EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHGLG00100015948 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Plus strand
Length: 36303 bases
Position: chrJH166592.1:491147-527449
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100021667	EST1	PF10374.9	1.3e-23	1	1
ENSHGLP00100021667	EST1_DNA_bind	PF10373.9	1.1e-39	1	2
ENSHGLP00100021667	EST1_DNA_bind	PF10373.9	1.1e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100021893	SMG5-201	2758	-	ENSHGLP00100021667	918 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100015948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100015948's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100015948	SMG5	99	93.319	ENSG00000198952	SMG5	90	93.100	Homo_sapiens
ENSHGLG00100015948	SMG5	99	67.541	ENSAPOG00000019690	smg5	89	67.358	Acanthochromis_polyacanthus
ENSHGLG00100015948	SMG5	97	90.513	ENSAMEG00000014458	SMG5	90	90.290	Ailuropoda_melanoleuca
ENSHGLG00100015948	SMG5	99	65.217	ENSACIG00000001353	smg5	90	66.844	Amphilophus_citrinellus
ENSHGLG00100015948	SMG5	97	66.336	ENSAOCG00000019483	smg5	86	66.446	Amphiprion_ocellaris
ENSHGLG00100015948	SMG5	97	66.152	ENSAPEG00000022949	smg5	88	65.827	Amphiprion_percula
ENSHGLG00100015948	SMG5	99	66.559	ENSATEG00000005348	smg5	90	67.061	Anabas_testudineus
ENSHGLG00100015948	SMG5	97	77.263	ENSAPLG00000010263	SMG5	90	77.047	Anas_platyrhynchos
ENSHGLG00100015948	SMG5	51	68.930	ENSACAG00000009162	-	93	71.903	Anolis_carolinensis
ENSHGLG00100015948	SMG5	99	92.990	ENSANAG00000032899	SMG5	90	92.771	Aotus_nancymaae
ENSHGLG00100015948	SMG5	99	64.718	ENSACLG00000009311	smg5	90	65.561	Astatotilapia_calliptera
ENSHGLG00100015948	SMG5	99	92.881	ENSBTAG00000009435	SMG5	90	92.662	Bos_taurus
ENSHGLG00100015948	SMG5	99	43.568	ENSBTAG00000021747	-	89	43.676	Bos_taurus
ENSHGLG00100015948	SMG5	99	92.990	ENSCJAG00000005684	SMG5	93	92.771	Callithrix_jacchus
ENSHGLG00100015948	SMG5	99	91.667	ENSCAFG00000016839	SMG5	90	91.118	Canis_familiaris
ENSHGLG00100015948	SMG5	99	91.667	ENSCAFG00020006061	SMG5	90	91.118	Canis_lupus_dingo
ENSHGLG00100015948	SMG5	99	92.552	ENSCHIG00000007709	SMG5	90	92.333	Capra_hircus
ENSHGLG00100015948	SMG5	99	43.952	ENSCHIG00000006323	-	90	43.784	Capra_hircus
ENSHGLG00100015948	SMG5	99	92.888	ENSTSYG00000004099	SMG5	90	92.670	Carlito_syrichta
ENSHGLG00100015948	SMG5	97	72.830	ENSCAPG00000003631	SMG5	90	73.984	Cavia_aperea
ENSHGLG00100015948	SMG5	99	94.189	ENSCPOG00000015696	SMG5	90	94.189	Cavia_porcellus
ENSHGLG00100015948	SMG5	99	93.428	ENSCCAG00000027409	SMG5	90	93.209	Cebus_capucinus
ENSHGLG00100015948	SMG5	99	93.319	ENSCATG00000030539	SMG5	90	93.100	Cercocebus_atys
ENSHGLG00100015948	SMG5	99	94.962	ENSCLAG00000003983	SMG5	90	94.962	Chinchilla_lanigera
