EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHGLG00100018062 (Gene tree)
Gene ID: -
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Heterocephalus_glaber_male
Status: putative
Strand: Minus strand
Length: 10892 bases
Position: chrJH173151.1:917184-928075
Accession: 12651
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHGLP00100024596	tRNA-synt_1g	PF09334.11	5.8e-08	1	1
ENSHGLP00100024597	tRNA-synt_1g	PF09334.11	5.9e-08	1	1
ENSHGLP00100024596	Anticodon_1	PF08264.13	3.3e-31	1	1
ENSHGLP00100024597	Anticodon_1	PF08264.13	3.4e-31	1	1
ENSHGLP00100024596	tRNA-synt_1	PF00133.22	1.1e-172	1	2
ENSHGLP00100024596	tRNA-synt_1	PF00133.22	1.1e-172	2	2
ENSHGLP00100024597	tRNA-synt_1	PF00133.22	1.1e-172	1	2
ENSHGLP00100024597	tRNA-synt_1	PF00133.22	1.1e-172	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHGLT00100024850	VARS-202	3441	-	ENSHGLP00100024597	1147 (aa)	-	-
ENSHGLT00100024849	VARS-201	3432	-	ENSHGLP00100024596	1143 (aa)	-	-

Gene Model

Click here to download ENSHGLG00100018062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHGLG00100018062's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHGLG00100018062	VARS	88	45.741	ENSHGLG00100016535	VARS2	98	46.019

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHGLG00100018062	VARS	100	82.973	ENSG00000204394	VARS	99	88.502	Homo_sapiens
ENSHGLG00100018062	VARS	97	62.564	ENSAPOG00000020921	vars	92	62.436	Acanthochromis_polyacanthus
ENSHGLG00100018062	VARS	97	62.564	ENSAPOG00000020691	vars	92	62.436	Acanthochromis_polyacanthus
ENSHGLG00100018062	VARS	100	83.071	ENSAMEG00000006417	VARS	93	83.071	Ailuropoda_melanoleuca
ENSHGLG00100018062	VARS	99	61.699	ENSACIG00000013752	vars	93	61.948	Amphilophus_citrinellus
ENSHGLG00100018062	VARS	99	61.925	ENSAOCG00000002447	vars	93	61.841	Amphiprion_ocellaris
ENSHGLG00100018062	VARS	99	61.171	ENSAPEG00000010638	vars	92	61.171	Amphiprion_percula
ENSHGLG00100018062	VARS	99	60.348	ENSATEG00000020219	vars	94	60.770	Anabas_testudineus
ENSHGLG00100018062	VARS	89	65.293	ENSACAG00000029133	-	93	65.476	Anolis_carolinensis
ENSHGLG00100018062	VARS	100	82.973	ENSANAG00000015453	VARS	93	83.056	Aotus_nancymaae
ENSHGLG00100018062	VARS	99	60.855	ENSACLG00000025699	vars	90	60.934	Astatotilapia_calliptera
ENSHGLG00100018062	VARS	93	63.961	ENSAMXG00000017716	vars	88	64.139	Astyanax_mexicanus
ENSHGLG00100018062	VARS	100	82.973	ENSBTAG00000005631	VARS	93	83.056	Bos_taurus
ENSHGLG00100018062	VARS	100	82.890	ENSCJAG00000002604	VARS	93	82.973	Callithrix_jacchus
ENSHGLG00100018062	VARS	100	82.807	ENSCAFG00000000636	VARS	93	82.807	Canis_familiaris
