EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000000167 (Gene tree)
Gene ID
108264228
Gene Symbol
cnot3
Alias
fb73b06|fc17h07|wu:fb73b06|wu:fc17h07|zgc:92813
Full Name
CCR4-NOT transcription complex subunit 3
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
10089 bases
Position
chr1:2539717-2549805
Accession
108264228
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000000204Not3PF04065.151e-9511
ENSIPUP00000000200Not3PF04065.151.3e-9511
ENSIPUP00000000202Not3PF04065.151.4e-9511
ENSIPUP00000000204NOT2_3_5PF04153.183e-3811
ENSIPUP00000000200NOT2_3_5PF04153.183.8e-3811
ENSIPUP00000000202NOT2_3_5PF04153.186.7e-2811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000000230-2862-ENSIPUP00000000202869 (aa)--
ENSIPUT00000000228-2855XM_017465564ENSIPUP00000000200860 (aa)XP_017321053A0A2D0QRG6
ENSIPUT00000000232-2220-ENSIPUP00000000204739 (aa)--
Gene Model
Click here to download ENSIPUG00000000167's gene model file
Pathways
Pathway IDPathway NameSource
ipu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000000167's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000000167cnot310060.730ENSIPUG00000009046cnot3b10059.166
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000000167cnot37292.308ENSG00000088038CNOT310094.330Homo_sapiens
ENSIPUG00000000167cnot36279.545ENSAPOG00000015002cnot3b7582.909Acanthochromis_polyacanthus
ENSIPUG00000000167cnot36294.894ENSAPOG00000015499CNOT39794.894Acanthochromis_polyacanthus
ENSIPUG00000000167cnot37184.516ENSAMEG00000004528CNOT39882.450Ailuropoda_melanoleuca
ENSIPUG00000000167cnot36691.964ENSACIG00000003652cnot3b9991.964Amphilophus_citrinellus
ENSIPUG00000000167cnot310066.270ENSACIG00000006635cnot3a9994.872Amphilophus_citrinellus
ENSIPUG00000000167cnot36094.872ENSAOCG00000023769cnot3a9866.742Amphiprion_ocellaris
ENSIPUG00000000167cnot39680.645ENSAOCG00000018385-9976.555Amphiprion_ocellaris
ENSIPUG00000000167cnot39680.645ENSAPEG00000002640cnot3b9993.333Amphiprion_percula
ENSIPUG00000000167cnot36194.872ENSAPEG00000006624cnot3a10068.197Amphiprion_percula
ENSIPUG00000000167cnot38586.364ENSATEG00000022737cnot3a10067.752Anabas_testudineus
ENSIPUG00000000167cnot310062.539ENSATEG00000015777cnot3b10062.967Anabas_testudineus
ENSIPUG00000000167cnot37485.479ENSACAG00000016085CNOT39782.450Anolis_carolinensis
ENSIPUG00000000167cnot38392.308ENSANAG00000025756CNOT38992.308Aotus_nancymaae
ENSIPUG00000000167cnot310067.422ENSACLG00000021136cnot3a10067.573Astatotilapia_calliptera
ENSIPUG00000000167cnot310063.470ENSACLG00000016702cnot3b8677.778Astatotilapia_calliptera
ENSIPUG00000000167cnot310082.041ENSAMXG00000012359cnot3a10074.179Astyanax_mexicanus
ENSIPUG00000000167cnot38682.703ENSAMXG00000009447cnot3b9882.703Astyanax_mexicanus
ENSIPUG00000000167cnot37392.308ENSBTAG00000014900CNOT39882.119Bos_taurus
ENSIPUG00000000167cnot35454.938WBGene00003826ntl-38254.938Caenorhabditis_elegans
ENSIPUG00000000167cnot37184.194ENSCJAG00000001094CNOT39982.119Callithrix_jacchus