ENSHGLG00100015948	SMG5	99	93.209	ENSCSAG00000002120	SMG5	90	92.990	Chlorocebus_sabaeus
ENSHGLG00100015948	SMG5	60	89.781	ENSCHOG00000008741	-	57	89.781	Choloepus_hoffmanni
ENSHGLG00100015948	SMG5	93	76.094	ENSCPBG00000025848	SMG5	90	76.570	Chrysemys_picta_bellii
ENSHGLG00100015948	SMG5	99	34.439	ENSCING00000008706	-	94	34.222	Ciona_intestinalis
ENSHGLG00100015948	SMG5	99	89.157	ENSCANG00000029208	SMG5	90	88.938	Colobus_angolensis_palliatus
ENSHGLG00100015948	SMG5	99	89.583	ENSCGRG00001006336	Smg5	90	89.583	Cricetulus_griseus_chok1gshd
ENSHGLG00100015948	SMG5	58	46.765	ENSCGRG00001000584	-	96	46.455	Cricetulus_griseus_chok1gshd
ENSHGLG00100015948	SMG5	97	89.497	ENSCGRG00000005111	Smg5	90	89.485	Cricetulus_griseus_crigri
ENSHGLG00100015948	SMG5	99	65.054	ENSCSEG00000014220	smg5	90	65.689	Cynoglossus_semilaevis
ENSHGLG00100015948	SMG5	99	59.848	ENSCVAG00000000529	smg5	89	60.432	Cyprinodon_variegatus
ENSHGLG00100015948	SMG5	99	87.842	ENSDNOG00000000051	SMG5	90	87.623	Dasypus_novemcinctus
ENSHGLG00100015948	SMG5	96	34.685	ENSDNOG00000039862	-	92	33.898	Dasypus_novemcinctus
ENSHGLG00100015948	SMG5	99	92.560	ENSDORG00000010382	Smg5	90	92.341	Dipodomys_ordii
ENSHGLG00100015948	SMG5	68	42.222	FBgn0019890	Smg5	60	34.127	Drosophila_melanogaster
ENSHGLG00100015948	SMG5	90	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSHGLG00100015948	SMG5	97	46.280	ENSEBUG00000003739	smg5	95	45.879	Eptatretus_burgeri
ENSHGLG00100015948	SMG5	99	92.990	ENSEASG00005019122	SMG5	90	92.771	Equus_asinus_asinus
ENSHGLG00100015948	SMG5	99	92.990	ENSECAG00000001389	SMG5	90	92.771	Equus_caballus
ENSHGLG00100015948	SMG5	69	95.965	ENSEEUG00000012690	SMG5	63	95.965	Erinaceus_europaeus
ENSHGLG00100015948	SMG5	99	65.171	ENSELUG00000012585	smg5	90	65.032	Esox_lucius
ENSHGLG00100015948	SMG5	99	91.667	ENSFCAG00000011783	SMG5	90	91.447	Felis_catus
ENSHGLG00100015948	SMG5	65	78.974	ENSFALG00000001166	-	99	78.738	Ficedula_albicollis
ENSHGLG00100015948	SMG5	97	94.743	ENSFDAG00000017388	SMG5	90	94.743	Fukomys_damarensis
ENSHGLG00100015948	SMG5	96	60.918	ENSFHEG00000013939	smg5	85	70.561	Fundulus_heteroclitus
ENSHGLG00100015948	SMG5	99	61.025	ENSGMOG00000007310	smg5	91	61.127	Gadus_morhua
ENSHGLG00100015948	SMG5	99	76.296	ENSGALG00000029918	-	90	75.499	Gallus_gallus
ENSHGLG00100015948	SMG5	92	74.715	ENSGAFG00000021691	smg5	86	70.093	Gambusia_affinis
ENSHGLG00100015948	SMG5	99	61.668	ENSGACG00000013142	smg5	91	61.829	Gasterosteus_aculeatus
ENSHGLG00100015948	SMG5	99	78.082	ENSGAGG00000016131	SMG5	90	78.059	Gopherus_agassizii
ENSHGLG00100015948	SMG5	99	93.209	ENSGGOG00000010932	SMG5	90	92.990	Gorilla_gorilla
ENSHGLG00100015948	SMG5	99	64.588	ENSHBUG00000008654	smg5	90	64.805	Haplochromis_burtoni
ENSHGLG00100015948	SMG5	99	99.890	ENSHGLG00000019152	SMG5	90	99.890	Heterocephalus_glaber_female