ENSHGLG00100018062	VARS	93	83.096	ENSCAFG00020020790	VARS	89	83.096	Canis_lupus_dingo
ENSHGLG00100018062	VARS	97	87.546	ENSCHIG00000011008	VARS	93	83.306	Capra_hircus
ENSHGLG00100018062	VARS	100	83.389	ENSTSYG00000001567	VARS	93	83.472	Carlito_syrichta
ENSHGLG00100018062	VARS	98	82.218	ENSCAPG00000013736	VARS	99	82.218	Cavia_aperea
ENSHGLG00100018062	VARS	100	83.555	ENSCPOG00000000870	VARS	93	83.555	Cavia_porcellus
ENSHGLG00100018062	VARS	100	83.056	ENSCCAG00000035656	VARS	100	85.012	Cebus_capucinus
ENSHGLG00100018062	VARS	100	83.056	ENSCATG00000022394	VARS	100	82.176	Cercocebus_atys
ENSHGLG00100018062	VARS	96	83.106	ENSCLAG00000009470	VARS	95	83.106	Chinchilla_lanigera
ENSHGLG00100018062	VARS	100	83.056	ENSCSAG00000008784	VARS	93	83.140	Chlorocebus_sabaeus
ENSHGLG00100018062	VARS	86	65.828	ENSCPBG00000007943	VARS	96	67.668	Chrysemys_picta_bellii
ENSHGLG00100018062	VARS	100	83.223	ENSCANG00000033570	VARS	93	83.306	Colobus_angolensis_palliatus
ENSHGLG00100018062	VARS	100	82.641	ENSCGRG00001005686	Vars	93	82.641	Cricetulus_griseus_chok1gshd
ENSHGLG00100018062	VARS	99	77.851	ENSCGRG00000013352	Vars	78	77.851	Cricetulus_griseus_crigri
ENSHGLG00100018062	VARS	99	60.935	ENSCSEG00000019652	vars	93	60.935	Cynoglossus_semilaevis
ENSHGLG00100018062	VARS	99	61.375	ENSCVAG00000022398	vars	94	61.620	Cyprinodon_variegatus
ENSHGLG00100018062	VARS	99	61.399	ENSDARG00000044575	vars	93	61.646	Danio_rerio
ENSHGLG00100018062	VARS	88	82.523	ENSDORG00000016433	Vars	94	82.617	Dipodomys_ordii
ENSHGLG00100018062	VARS	67	84.746	ENSETEG00000003824	VARS	74	81.295	Echinops_telfairi
ENSHGLG00100018062	VARS	51	64.610	ENSEBUG00000007086	vars	84	63.605	Eptatretus_burgeri
ENSHGLG00100018062	VARS	61	55.777	ENSEBUG00000004637	vars	100	56.042	Eptatretus_burgeri
ENSHGLG00100018062	VARS	100	83.472	ENSEASG00005015673	VARS	93	83.555	Equus_asinus_asinus
ENSHGLG00100018062	VARS	100	83.237	ENSECAG00000014620	VARS	93	83.320	Equus_caballus
ENSHGLG00100018062	VARS	73	91.589	ENSEEUG00000004116	VARS	67	91.589	Erinaceus_europaeus
ENSHGLG00100018062	VARS	99	61.016	ENSELUG00000006550	vars	91	61.261	Esox_lucius
ENSHGLG00100018062	VARS	100	83.140	ENSFCAG00000004510	VARS	93	83.140	Felis_catus
ENSHGLG00100018062	VARS	85	86.885	ENSFDAG00000011401	VARS	100	86.885	Fukomys_damarensis
ENSHGLG00100018062	VARS	99	62.469	ENSFHEG00000010672	vars	94	62.106	Fundulus_heteroclitus
ENSHGLG00100018062	VARS	99	60.359	ENSGMOG00000014908	vars	97	60.439	Gadus_morhua
ENSHGLG00100018062	VARS	99	61.557	ENSGAFG00000021630	vars	94	61.916	Gambusia_affinis
