EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000000242 (Gene tree)
Gene ID: 108265971
Gene Symbol: smarcad1a
Alias: smarcad1|wu:fi25c01|zgc:113183
Full Name: SWI/SNF-related%2C matrix-associated actin-dependent regulator of chromatin%2C subfamily a%2C containing DEAD/H box 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 16376 bases
Position: chr5:18819440-18835815
Accession: 108265971
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000000300	ResIII	PF04851.15	8.8e-08	1	1
ENSIPUP00000000305	ResIII	PF04851.15	9e-08	1	1
ENSIPUP00000000297	ResIII	PF04851.15	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000000335	-	3316	-	ENSIPUP00000000300	976 (aa)	-	-
ENSIPUT00000000340	-	3340	-	ENSIPUP00000000305	984 (aa)	-	-
ENSIPUT00000000332	-	3126	XM_017468872	ENSIPUP00000000297	1041 (aa)	XP_017324361	-

Gene Model

Click here to download ENSIPUG00000000242's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000000242's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000000242	smarcad1a	78	70.245	ENSIPUG00000022817	smarcad1b	77	70.736
ENSIPUG00000000242	smarcad1a	51	35.645	ENSIPUG00000002634	HELLS	62	35.067
ENSIPUG00000000242	smarcad1a	50	32.108	ENSIPUG00000018531	rad54b	51	32.087

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000000242	smarcad1a	60	65.825	ENSG00000163104	SMARCAD1	99	65.825	Homo_sapiens
ENSIPUG00000000242	smarcad1a	98	61.702	ENSAPOG00000011446	smarcad1a	99	58.170	Acanthochromis_polyacanthus
ENSIPUG00000000242	smarcad1a	72	60.948	ENSAMEG00000005844	SMARCAD1	62	65.415	Ailuropoda_melanoleuca
ENSIPUG00000000242	smarcad1a	67	73.820	ENSACIG00000018326	smarcad1a	89	73.416	Amphilophus_citrinellus
ENSIPUG00000000242	smarcad1a	96	62.062	ENSAOCG00000019762	smarcad1a	99	57.689	Amphiprion_ocellaris
ENSIPUG00000000242	smarcad1a	96	62.719	ENSAPEG00000003889	smarcad1a	99	57.689	Amphiprion_percula
ENSIPUG00000000242	smarcad1a	95	61.698	ENSATEG00000015608	smarcad1a	95	61.031	Anabas_testudineus
ENSIPUG00000000242	smarcad1a	95	52.345	ENSAPLG00000004630	SMARCAD1	90	60.354	Anas_platyrhynchos
ENSIPUG00000000242	smarcad1a	82	62.239	ENSACAG00000013554	SMARCAD1	77	63.281	Anolis_carolinensis
ENSIPUG00000000242	smarcad1a	93	63.542	ENSANAG00000020488	SMARCAD1	88	65.258	Aotus_nancymaae
ENSIPUG00000000242	smarcad1a	96	60.911	ENSACLG00000017063	smarcad1a	99	57.007	Astatotilapia_calliptera
ENSIPUG00000000242	smarcad1a	72	81.188	ENSAMXG00000015470	smarcad1a	99	78.911	Astyanax_mexicanus
ENSIPUG00000000242	smarcad1a	89	59.080	ENSAMXG00000019130	smarcad1b	81	72.300	Astyanax_mexicanus
ENSIPUG00000000242	smarcad1a	93	60.333	ENSBTAG00000017061	SMARCAD1	78	64.743	Bos_taurus
ENSIPUG00000000242	smarcad1a	65	41.223	WBGene00010845	M03C11.8	64	41.149	Caenorhabditis_elegans
ENSIPUG00000000242	smarcad1a	90	63.393	ENSCJAG00000006778	SMARCAD1	76	65.102	Callithrix_jacchus