ENSHGLG00100015948	SMG5	82	72.771	ENSHCOG00000010229	smg5	79	72.289	Hippocampus_comes
ENSHGLG00100015948	SMG5	99	93.428	ENSSTOG00000001780	SMG5	90	93.209	Ictidomys_tridecemlineatus
ENSHGLG00100015948	SMG5	99	90.284	ENSJJAG00000022763	Smg5	90	89.760	Jaculus_jaculus
ENSHGLG00100015948	SMG5	99	67.351	ENSLBEG00000002145	smg5	89	67.171	Labrus_bergylta
ENSHGLG00100015948	SMG5	99	63.771	ENSLACG00000010521	SMG5	90	64.263	Latimeria_chalumnae
ENSHGLG00100015948	SMG5	94	78.998	ENSLOCG00000008380	smg5	98	62.309	Lepisosteus_oculatus
ENSHGLG00100015948	SMG5	99	92.223	ENSLAFG00000006241	SMG5	90	92.004	Loxodonta_africana
ENSHGLG00100015948	SMG5	99	93.319	ENSMFAG00000045357	SMG5	90	93.100	Macaca_fascicularis
ENSHGLG00100015948	SMG5	99	93.319	ENSMMUG00000000090	SMG5	90	93.100	Macaca_mulatta
ENSHGLG00100015948	SMG5	99	93.209	ENSMNEG00000044425	SMG5	90	92.990	Macaca_nemestrina
ENSHGLG00100015948	SMG5	99	86.260	ENSMLEG00000041192	SMG5	89	86.041	Mandrillus_leucophaeus
ENSHGLG00100015948	SMG5	99	61.002	ENSMAMG00000010683	smg5	91	61.868	Mastacembelus_armatus
ENSHGLG00100015948	SMG5	59	57.793	ENSMZEG00005016543	smg5	85	59.043	Maylandia_zebra
ENSHGLG00100015948	SMG5	99	65.016	ENSMZEG00005015815	smg5	91	65.675	Maylandia_zebra
ENSHGLG00100015948	SMG5	99	89.023	ENSMAUG00000010381	Smg5	89	89.133	Mesocricetus_auratus
ENSHGLG00100015948	SMG5	99	93.202	ENSMICG00000002257	SMG5	90	92.982	Microcebus_murinus
ENSHGLG00100015948	SMG5	99	89.180	ENSMOCG00000016590	Smg5	91	89.157	Microtus_ochrogaster
ENSHGLG00100015948	SMG5	99	57.806	ENSMMOG00000017199	smg5	91	59.230	Mola_mola
ENSHGLG00100015948	SMG5	91	34.185	ENSMODG00000004532	-	76	36.195	Monodelphis_domestica
ENSHGLG00100015948	SMG5	84	36.667	ENSMODG00000010675	-	73	36.786	Monodelphis_domestica
ENSHGLG00100015948	SMG5	97	33.843	ENSMODG00000004511	-	90	33.698	Monodelphis_domestica
ENSHGLG00100015948	SMG5	83	38.676	ENSMODG00000004735	-	75	38.790	Monodelphis_domestica
ENSHGLG00100015948	SMG5	96	87.882	ENSMODG00000016901	SMG5	98	87.656	Monodelphis_domestica
ENSHGLG00100015948	SMG5	99	59.256	ENSMALG00000010375	smg5	91	59.470	Monopterus_albus
ENSHGLG00100015948	SMG5	99	89.364	MGP_CAROLIEiJ_G0025163	Smg5	100	97.765	Mus_caroli
ENSHGLG00100015948	SMG5	99	89.803	ENSMUSG00000001415	Smg5	99	97.765	Mus_musculus
ENSHGLG00100015948	SMG5	99	89.583	MGP_PahariEiJ_G0026606	Smg5	100	97.765	Mus_pahari
ENSHGLG00100015948	SMG5	99	89.583	MGP_SPRETEiJ_G0026104	Smg5	100	97.765	Mus_spretus
ENSHGLG00100015948	SMG5	93	90.387	ENSMPUG00000004546	SMG5	90	89.215	Mustela_putorius_furo
ENSHGLG00100015948	SMG5	99	91.603	ENSMLUG00000008518	SMG5	90	91.603	Myotis_lucifugus
ENSHGLG00100015948	SMG5	99	90.889	ENSNGAG00000020706	Smg5	89	90.670	Nannospalax_galili