ENSHGLG00100018062	VARS	99	60.623	ENSGACG00000009601	vars	98	60.391	Gasterosteus_aculeatus
ENSHGLG00100018062	VARS	100	82.973	ENSGGOG00000011364	VARS	93	83.056	Gorilla_gorilla
ENSHGLG00100018062	VARS	99	60.855	ENSHBUG00000017151	vars	90	60.934	Haplochromis_burtoni
ENSHGLG00100018062	VARS	100	91.681	ENSHGLG00000011646	VARS	93	91.681	Heterocephalus_glaber_female
ENSHGLG00100018062	VARS	99	60.982	ENSHCOG00000012198	vars	94	61.097	Hippocampus_comes
ENSHGLG00100018062	VARS	99	62.343	ENSIPUG00000005218	vars	93	62.427	Ictalurus_punctatus
ENSHGLG00100018062	VARS	100	84.149	ENSSTOG00000013112	VARS	93	84.149	Ictidomys_tridecemlineatus
ENSHGLG00100018062	VARS	100	68.132	ENSJJAG00000015343	-	96	67.249	Jaculus_jaculus
ENSHGLG00100018062	VARS	100	82.045	ENSJJAG00000019749	-	93	82.045	Jaculus_jaculus
ENSHGLG00100018062	VARS	99	61.250	ENSKMAG00000009455	vars	94	61.366	Kryptolebias_marmoratus
ENSHGLG00100018062	VARS	99	60.771	ENSLBEG00000010341	vars	93	61.577	Labrus_bergylta
ENSHGLG00100018062	VARS	93	58.537	ENSLACG00000015232	VARS	93	58.609	Latimeria_chalumnae
ENSHGLG00100018062	VARS	99	62.902	ENSLOCG00000004240	vars	94	62.902	Lepisosteus_oculatus
ENSHGLG00100018062	VARS	100	81.546	ENSLAFG00000023090	VARS	93	81.712	Loxodonta_africana
ENSHGLG00100018062	VARS	100	83.056	ENSMFAG00000001032	VARS	93	83.140	Macaca_fascicularis
ENSHGLG00100018062	VARS	100	83.056	ENSMMUG00000006828	VARS	93	83.140	Macaca_mulatta
ENSHGLG00100018062	VARS	100	83.223	ENSMNEG00000042072	VARS	93	83.306	Macaca_nemestrina
ENSHGLG00100018062	VARS	100	82.890	ENSMLEG00000039307	VARS	93	82.973	Mandrillus_leucophaeus
ENSHGLG00100018062	VARS	99	61.629	ENSMAMG00000003949	vars	93	61.629	Mastacembelus_armatus
ENSHGLG00100018062	VARS	99	61.713	ENSMZEG00005018327	vars	93	61.629	Maylandia_zebra
ENSHGLG00100018062	VARS	100	83.306	ENSMAUG00000006715	Vars	93	83.306	Mesocricetus_auratus
ENSHGLG00100018062	VARS	100	83.223	ENSMICG00000003548	VARS	100	85.714	Microcebus_murinus
ENSHGLG00100018062	VARS	100	80.299	ENSMOCG00000015404	Vars	93	80.565	Microtus_ochrogaster
ENSHGLG00100018062	VARS	99	62.207	ENSMMOG00000015801	vars	93	62.124	Mola_mola
ENSHGLG00100018062	VARS	99	77.444	ENSMODG00000015204	-	93	77.492	Monodelphis_domestica
ENSHGLG00100018062	VARS	99	61.977	ENSMALG00000022532	vars	93	61.977	Monopterus_albus
ENSHGLG00100018062	VARS	100	83.375	MGP_CAROLIEiJ_G0021491	Vars	93	83.541	Mus_caroli
ENSHGLG00100018062	VARS	100	83.458	ENSMUSG00000007029	Vars	93	83.624	Mus_musculus
ENSHGLG00100018062	VARS	100	83.042	MGP_PahariEiJ_G0020486	Vars	93	83.209	Mus_pahari
