca_fascicularis
ENSHGLG00100015610LSM59986.667ENSMMUG00000039822-10086.667Macaca_mulatta
ENSHGLG00100015610LSM510094.505ENSMMUG00000030131-10094.505Macaca_mulatta
ENSHGLG00100015610LSM510084.375ENSMMUG00000045129-10084.375Macaca_mulatta
ENSHGLG00100015610LSM510094.505ENSMNEG00000037935-10094.505Macaca_nemestrina
ENSHGLG00100015610LSM510096.703ENSMNEG00000015331LSM5100100.000Macaca_nemestrina
ENSHGLG00100015610LSM59885.393ENSMLEG00000034037-10085.393Mandrillus_leucophaeus
ENSHGLG00100015610LSM510096.703ENSMLEG00000024945LSM510096.703Mandrillus_leucophaeus
ENSHGLG00100015610LSM510087.912ENSMAMG00000012869lsm510087.912Mastacembelus_armatus
ENSHGLG00100015610LSM59691.954ENSMZEG00005019554lsm59991.954Maylandia_zebra
ENSHGLG00100015610LSM510095.604ENSMGAG00000012117LSM510095.604Meleagris_gallopavo
ENSHGLG00100015610LSM510095.604ENSMAUG00000008132-10095.604Mesocricetus_auratus
ENSHGLG00100015610LSM510096.703ENSMAUG00000012222Lsm510096.703Mesocricetus_auratus
ENSHGLG00100015610LSM59978.409ENSMICG00000033928-9678.409Microcebus_murinus
ENSHGLG00100015610LSM510096.703ENSMICG00000005353LSM510096.703Microcebus_murinus
ENSHGLG00100015610LSM510096.703ENSMOCG00000012018Lsm510096.703Microtus_ochrogaster
ENSHGLG00100015610LSM59093.750ENSMMOG00000004026lsm59293.750Mola_mola
ENSHGLG00100015610LSM575100.000ENSMODG00000013274-100100.000Monodelphis_domestica
ENSHGLG00100015610LSM57590.698ENSMALG00000010343lsm510091.935Monopterus_albus
ENSHGLG00100015610LSM510096.703MGP_CAROLIEiJ_G0028421Lsm510096.703Mus_caroli
ENSHGLG00100015610LSM510096.703ENSMUSG00000091625Lsm510096.703Mus_musculus
ENSHGLG00100015610LSM510096.703MGP_PahariEiJ_G0022171Lsm510096.703Mus_pahari
ENSHGLG00100015610LSM510096.703MGP_SPRETEiJ_G0029423Lsm510096.703Mus_spretus
ENSHGLG00100015610LSM510096.703ENSMLUG00000017028LSM510096.703Myotis_lucifugus
ENSHGLG00100015610LSM59976.667ENSNGAG00000022569-9676.667Nannospalax_galili
ENSHGLG00100015610LSM510083.871ENSNGAG00000017707-10083.871Nannospalax_galili
ENSHGLG00100015610LSM510096.703ENSNGAG00000024142Lsm510096.703Nannospalax_galili
ENSHGLG00100015610LSM57597.674ENSNBRG00000011386lsm59973.750Neolamprologus_brichardi
ENSHGLG00100015610LSM57286.047ENSNBRG00000009964LSM59682.222Neolamprologus_brichardi
ENSHGLG00100015610LSM510096.703ENSNLEG00000015268LSM510096.703Nomascus_leucogenys
ENSHGLG00100015610LSM584100.000ENSOPRG00000002443LSM5100100.000Ochotona_princeps
ENSHGLG00100015610LSM510096.703ENSODEG00000019072-10096.703Octodon_degus
ENSHGLG00100015610LSM510096.703ENSODEG00000008258-10096.703Octodon_degus
ENSHGLG00100015610LSM58159.722ENSOANG00000014540-9659.722Ornithorhynchus_anatinus
ENSHGLG00100015610LSM510096.703ENSOCUG00000029043LSM510096.703Oryctolagus_cuniculus
ENSHGLG00100015610LSM510090.110ENSORLG00000027725lsm55890.110Oryzias_latipes
ENSHGLG00100015610LSM59687.356ENSORLG00020003019lsm57896.000Oryzias_latipes_hni
ENSHGLG00100015610LSM510090.110ENSORLG00015003338lsm510090.110Oryzias_latipes_hsok
ENSHGLG00100015610LSM510089.011ENSOMEG00000001078lsm510089.011Oryzias_melastigma
ENSHGLG00100015610LSM510096.703ENSOGAG00000013892LSM510096.703Otolemur_garnettii
ENSHGLG00100015610LSM510096.703ENSOARG00000006944LSM510096.703Ovis_aries
ENSHGLG00100015610LSM510096.703ENSPPAG00000003697-10096.703Pan_paniscus
ENSHGLG00100015610LSM510096.703ENSPPRG00000002550LSM510096.703Panthera_pardus
ENSHGLG00100015610LSM510096.703ENSPTIG00000015604LSM510096.703Panthera_tigris_altaica
ENSHGLG00100015610LSM510096.703ENSPTRG00000019057LSM510096.703Pan_troglodytes
ENSHGLG00100015610LSM510080.220ENSPTRG00000049488-10082.418Pan_troglodytes
ENSHGLG00100015610LSM510093.407ENSPANG00000033477-10093.407Papio_anubis
ENSHGLG00100015610LSM59986.667ENSPANG00000032538-10086.667Papio_anubis
ENSHGLG00100015610LSM510096.703ENSPANG00000032179-10096.703Papio_anubis
ENSHGLG00100015610LSM510091.209ENSPKIG00000011910lsm510091.209Paramormyrops_kingsleyae