ENSIPUG00000000167cnot36584.194ENSCAFG00000002699CNOT39882.119Canis_familiaris
ENSIPUG00000000167cnot36584.194ENSCAFG00020018359CNOT39882.119Canis_lupus_dingo
ENSIPUG00000000167cnot37389.700ENSCHIG00000015302CNOT39880.066Capra_hircus
ENSIPUG00000000167cnot37692.308ENSTSYG00000008058CNOT39982.119Carlito_syrichta
ENSIPUG00000000167cnot37184.194ENSCAPG00000009533CNOT39982.119Cavia_aperea
ENSIPUG00000000167cnot37184.194ENSCPOG00000020741CNOT39982.119Cavia_porcellus
ENSIPUG00000000167cnot38392.308ENSCCAG00000036290CNOT39982.119Cebus_capucinus
ENSIPUG00000000167cnot37292.308ENSCATG00000030324CNOT39982.119Cercocebus_atys
ENSIPUG00000000167cnot37184.194ENSCLAG00000003302CNOT310085.366Chinchilla_lanigera
ENSIPUG00000000167cnot37292.308ENSCSAG00000001900CNOT39982.119Chlorocebus_sabaeus
ENSIPUG00000000167cnot37285.479ENSCPBG00000011655CNOT310082.450Chrysemys_picta_bellii
ENSIPUG00000000167cnot38268.670ENSCING00000000293-8868.670Ciona_intestinalis
ENSIPUG00000000167cnot37292.308ENSCANG00000013408CNOT39982.119Colobus_angolensis_palliatus
ENSIPUG00000000167cnot36392.735ENSCGRG00001000855Cnot39982.450Cricetulus_griseus_chok1gshd
ENSIPUG00000000167cnot35667.442ENSCGRG00000012929Cnot38165.116Cricetulus_griseus_crigri
ENSIPUG00000000167cnot37687.200ENSCSEG00000016892cnot3b7090.558Cynoglossus_semilaevis
ENSIPUG00000000167cnot310066.381ENSCSEG00000003574cnot3a10066.416Cynoglossus_semilaevis
ENSIPUG00000000167cnot310061.790ENSCVAG00000022122cnot3b8775.000Cyprinodon_variegatus
ENSIPUG00000000167cnot310066.302ENSCVAG00000008168cnot3a9295.299Cyprinodon_variegatus
ENSIPUG00000000167cnot39492.308ENSDARG00000019842cnot3b10061.878Danio_rerio
ENSIPUG00000000167cnot310080.328ENSDARG00000007135cnot3a10072.113Danio_rerio
ENSIPUG00000000167cnot37183.871ENSDNOG00000045972CNOT39981.788Dasypus_novemcinctus
ENSIPUG00000000167cnot37392.308ENSDORG00000008021Cnot39982.119Dipodomys_ordii
ENSIPUG00000000167cnot354100.000ENSETEG00000006305CNOT363100.000Echinops_telfairi
ENSIPUG00000000167cnot37067.434ENSEBUG00000010437cnot3a7166.997Eptatretus_burgeri
ENSIPUG00000000167cnot37292.308ENSEASG00005021591CNOT39982.119Equus_asinus_asinus
ENSIPUG00000000167cnot37292.308ENSECAG00000023181CNOT39982.119Equus_caballus
ENSIPUG00000000167cnot310062.699ENSELUG00000000953cnot3b8977.828Esox_lucius
ENSIPUG00000000167cnot39392.766ENSELUG00000014743cnot3a7691.489Esox_lucius
ENSIPUG00000000167cnot37184.194ENSFCAG00000014042CNOT39982.119Felis_catus
ENSIPUG00000000167cnot310060.403ENSFHEG00000001696cnot3b8674.194Fundulus_heteroclitus
ENSIPUG00000000167cnot310066.777ENSFHEG00000023166cnot3a9995.299Fundulus_heteroclitus
ENSIPUG00000000167cnot39463.751ENSGMOG00000005365cnot3a8578.313Gadus_morhua
ENSIPUG00000000167cnot310061.946ENSGAFG00000003459cnot3b8675.000Gambusia_affinis
ENSIPUG00000000167cnot36294.872ENSGAFG00000013094cnot3a10066.594Gambusia_affinis
ENSIPUG00000000167cnot39363.006ENSGACG00000011489cnot3a9863.468Gasterosteus_aculeatus