ENSHGLG00100018062	VARS	100	83.541	MGP_SPRETEiJ_G0022396	Vars	93	83.707	Mus_spretus
ENSHGLG00100018062	VARS	100	83.140	ENSMPUG00000010821	VARS	93	83.140	Mustela_putorius_furo
ENSHGLG00100018062	VARS	73	82.614	ENSMLUG00000013126	VARS	91	82.724	Myotis_lucifugus
ENSHGLG00100018062	VARS	100	83.375	ENSNGAG00000012151	Vars	93	83.458	Nannospalax_galili
ENSHGLG00100018062	VARS	99	61.538	ENSNBRG00000020520	vars	93	61.538	Neolamprologus_brichardi
ENSHGLG00100018062	VARS	100	82.641	ENSNLEG00000006351	VARS	100	80.320	Nomascus_leucogenys
ENSHGLG00100018062	VARS	94	81.890	ENSMEUG00000011378	VARS	93	74.564	Notamacropus_eugenii
ENSHGLG00100018062	VARS	100	83.306	ENSOPRG00000003607	VARS	93	83.306	Ochotona_princeps
ENSHGLG00100018062	VARS	99	84.255	ENSODEG00000017681	VARS	93	84.167	Octodon_degus
ENSHGLG00100018062	VARS	99	61.577	ENSONIG00000013064	vars	99	62.181	Oreochromis_niloticus
ENSHGLG00100018062	VARS	72	72.995	ENSOANG00000005400	VARS	92	72.995	Ornithorhynchus_anatinus
ENSHGLG00100018062	VARS	100	81.083	ENSOCUG00000022463	VARS	93	81.250	Oryctolagus_cuniculus
ENSHGLG00100018062	VARS	99	60.838	ENSORLG00000013063	vars	94	61.192	Oryzias_latipes
ENSHGLG00100018062	VARS	99	61.445	ENSORLG00020003504	vars	94	61.800	Oryzias_latipes_hni
ENSHGLG00100018062	VARS	99	61.345	ENSORLG00015009001	vars	94	61.619	Oryzias_latipes_hsok
ENSHGLG00100018062	VARS	99	61.332	ENSOMEG00000015016	vars	94	61.769	Oryzias_melastigma
ENSHGLG00100018062	VARS	100	82.309	ENSOGAG00000007515	VARS	93	82.392	Otolemur_garnettii
ENSHGLG00100018062	VARS	100	83.306	ENSPPAG00000034012	VARS	93	83.389	Pan_paniscus
ENSHGLG00100018062	VARS	100	83.056	ENSPPRG00000014855	VARS	93	83.056	Panthera_pardus
ENSHGLG00100018062	VARS	91	83.015	ENSPTIG00000010462	VARS	95	83.094	Panthera_tigris_altaica
ENSHGLG00100018062	VARS	100	83.223	ENSPTRG00000017985	VARS	93	83.306	Pan_troglodytes
ENSHGLG00100018062	VARS	100	80.327	ENSPANG00000014565	VARS	93	81.577	Papio_anubis
ENSHGLG00100018062	VARS	100	59.319	ENSPKIG00000016304	vars	95	59.319	Paramormyrops_kingsleyae
ENSHGLG00100018062	VARS	99	62.333	ENSPMGG00000023909	vars	94	62.333	Periophthalmus_magnuspinnatus
ENSHGLG00100018062	VARS	100	83.721	ENSPEMG00000006639	Vars	93	83.721	Peromyscus_maniculatus_bairdii
ENSHGLG00100018062	VARS	99	76.942	ENSPCIG00000018553	VARS	93	76.993	Phascolarctos_cinereus
ENSHGLG00100018062	VARS	99	61.721	ENSPFOG00000015690	vars	94	62.080	Poecilia_formosa
ENSHGLG00100018062	VARS	99	62.115	ENSPLAG00000009590	vars	94	62.080	Poecilia_latipinna