ENSHGLG00100015610LSM582100.000ENSPSIG00000014796LSM599100.000Pelodiscus_sinensis
ENSHGLG00100015610LSM57597.674ENSPMGG00000011699lsm510096.774Periophthalmus_magnuspinnatus
ENSHGLG00100015610LSM510089.831ENSPEMG00000019994-10089.831Peromyscus_maniculatus_bairdii
ENSHGLG00100015610LSM510070.330ENSPEMG00000022375-10070.330Peromyscus_maniculatus_bairdii
ENSHGLG00100015610LSM510091.209ENSPFOG00000001433lsm510091.209Poecilia_formosa
ENSHGLG00100015610LSM510091.209ENSPLAG00000009665lsm510091.209Poecilia_latipinna
ENSHGLG00100015610LSM510091.209ENSPMEG00000022265lsm510091.209Poecilia_mexicana
ENSHGLG00100015610LSM57597.674ENSPREG00000022452lsm510096.774Poecilia_reticulata
ENSHGLG00100015610LSM510093.407ENSPPYG00000017661LSM510093.407Pongo_abelii
ENSHGLG00100015610LSM58996.296ENSPCAG00000013740LSM510096.296Procavia_capensis
ENSHGLG00100015610LSM510096.703ENSPVAG00000009786LSM510096.703Pteropus_vampyrus
ENSHGLG00100015610LSM59691.954ENSPNYG00000022236lsm59991.954Pundamilia_nyererei
ENSHGLG00100015610LSM510090.110ENSPNAG00000001887lsm510090.110Pygocentrus_nattereri
ENSHGLG00100015610LSM510096.703ENSRNOG00000042126Lsm510096.703Rattus_norvegicus
ENSHGLG00100015610LSM510092.391ENSRNOG00000027305AABR07065089.110092.391Rattus_norvegicus
ENSHGLG00100015610LSM510096.703ENSRBIG00000030714-10096.703Rhinopithecus_bieti
ENSHGLG00100015610LSM510095.604ENSRBIG00000024431-10095.604Rhinopithecus_bieti
ENSHGLG00100015610LSM510096.703ENSRBIG00000027803-100100.000Rhinopithecus_bieti
ENSHGLG00100015610LSM510096.703ENSRBIG00000030340-10096.703Rhinopithecus_bieti
ENSHGLG00100015610LSM510096.703ENSRROG00000023884-10096.703Rhinopithecus_roxellana
ENSHGLG00100015610LSM510096.703ENSRROG00000004655-10096.703Rhinopithecus_roxellana
ENSHGLG00100015610LSM510096.703ENSRROG00000042782-100100.000Rhinopithecus_roxellana
ENSHGLG00100015610LSM58749.398YER146W-8949.398Saccharomyces_cerevisiae
ENSHGLG00100015610LSM510094.505ENSSBOG00000019124-10094.505Saimiri_boliviensis_boliviensis
ENSHGLG00100015610LSM510096.703ENSSBOG00000012312LSM510096.703Saimiri_boliviensis_boliviensis
ENSHGLG00100015610LSM510078.652ENSSBOG00000034794-10078.652Saimiri_boliviensis_boliviensis
ENSHGLG00100015610LSM510091.209ENSSFOG00015010099lsm510091.209Scleropages_formosus
ENSHGLG00100015610LSM510089.831ENSSMAG00000007895lsm510089.831Scophthalmus_maximus
ENSHGLG00100015610LSM57597.674ENSSDUG00000010762lsm510096.774Seriola_dumerili
ENSHGLG00100015610LSM58078.873ENSSLDG00000008014-8578.873Seriola_lalandi_dorsalis
ENSHGLG00100015610LSM510091.209ENSSLDG00000025242lsm510091.209Seriola_lalandi_dorsalis
ENSHGLG00100015610LSM57991.489ENSSARG00000003330LSM510068.132Sorex_araneus
ENSHGLG00100015610LSM510094.505ENSSPUG00000002690LSM510098.387Sphenodon_punctatus
ENSHGLG00100015610LSM510089.831ENSSPAG00000005435lsm510089.831Stegastes_partitus
ENSHGLG00100015610LSM510096.703ENSSSCG00000026064-10096.703Sus_scrofa
ENSHGLG00100015610LSM57985.106ENSSSCG00000029661-9684.058Sus_scrofa
ENSHGLG00100015610LSM510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSHGLG00100015610LSM58584.337ENSTRUG00000017749lsm56484.337Takifugu_rubripes
ENSHGLG00100015610LSM59691.954ENSTNIG00000008695lsm59991.954Tetraodon_nigroviridis
ENSHGLG00100015610LSM510096.703ENSTBEG00000004876LSM510096.703Tupaia_belangeri
ENSHGLG00100015610LSM510096.703ENSTTRG00000004237LSM510096.703Tursiops_truncatus
ENSHGLG00100015610LSM57993.617ENSUAMG00000009786LSM56193.617Ursus_americanus
ENSHGLG00100015610LSM510095.604ENSUMAG00000002625LSM56595.604Ursus_maritimus
ENSHGLG00100015610LSM510096.703ENSVPAG00000009985LSM510096.703Vicugna_pacos
ENSHGLG00100015610LSM510096.703ENSVVUG00000021311LSM510096.703Vulpes_vulpes
ENSHGLG00100015610LSM59091.463ENSXETG00000026465lsm510091.463Xenopus_tropicalis
ENSHGLG00100015610LSM57597.674ENSXCOG00000015348lsm510096.774Xiphophorus_couchianus
ENSHGLG00100015610LSM510091.209ENSXMAG00000029988lsm510091.209Xiphophorus_maculatus

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