ENSIPUG00000000242	smarcad1a	97	60.809	ENSCAFG00000010026	SMARCAD1	78	65.258	Canis_familiaris
ENSIPUG00000000242	smarcad1a	95	52.555	ENSCAFG00020003994	SMARCAD1	90	65.258	Canis_lupus_dingo
ENSIPUG00000000242	smarcad1a	93	60.640	ENSCHIG00000012905	SMARCAD1	78	65.102	Capra_hircus
ENSIPUG00000000242	smarcad1a	94	60.342	ENSTSYG00000002706	SMARCAD1	78	64.945	Carlito_syrichta
ENSIPUG00000000242	smarcad1a	81	54.627	ENSCAPG00000016744	SMARCAD1	68	57.005	Cavia_aperea
ENSIPUG00000000242	smarcad1a	63	62.481	ENSCPOG00000011398	SMARCAD1	60	65.217	Cavia_porcellus
ENSIPUG00000000242	smarcad1a	93	63.393	ENSCCAG00000022264	SMARCAD1	99	65.825	Cebus_capucinus
ENSIPUG00000000242	smarcad1a	95	52.341	ENSCATG00000035663	SMARCAD1	88	65.102	Cercocebus_atys
ENSIPUG00000000242	smarcad1a	93	51.983	ENSCSAG00000004186	SMARCAD1	89	65.102	Chlorocebus_sabaeus
ENSIPUG00000000242	smarcad1a	95	53.446	ENSCPBG00000013203	SMARCAD1	62	65.312	Chrysemys_picta_bellii
ENSIPUG00000000242	smarcad1a	66	48.407	ENSCING00000001688	-	96	48.910	Ciona_intestinalis
ENSIPUG00000000242	smarcad1a	68	63.393	ENSCANG00000003556	SMARCAD1	99	65.825	Colobus_angolensis_palliatus
ENSIPUG00000000242	smarcad1a	94	59.490	ENSCGRG00001015056	Smarcad1	79	64.476	Cricetulus_griseus_chok1gshd
ENSIPUG00000000242	smarcad1a	94	59.490	ENSCGRG00000014087	Smarcad1	79	64.476	Cricetulus_griseus_crigri
ENSIPUG00000000242	smarcad1a	96	56.956	ENSCSEG00000017903	smarcad1a	99	53.967	Cynoglossus_semilaevis
ENSIPUG00000000242	smarcad1a	96	58.393	ENSCSEG00000014419	-	70	66.667	Cynoglossus_semilaevis
ENSIPUG00000000242	smarcad1a	79	71.032	ENSDARG00000073721	smarcad1b	88	72.419	Danio_rerio
ENSIPUG00000000242	smarcad1a	98	52.130	ENSDNOG00000000806	-	62	65.415	Dasypus_novemcinctus
ENSIPUG00000000242	smarcad1a	90	63.111	ENSDORG00000012331	Smarcad1	76	64.945	Dipodomys_ordii
ENSIPUG00000000242	smarcad1a	65	44.359	FBgn0032157	Etl1	83	43.343	Drosophila_melanogaster
ENSIPUG00000000242	smarcad1a	65	44.410	ENSEBUG00000003969	smarcad1a	91	46.429	Eptatretus_burgeri
ENSIPUG00000000242	smarcad1a	95	60.918	ENSEASG00005012382	SMARCAD1	76	65.415	Equus_asinus_asinus
ENSIPUG00000000242	smarcad1a	95	60.918	ENSECAG00000011562	SMARCAD1	76	65.415	Equus_caballus
ENSIPUG00000000242	smarcad1a	86	57.683	ENSELUG00000019154	smarcad1b	78	65.390	Esox_lucius
ENSIPUG00000000242	smarcad1a	95	63.636	ENSELUG00000018535	smarcad1a	99	58.286	Esox_lucius
ENSIPUG00000000242	smarcad1a	95	52.868	ENSFCAG00000003958	SMARCAD1	99	66.162	Felis_catus
ENSIPUG00000000242	smarcad1a	93	59.753	ENSFALG00000006089	SMARCAD1	91	64.623	Ficedula_albicollis
ENSIPUG00000000242	smarcad1a	68	63.111	ENSFDAG00000017027	SMARCAD1	62	65.102	Fukomys_damarensis
ENSIPUG00000000242	smarcad1a	67	73.071	ENSFHEG00000012778	smarcad1a	66	69.028	Fundulus_heteroclitus
ENSIPUG00000000242	smarcad1a	81	72.054	ENSGMOG00000018995	smarcad1a	88	74.097	Gadus_morhua
ENSIPUG00000000242	smarcad1a	87	57.337	ENSGALG00000037339	SMARCAD1	94	57.065	Gallus_gallus