ENSHGLG00100018062	VARS	99	61.721	ENSPMEG00000004708	vars	94	62.080	Poecilia_mexicana
ENSHGLG00100018062	VARS	99	60.762	ENSPREG00000013264	vars	93	60.762	Poecilia_reticulata
ENSHGLG00100018062	VARS	100	81.229	ENSPPYG00000016460	VARS	93	81.312	Pongo_abelii
ENSHGLG00100018062	VARS	88	84.293	ENSPCAG00000013565	VARS	78	84.293	Procavia_capensis
ENSHGLG00100018062	VARS	100	83.320	ENSPCOG00000010942	VARS	93	83.402	Propithecus_coquereli
ENSHGLG00100018062	VARS	100	79.070	ENSPVAG00000012403	VARS	93	79.070	Pteropus_vampyrus
ENSHGLG00100018062	VARS	99	60.855	ENSPNYG00000022511	vars	93	60.934	Pundamilia_nyererei
ENSHGLG00100018062	VARS	99	61.905	ENSPNAG00000020962	vars	93	61.633	Pygocentrus_nattereri
ENSHGLG00100018062	VARS	100	83.472	ENSRNOG00000000867	Vars	93	83.472	Rattus_norvegicus
ENSHGLG00100018062	VARS	100	83.223	ENSRBIG00000041669	VARS	100	82.176	Rhinopithecus_bieti
ENSHGLG00100018062	VARS	100	83.223	ENSRROG00000045490	VARS	93	83.306	Rhinopithecus_roxellana
ENSHGLG00100018062	VARS	100	83.140	ENSSBOG00000035402	VARS	93	83.223	Saimiri_boliviensis_boliviensis
ENSHGLG00100018062	VARS	98	75.740	ENSSHAG00000006937	VARS	91	75.740	Sarcophilus_harrisii
ENSHGLG00100018062	VARS	99	60.618	ENSSFOG00015014272	vars	94	60.862	Scleropages_formosus
ENSHGLG00100018062	VARS	99	60.345	ENSSMAG00000009596	vars	93	60.377	Scophthalmus_maximus
ENSHGLG00100018062	VARS	99	60.357	ENSSDUG00000014177	vars	94	60.682	Seriola_dumerili
ENSHGLG00100018062	VARS	99	60.357	ENSSLDG00000025316	vars	94	60.682	Seriola_lalandi_dorsalis
ENSHGLG00100018062	VARS	99	62.269	ENSSPAG00000017068	vars	93	61.635	Stegastes_partitus
ENSHGLG00100018062	VARS	100	82.490	ENSSSCG00000038950	VARS	93	82.573	Sus_scrofa
ENSHGLG00100018062	VARS	78	63.433	ENSTRUG00000012307	vars	90	63.163	Takifugu_rubripes
ENSHGLG00100018062	VARS	99	61.175	ENSTNIG00000008011	vars	97	60.791	Tetraodon_nigroviridis
ENSHGLG00100018062	VARS	50	90.909	ENSTBEG00000004728	-	54	90.909	Tupaia_belangeri
ENSHGLG00100018062	VARS	100	76.412	ENSTTRG00000014128	VARS	93	76.412	Tursiops_truncatus
ENSHGLG00100018062	VARS	100	80.586	ENSUAMG00000010424	VARS	93	80.586	Ursus_americanus
ENSHGLG00100018062	VARS	100	80.796	ENSUMAG00000013486	VARS	93	81.126	Ursus_maritimus
ENSHGLG00100018062	VARS	100	83.167	ENSVVUG00000021323	VARS	93	83.167	Vulpes_vulpes
ENSHGLG00100018062	VARS	99	57.638	ENSXETG00000024076	vars	94	57.921	Xenopus_tropicalis
ENSHGLG00100018062	VARS	99	61.079	ENSXCOG00000019172	vars	93	61.245	Xiphophorus_couchianus
ENSHGLG00100018062	VARS	99	61.311	ENSXMAG00000010927	vars	94	61.671	Xiphophorus_maculatus