ENSHGLG00100015948	SMG5	98	43.159	ENSNGAG00000012101	-	88	43.604	Nannospalax_galili
ENSHGLG00100015948	SMG5	99	62.943	ENSNBRG00000004332	smg5	90	64.030	Neolamprologus_brichardi
ENSHGLG00100015948	SMG5	99	92.990	ENSNLEG00000012439	SMG5	90	92.771	Nomascus_leucogenys
ENSHGLG00100015948	SMG5	99	86.857	ENSMEUG00000012834	SMG5	90	85.214	Notamacropus_eugenii
ENSHGLG00100015948	SMG5	99	90.909	ENSOPRG00000009152	SMG5	90	90.690	Ochotona_princeps
ENSHGLG00100015948	SMG5	99	93.976	ENSODEG00000012237	SMG5	90	93.866	Octodon_degus
ENSHGLG00100015948	SMG5	99	40.615	ENSOCUG00000023338	-	98	40.066	Oryctolagus_cuniculus
ENSHGLG00100015948	SMG5	97	92.291	ENSOCUG00000012886	SMG5	90	92.067	Oryctolagus_cuniculus
ENSHGLG00100015948	SMG5	99	64.973	ENSORLG00020013127	smg5	90	65.761	Oryzias_latipes_hni
ENSHGLG00100015948	SMG5	99	64.649	ENSORLG00015019014	smg5	89	66.087	Oryzias_latipes_hsok
ENSHGLG00100015948	SMG5	90	59.439	ENSOMEG00000021330	smg5	92	59.247	Oryzias_melastigma
ENSHGLG00100015948	SMG5	99	92.215	ENSOGAG00000004966	SMG5	90	91.996	Otolemur_garnettii
ENSHGLG00100015948	SMG5	99	44.013	ENSOARG00000011963	-	89	43.844	Ovis_aries
ENSHGLG00100015948	SMG5	99	92.662	ENSOARG00000005778	SMG5	90	92.442	Ovis_aries
ENSHGLG00100015948	SMG5	99	93.100	ENSPPAG00000011996	SMG5	90	92.881	Pan_paniscus
ENSHGLG00100015948	SMG5	97	91.732	ENSPPRG00000011901	SMG5	90	91.173	Panthera_pardus
ENSHGLG00100015948	SMG5	97	85.794	ENSPTIG00000007892	SMG5	89	85.011	Panthera_tigris_altaica
ENSHGLG00100015948	SMG5	99	93.319	ENSPTRG00000049282	-	90	93.100	Pan_troglodytes
ENSHGLG00100015948	SMG5	99	93.319	ENSPTRG00000023925	SMG5	90	93.100	Pan_troglodytes
ENSHGLG00100015948	SMG5	99	93.319	ENSPANG00000011201	SMG5	90	93.100	Papio_anubis
ENSHGLG00100015948	SMG5	99	66.884	ENSPKIG00000009402	smg5	89	67.573	Paramormyrops_kingsleyae
ENSHGLG00100015948	SMG5	97	79.254	ENSPSIG00000015198	SMG5	90	78.781	Pelodiscus_sinensis
ENSHGLG00100015948	SMG5	99	60.345	ENSPMGG00000010465	smg5	90	60.203	Periophthalmus_magnuspinnatus
ENSHGLG00100015948	SMG5	99	89.912	ENSPEMG00000001819	Smg5	90	89.912	Peromyscus_maniculatus_bairdii
ENSHGLG00100015948	SMG5	98	50.213	ENSPMAG00000000410	smg5	90	49.947	Petromyzon_marinus
ENSHGLG00100015948	SMG5	99	88.074	ENSPCIG00000018938	SMG5	90	87.856	Phascolarctos_cinereus
ENSHGLG00100015948	SMG5	99	65.426	ENSPMEG00000014105	smg5	90	65.996	Poecilia_mexicana
ENSHGLG00100015948	SMG5	92	74.943	ENSPREG00000017713	smg5	91	61.713	Poecilia_reticulata
ENSHGLG00100015948	SMG5	99	93.428	ENSPPYG00000000723	SMG5	90	93.209	Pongo_abelii
ENSHGLG00100015948	SMG5	80	96.795	ENSPCAG00000008412	SMG5	78	96.795	Procavia_capensis
ENSHGLG00100015948	SMG5	99	93.202	ENSPCOG00000004741	SMG5	90	92.982	Propithecus_coquereli