ENSIPUG00000000167cnot37287.008ENSGAGG00000012677CNOT39987.008Gopherus_agassizii
ENSIPUG00000000167cnot37292.308ENSGGOG00000012996CNOT38992.308Gorilla_gorilla
ENSIPUG00000000167cnot310067.422ENSHBUG00000005275cnot3a10067.682Haplochromis_burtoni
ENSIPUG00000000167cnot39976.959ENSHBUG00000019699cnot3b8977.778Haplochromis_burtoni
ENSIPUG00000000167cnot37292.308ENSHGLG00000008821CNOT39982.119Heterocephalus_glaber_female
ENSIPUG00000000167cnot37283.077ENSHGLG00100006181CNOT39883.142Heterocephalus_glaber_male
ENSIPUG00000000167cnot38682.727ENSHCOG00000020968cnot3a9785.520Hippocampus_comes
ENSIPUG00000000167cnot37692.308ENSSTOG00000028248CNOT39982.119Ictidomys_tridecemlineatus
ENSIPUG00000000167cnot36484.516ENSJJAG00000014594Cnot39982.450Jaculus_jaculus
ENSIPUG00000000167cnot39577.157ENSKMAG00000004863cnot3a10078.392Kryptolebias_marmoratus
ENSIPUG00000000167cnot310062.999ENSKMAG00000018723cnot3b10063.186Kryptolebias_marmoratus
ENSIPUG00000000167cnot39660.650ENSLBEG00000018278cnot3b9961.030Labrus_bergylta
ENSIPUG00000000167cnot36194.017ENSLBEG00000017296cnot3a9394.017Labrus_bergylta
ENSIPUG00000000167cnot37184.818ENSLACG00000009742CNOT39881.788Latimeria_chalumnae
ENSIPUG00000000167cnot35494.444ENSLOCG00000000005cnot3b9694.444Lepisosteus_oculatus
ENSIPUG00000000167cnot37183.601ENSLAFG00000022133CNOT39881.518Loxodonta_africana
ENSIPUG00000000167cnot37292.308ENSMFAG00000040073CNOT39982.119Macaca_fascicularis
ENSIPUG00000000167cnot37391.213ENSMMUG00000009698CNOT39594.845Macaca_mulatta
ENSIPUG00000000167cnot37292.308ENSMNEG00000036750CNOT39982.119Macaca_nemestrina
ENSIPUG00000000167cnot37292.308ENSMLEG00000036579CNOT39982.119Mandrillus_leucophaeus
ENSIPUG00000000167cnot39982.870ENSMAMG00000019397cnot3a10066.089Mastacembelus_armatus
ENSIPUG00000000167cnot310062.619ENSMAMG00000019357cnot3b10063.376Mastacembelus_armatus
ENSIPUG00000000167cnot310067.422ENSMZEG00005016304cnot3a10067.573Maylandia_zebra
ENSIPUG00000000167cnot310063.735ENSMZEG00005002466cnot3b10063.961Maylandia_zebra
ENSIPUG00000000167cnot37192.735ENSMAUG00000014996Cnot39982.450Mesocricetus_auratus
ENSIPUG00000000167cnot36683.228ENSMICG00000002370CNOT39782.119Microcebus_murinus
ENSIPUG00000000167cnot310081.702ENSMMOG00000016446cnot3a9389.744Mola_mola
ENSIPUG00000000167cnot37190.598ENSMMOG00000013086cnot3b9990.598Mola_mola
ENSIPUG00000000167cnot36285.149ENSMODG00000004066CNOT39982.119Monodelphis_domestica
ENSIPUG00000000167cnot37489.035ENSMALG00000004936cnot3b9579.392Monopterus_albus
ENSIPUG00000000167cnot36993.590ENSMALG00000009204cnot3a8884.793Monopterus_albus
ENSIPUG00000000167cnot37184.516MGP_CAROLIEiJ_G0029095Cnot310097.000Mus_caroli
ENSIPUG00000000167cnot37184.516ENSMUSG00000035632Cnot310097.000Mus_musculus
ENSIPUG00000000167cnot37184.516MGP_PahariEiJ_G0020964Cnot310097.000Mus_pahari
ENSIPUG00000000167cnot37184.516MGP_SPRETEiJ_G0030148Cnot310097.000Mus_spretus
ENSIPUG00000000167cnot36584.194ENSMPUG00000010352CNOT310082.119Mustela_putorius_furo
ENSIPUG00000000167cnot36392.308ENSNGAG00000013266Cnot39982.119Nannospalax_galili
