EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000000065 (Gene tree)
Gene ID: 108263593
Gene Symbol: rbfox1l
Alias: Fox-1|ZFmu1A11s|a2bp1l|hm:zeh0082|zeh0082
Full Name: RNA binding protein fox-1 homolog 1-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 11013 bases
Position: chr1:288285-299297
Accession: 108263593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000000047	Fox-1_C	PF12414.8	1.2e-32	1	1
ENSIPUP00000000046	Fox-1_C	PF12414.8	1.8e-32	1	1
ENSIPUP00000000045	Fox-1_C	PF12414.8	2e-32	1	1
ENSIPUP00000000046	RRM_1	PF00076.22	7.2e-18	1	1
ENSIPUP00000000047	RRM_1	PF00076.22	7.5e-18	1	1
ENSIPUP00000000045	RRM_1	PF00076.22	8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000000073	-	1397	XM_017464588	ENSIPUP00000000047	352 (aa)	XP_017320077	A0A2D0QNU8
ENSIPUT00000000072	-	1667	-	ENSIPUP00000000046	442 (aa)	-	-
ENSIPUT00000000071	-	1410	XM_017464578	ENSIPUP00000000045	469 (aa)	XP_017320067	-

Gene Model

Click here to download ENSIPUG00000000065's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000000065's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000000065	rbfox1l	69	70.204	ENSIPUG00000012010	rbfox3a	66	72.687
ENSIPUG00000000065	rbfox1l	88	48.563	ENSIPUG00000021966	rbfox3b	82	59.735
ENSIPUG00000000065	rbfox1l	64	69.469	ENSIPUG00000015215	rbfox1	74	63.910
ENSIPUG00000000065	rbfox1l	70	59.489	ENSIPUG00000016896	rbfox2	71	60.150