ENSHGLG00100015948	SMG5	99	84.337	ENSPVAG00000016748	SMG5	90	84.228	Pteropus_vampyrus
ENSHGLG00100015948	SMG5	99	58.858	ENSPNYG00000013397	smg5	91	60.916	Pundamilia_nyererei
ENSHGLG00100015948	SMG5	99	62.274	ENSPNAG00000028363	smg5	91	63.147	Pygocentrus_nattereri
ENSHGLG00100015948	SMG5	99	90.121	ENSRNOG00000019590	Smg5	89	90.121	Rattus_norvegicus
ENSHGLG00100015948	SMG5	99	93.100	ENSRBIG00000027428	SMG5	90	92.881	Rhinopithecus_bieti
ENSHGLG00100015948	SMG5	99	92.990	ENSRROG00000030035	SMG5	90	92.771	Rhinopithecus_roxellana
ENSHGLG00100015948	SMG5	99	93.319	ENSSBOG00000033339	SMG5	90	93.100	Saimiri_boliviensis_boliviensis
ENSHGLG00100015948	SMG5	99	34.202	ENSSHAG00000009572	-	67	43.655	Sarcophilus_harrisii
ENSHGLG00100015948	SMG5	85	39.286	ENSSHAG00000000561	-	73	39.378	Sarcophilus_harrisii
ENSHGLG00100015948	SMG5	71	40.000	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSHGLG00100015948	SMG5	97	87.125	ENSSHAG00000014163	SMG5	90	86.903	Sarcophilus_harrisii
ENSHGLG00100015948	SMG5	99	66.702	ENSSFOG00015024175	smg5	89	66.738	Scleropages_formosus
ENSHGLG00100015948	SMG5	90	71.362	ENSSMAG00000013059	smg5	91	61.788	Scophthalmus_maximus
ENSHGLG00100015948	SMG5	90	75.991	ENSSDUG00000007122	smg5	91	61.441	Seriola_dumerili
ENSHGLG00100015948	SMG5	99	60.191	ENSSLDG00000011418	smg5	91	61.779	Seriola_lalandi_dorsalis
ENSHGLG00100015948	SMG5	99	80.592	ENSSARG00000012484	SMG5	99	80.263	Sorex_araneus
ENSHGLG00100015948	SMG5	93	76.014	ENSSPUG00000002260	SMG5	92	75.673	Sphenodon_punctatus
ENSHGLG00100015948	SMG5	91	76.224	ENSSPAG00000014266	smg5	88	66.738	Stegastes_partitus
ENSHGLG00100015948	SMG5	53	37.195	ENSSSCG00000037182	-	68	40.587	Sus_scrofa
ENSHGLG00100015948	SMG5	99	71.742	ENSSSCG00000039308	-	90	71.632	Sus_scrofa
ENSHGLG00100015948	SMG5	99	93.647	ENSSSCG00000006490	-	90	93.428	Sus_scrofa
ENSHGLG00100015948	SMG5	99	79.103	ENSTGUG00000003748	-	90	79.022	Taeniopygia_guttata
ENSHGLG00100015948	SMG5	99	64.984	ENSTRUG00000012580	smg5	89	64.309	Takifugu_rubripes
ENSHGLG00100015948	SMG5	99	65.264	ENSTNIG00000010303	smg5	90	65.011	Tetraodon_nigroviridis
ENSHGLG00100015948	SMG5	99	87.514	ENSTTRG00000001401	SMG5	90	87.295	Tursiops_truncatus
ENSHGLG00100015948	SMG5	99	91.347	ENSUAMG00000013721	SMG5	90	90.800	Ursus_americanus
ENSHGLG00100015948	SMG5	97	86.399	ENSUMAG00000018041	SMG5	87	85.746	Ursus_maritimus
ENSHGLG00100015948	SMG5	97	82.438	ENSVPAG00000009446	SMG5	90	82.215	Vicugna_pacos
ENSHGLG00100015948	SMG5	99	91.557	ENSVVUG00000005887	SMG5	90	91.009	Vulpes_vulpes
ENSHGLG00100015948	SMG5	74	67.733	ENSXETG00000033791	SMG5	86	67.394	Xenopus_tropicalis
ENSHGLG00100015948	SMG5	82	80.233	ENSXCOG00000004379	smg5	84	81.928	Xiphophorus_couchianus
ENSHGLG00100015948	SMG5	92	74.260	ENSXMAG00000013499	smg5	90	66.096	Xiphophorus_maculatus