ENSIPUG00000000167cnot37189.381ENSNBRG00000003336cnot3b9889.381Neolamprologus_brichardi
ENSIPUG00000000167cnot36392.308ENSNLEG00000006272CNOT38992.308Nomascus_leucogenys
ENSIPUG00000000167cnot350100.000ENSOPRG00000001605-62100.000Ochotona_princeps
ENSIPUG00000000167cnot37184.194ENSODEG00000000705CNOT310088.608Octodon_degus
ENSIPUG00000000167cnot310064.662ENSONIG00000007047cnot3b10064.471Oreochromis_niloticus
ENSIPUG00000000167cnot310067.785ENSONIG00000006568cnot3a10067.609Oreochromis_niloticus
ENSIPUG00000000167cnot37184.194ENSOCUG00000007691CNOT39982.119Oryctolagus_cuniculus
ENSIPUG00000000167cnot36294.444ENSORLG00000011174cnot3a10067.434Oryzias_latipes
ENSIPUG00000000167cnot39660.923ENSORLG00000005982cnot3b8677.880Oryzias_latipes
ENSIPUG00000000167cnot36294.444ENSORLG00020008009cnot3a10066.124Oryzias_latipes_hni
ENSIPUG00000000167cnot310064.074ENSORLG00020005779cnot3b8777.880Oryzias_latipes_hni
ENSIPUG00000000167cnot36294.444ENSORLG00015013729cnot3a10067.069Oryzias_latipes_hsok
ENSIPUG00000000167cnot310063.290ENSORLG00015019021cnot3b10064.100Oryzias_latipes_hsok
ENSIPUG00000000167cnot37594.444ENSOMEG00000010309cnot3a9094.444Oryzias_melastigma
ENSIPUG00000000167cnot39978.802ENSOMEG00000015557cnot3b8777.419Oryzias_melastigma
ENSIPUG00000000167cnot36392.308ENSOGAG00000006945CNOT39982.119Otolemur_garnettii
ENSIPUG00000000167cnot37292.308ENSPPAG00000002748CNOT38992.308Pan_paniscus
ENSIPUG00000000167cnot37184.194ENSPPRG00000011705CNOT39982.119Panthera_pardus
ENSIPUG00000000167cnot38969.617ENSPTIG00000008781CNOT39682.215Panthera_tigris_altaica
ENSIPUG00000000167cnot37292.308ENSPTRG00000011444CNOT38992.308Pan_troglodytes
ENSIPUG00000000167cnot37292.308ENSPTRG00000046717-8992.308Pan_troglodytes
ENSIPUG00000000167cnot37292.308ENSPANG00000009375CNOT39982.119Papio_anubis
ENSIPUG00000000167cnot38677.436ENSPKIG00000015967-9993.590Paramormyrops_kingsleyae
ENSIPUG00000000167cnot310060.786ENSPKIG00000011733CNOT38580.734Paramormyrops_kingsleyae
ENSIPUG00000000167cnot39173.853ENSPMGG00000022539cnot3b9956.933Periophthalmus_magnuspinnatus
ENSIPUG00000000167cnot37192.735ENSPEMG00000024185Cnot39982.450Peromyscus_maniculatus_bairdii
ENSIPUG00000000167cnot37191.880ENSPCIG00000023018CNOT39391.880Phascolarctos_cinereus
ENSIPUG00000000167cnot310062.378ENSPFOG00000007168cnot3b10060.965Poecilia_formosa
ENSIPUG00000000167cnot37888.000ENSPFOG00000008693cnot3a10084.667Poecilia_formosa
ENSIPUG00000000167cnot310062.378ENSPLAG00000013457cnot3b10060.965Poecilia_latipinna
ENSIPUG00000000167cnot310065.978ENSPLAG00000013324cnot3a10066.375Poecilia_latipinna
ENSIPUG00000000167cnot36294.872ENSPMEG00000017718cnot3a10066.083Poecilia_mexicana
ENSIPUG00000000167cnot310063.468ENSPMEG00000010184cnot3b10061.075Poecilia_mexicana
ENSIPUG00000000167cnot37194.468ENSPREG00000007592cnot3a9994.444Poecilia_reticulata
ENSIPUG00000000167cnot39858.518ENSPREG00000000662cnot3b8775.576Poecilia_reticulata