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000000065	rbfox1l	96	81.159	ENSAPOG00000016304	rbfox1l	100	81.201	Acanthochromis_polyacanthus
ENSIPUG00000000065	rbfox1l	99	75.284	ENSACIG00000006441	rbfox1l	99	73.670	Amphilophus_citrinellus
ENSIPUG00000000065	rbfox1l	95	78.006	ENSAOCG00000020938	rbfox1l	93	78.056	Amphiprion_ocellaris
ENSIPUG00000000065	rbfox1l	99	80.952	ENSAPEG00000008232	rbfox1l	99	80.577	Amphiprion_percula
ENSIPUG00000000065	rbfox1l	99	77.966	ENSATEG00000022649	rbfox1l	99	76.720	Anabas_testudineus
ENSIPUG00000000065	rbfox1l	74	70.896	ENSACAG00000011931	-	97	71.269	Anolis_carolinensis
ENSIPUG00000000065	rbfox1l	99	78.371	ENSACLG00000021394	rbfox1l	99	77.105	Astatotilapia_calliptera
ENSIPUG00000000065	rbfox1l	99	86.441	ENSAMXG00000010470	rbfox1l	99	85.185	Astyanax_mexicanus
ENSIPUG00000000065	rbfox1l	71	71.937	ENSCPBG00000010944	-	99	56.658	Chrysemys_picta_bellii
ENSIPUG00000000065	rbfox1l	99	79.944	ENSCSEG00000018898	rbfox1l	99	79.630	Cynoglossus_semilaevis
ENSIPUG00000000065	rbfox1l	99	81.232	ENSCVAG00000007986	rbfox1l	99	78.215	Cyprinodon_variegatus
ENSIPUG00000000065	rbfox1l	99	83.616	ENSDARG00000021184	rbfox1l	99	83.333	Danio_rerio
ENSIPUG00000000065	rbfox1l	99	75.616	ENSELUG00000015077	rbfox1l	99	77.692	Esox_lucius
ENSIPUG00000000065	rbfox1l	95	75.217	ENSFHEG00000016557	rbfox1l	86	87.805	Fundulus_heteroclitus
ENSIPUG00000000065	rbfox1l	99	79.096	ENSGMOG00000005040	rbfox1l	99	76.178	Gadus_morhua
ENSIPUG00000000065	rbfox1l	99	79.330	ENSGAFG00000013211	rbfox1l	97	78.492	Gambusia_affinis
ENSIPUG00000000065	rbfox1l	99	80.726	ENSGACG00000010757	rbfox1l	99	79.319	Gasterosteus_aculeatus
ENSIPUG00000000065	rbfox1l	71	71.146	ENSGAGG00000012440	-	84	74.486	Gopherus_agassizii
ENSIPUG00000000065	rbfox1l	99	78.371	ENSHBUG00000013406	rbfox1l	99	77.105	Haplochromis_burtoni
ENSIPUG00000000065	rbfox1l	99	78.492	ENSHCOG00000020771	rbfox1l	99	77.749	Hippocampus_comes
ENSIPUG00000000065	rbfox1l	99	79.109	ENSKMAG00000005146	rbfox1l	99	78.068	Kryptolebias_marmoratus
ENSIPUG00000000065	rbfox1l	99	80.168	ENSLBEG00000017089	rbfox1l	99	80.105	Labrus_bergylta
ENSIPUG00000000065	rbfox1l	99	78.212	ENSMAMG00000019480	rbfox1l	99	77.749	Mastacembelus_armatus
ENSIPUG00000000065	rbfox1l	99	78.371	ENSMZEG00005016374	rbfox1l	99	77.105	Maylandia_zebra
ENSIPUG00000000065	rbfox1l	99	79.379	ENSMMOG00000016530	rbfox1l	99	78.307	Mola_mola
ENSIPUG00000000065	rbfox1l	99	77.684	ENSMALG00000009384	rbfox1l	99	77.249	Monopterus_albus
ENSIPUG00000000065	rbfox1l	99	79.887	ENSNBRG00000003346	rbfox1l	99	78.515	Neolamprologus_brichardi
ENSIPUG00000000065	rbfox1l	99	79.213	ENSONIG00000012754	rbfox1l	99	77.895	Oreochromis_niloticus
ENSIPUG00000000065	rbfox1l	99	82.353	ENSORLG00000011269	rbfox1l	99	82.152	Oryzias_latipes
ENSIPUG00000000065	rbfox1l	99	82.073	ENSORLG00020000162	rbfox1l	99	81.890	Oryzias_latipes_hni
ENSIPUG00000000065	rbfox1l	99	82.073	ENSORLG00015013464	rbfox1l	99	81.890	Oryzias_latipes_hsok
ENSIPUG00000000065	rbfox1l	99	80.392	ENSOMEG00000010584	rbfox1l	99	80.577	Oryzias_melastigma
ENSIPUG00000000065	rbfox1l	99	84.463	ENSPKIG00000012029	rbfox1l	99	84.392	Paramormyrops_kingsleyae
ENSIPUG00000000065	rbfox1l	99	75.637	ENSPMGG00000012082	rbfox1l	99	76.127	Periophthalmus_magnuspinnatus
ENSIPUG00000000065	rbfox1l	99	79.888	ENSPFOG00000009338	rbfox1l	99	76.702	Poecilia_formosa
ENSIPUG00000000065	rbfox1l	92	72.508	ENSPLAG00000012816	rbfox1l	91	70.684	Poecilia_latipinna
ENSIPUG00000000065	rbfox1l	99	75.978	ENSPMEG00000017597	rbfox1l	99	71.990	Poecilia_mexicana
ENSIPUG00000000065	rbfox1l	99	75.978	ENSPREG00000007940	rbfox1l	99	72.513	Poecilia_reticulata
ENSIPUG00000000065	rbfox1l	99	78.371	ENSPNYG00000002098	rbfox1l	99	77.105	Pundamilia_nyererei
ENSIPUG00000000065	rbfox1l	99	88.732	ENSPNAG00000001620	rbfox1l	99	87.335	Pygocentrus_nattereri
ENSIPUG00000000065	rbfox1l	99	80.791	ENSSFOG00015000675	rbfox1l	99	80.952	Scleropages_formosus
ENSIPUG00000000065	rbfox1l	99	78.771	ENSSMAG00000013090	rbfox1l	99	78.534	Scophthalmus_maximus
ENSIPUG00000000065	rbfox1l	99	76.731	ENSSDUG00000008705	rbfox1l	99	77.083	Seriola_dumerili
ENSIPUG00000000065	rbfox1l	99	76.731	ENSSLDG00000022256	rbfox1l	99	77.083	Seriola_lalandi_dorsalis
ENSIPUG00000000065	rbfox1l	99	80.672	ENSSPAG00000016620	rbfox1l	99	80.315	Stegastes_partitus
ENSIPUG00000000065	rbfox1l	95	78.006	ENSTRUG00000015905	rbfox1l	100	78.108	Takifugu_rubripes
ENSIPUG00000000065	rbfox1l	70	79.478	ENSTNIG00000008088	rbfox1l	97	81.992	Tetraodon_nigroviridis
ENSIPUG00000000065	rbfox1l	99	78.771	ENSXMAG00000023471	rbfox1l	99	77.487	Xiphophorus_maculatus