ENSIPUG00000000167cnot37291.880ENSPPYG00000010372CNOT39981.788Pongo_abelii
ENSIPUG00000000167cnot37292.308ENSPCOG00000017673CNOT38892.308Propithecus_coquereli
ENSIPUG00000000167cnot37183.871ENSPVAG00000015564CNOT39881.788Pteropus_vampyrus
ENSIPUG00000000167cnot39972.222ENSPNYG00000003358cnot3b9959.389Pundamilia_nyererei
ENSIPUG00000000167cnot310067.314ENSPNYG00000002282cnot3a10067.573Pundamilia_nyererei
ENSIPUG00000000167cnot39392.735ENSPNAG00000027459cnot3b10061.481Pygocentrus_nattereri
ENSIPUG00000000167cnot310083.333ENSPNAG00000017679cnot3a10074.540Pygocentrus_nattereri
ENSIPUG00000000167cnot37184.516ENSRNOG00000053234Cnot39982.450Rattus_norvegicus
ENSIPUG00000000167cnot37184.194ENSRBIG00000031025CNOT39092.308Rhinopithecus_bieti
ENSIPUG00000000167cnot37184.194ENSRROG00000003872CNOT39982.119Rhinopithecus_roxellana
ENSIPUG00000000167cnot37592.308ENSSBOG00000030268CNOT38992.308Saimiri_boliviensis_boliviensis
ENSIPUG00000000167cnot310064.466ENSSFOG00015019203-10063.146Scleropages_formosus
ENSIPUG00000000167cnot310079.556ENSSFOG00015000248cnot310065.338Scleropages_formosus
ENSIPUG00000000167cnot36195.726ENSSMAG00000013235cnot3a10066.275Scophthalmus_maximus
ENSIPUG00000000167cnot310062.314ENSSMAG00000016031cnot3b10061.637Scophthalmus_maximus
ENSIPUG00000000167cnot310062.566ENSSDUG00000003428cnot3b8779.630Seriola_dumerili
ENSIPUG00000000167cnot37195.299ENSSDUG00000008181cnot3a10092.593Seriola_dumerili
ENSIPUG00000000167cnot310062.461ENSSLDG00000014376cnot3b8779.630Seriola_lalandi_dorsalis
ENSIPUG00000000167cnot35795.299ENSSLDG00000014733cnot3a9966.554Seriola_lalandi_dorsalis
ENSIPUG00000000167cnot39868.523ENSSPUG00000008510CNOT310059.918Sphenodon_punctatus
ENSIPUG00000000167cnot310063.839ENSSPAG00000001429cnot3b10064.530Stegastes_partitus
ENSIPUG00000000167cnot38491.700ENSSPAG00000003858cnot3a8791.700Stegastes_partitus
ENSIPUG00000000167cnot37184.194ENSSSCG00000003264CNOT39982.119Sus_scrofa
ENSIPUG00000000167cnot310068.197ENSTRUG00000015732cnot3a10067.144Takifugu_rubripes
ENSIPUG00000000167cnot39980.645ENSTRUG00000007248cnot3b8985.455Takifugu_rubripes
ENSIPUG00000000167cnot39459.170ENSTNIG00000005663cnot3b10057.798Tetraodon_nigroviridis
ENSIPUG00000000167cnot39464.931ENSTNIG00000008082cnot3a8893.590Tetraodon_nigroviridis
ENSIPUG00000000167cnot36584.516ENSUAMG00000005234CNOT39882.450Ursus_americanus
ENSIPUG00000000167cnot36392.735ENSUMAG00000010934CNOT39692.735Ursus_maritimus
ENSIPUG00000000167cnot37184.194ENSVVUG00000008239CNOT39882.119Vulpes_vulpes
ENSIPUG00000000167cnot310055.714ENSXETG00000003166cnot39879.153Xenopus_tropicalis
ENSIPUG00000000167cnot39657.859ENSXCOG00000018976cnot3b9958.458Xiphophorus_couchianus
ENSIPUG00000000167cnot37881.661ENSXCOG00000019460cnot3a9994.872Xiphophorus_couchianus
ENSIPUG00000000167cnot310064.744ENSXMAG00000012273cnot3a10065.752Xiphophorus_maculatus
ENSIPUG00000000167cnot310062.311ENSXMAG00000014176cnot3b10060.523Xiphophorus_maculatus

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