ENSIPUG00000000242	smarcad1a	95	59.601	ENSGAFG00000013498	smarcad1a	60	74.522	Gambusia_affinis
ENSIPUG00000000242	smarcad1a	85	73.141	ENSGACG00000007327	smarcad1a	98	67.394	Gasterosteus_aculeatus
ENSIPUG00000000242	smarcad1a	94	52.665	ENSGAGG00000008582	SMARCAD1	62	65.156	Gopherus_agassizii
ENSIPUG00000000242	smarcad1a	93	63.393	ENSGGOG00000023001	SMARCAD1	78	65.102	Gorilla_gorilla
ENSIPUG00000000242	smarcad1a	96	59.854	ENSHBUG00000011042	smarcad1a	99	55.929	Haplochromis_burtoni
ENSIPUG00000000242	smarcad1a	92	63.111	ENSHGLG00000005070	SMARCAD1	77	65.102	Heterocephalus_glaber_female
ENSIPUG00000000242	smarcad1a	92	63.111	ENSHGLG00100006812	SMARCAD1	77	65.102	Heterocephalus_glaber_male
ENSIPUG00000000242	smarcad1a	98	53.321	ENSHCOG00000007848	smarcad1a	93	63.310	Hippocampus_comes
ENSIPUG00000000242	smarcad1a	68	63.095	ENSSTOG00000001227	SMARCAD1	62	64.789	Ictidomys_tridecemlineatus
ENSIPUG00000000242	smarcad1a	95	60.278	ENSJJAG00000022342	Smarcad1	76	64.789	Jaculus_jaculus
ENSIPUG00000000242	smarcad1a	99	56.719	ENSKMAG00000021351	smarcad1a	99	56.799	Kryptolebias_marmoratus
ENSIPUG00000000242	smarcad1a	96	60.537	ENSLBEG00000008088	smarcad1a	99	57.169	Labrus_bergylta
ENSIPUG00000000242	smarcad1a	82	71.565	ENSLOCG00000012909	smarcad1a	72	65.969	Lepisosteus_oculatus
ENSIPUG00000000242	smarcad1a	73	59.388	ENSLAFG00000000040	SMARCAD1	62	63.693	Loxodonta_africana
ENSIPUG00000000242	smarcad1a	95	52.341	ENSMFAG00000042606	SMARCAD1	87	65.102	Macaca_fascicularis
ENSIPUG00000000242	smarcad1a	95	52.341	ENSMMUG00000022242	SMARCAD1	87	65.102	Macaca_mulatta
ENSIPUG00000000242	smarcad1a	68	63.393	ENSMNEG00000038117	SMARCAD1	99	65.825	Macaca_nemestrina
ENSIPUG00000000242	smarcad1a	93	63.393	ENSMLEG00000038333	SMARCAD1	99	65.825	Mandrillus_leucophaeus
ENSIPUG00000000242	smarcad1a	96	60.581	ENSMAMG00000000933	smarcad1a	99	56.876	Mastacembelus_armatus
ENSIPUG00000000242	smarcad1a	96	60.911	ENSMZEG00005005203	smarcad1a	99	57.007	Maylandia_zebra
ENSIPUG00000000242	smarcad1a	60	65.436	ENSMGAG00000005577	SMARCAD1	62	65.436	Meleagris_gallopavo
ENSIPUG00000000242	smarcad1a	96	59.744	ENSMAUG00000008417	Smarcad1	90	64.734	Mesocricetus_auratus
ENSIPUG00000000242	smarcad1a	96	60.615	ENSMICG00000009746	SMARCAD1	78	64.848	Microcebus_murinus
ENSIPUG00000000242	smarcad1a	97	59.780	ENSMOCG00000017142	Smarcad1	79	64.789	Microtus_ochrogaster
ENSIPUG00000000242	smarcad1a	76	71.006	ENSMMOG00000000275	smarcad1a	99	67.872	Mola_mola
ENSIPUG00000000242	smarcad1a	95	51.974	ENSMODG00000019268	SMARCAD1	75	64.789	Monodelphis_domestica
ENSIPUG00000000242	smarcad1a	90	60.333	MGP_CAROLIEiJ_G0028458	-	60	64.945	Mus_caroli
ENSIPUG00000000242	smarcad1a	95	60.194	ENSMUSG00000029920	Smarcad1	78	64.945	Mus_musculus
ENSIPUG00000000242	smarcad1a	95	51.554	MGP_PahariEiJ_G0022198	Smarcad1	78	64.945	Mus_pahari
ENSIPUG00000000242	smarcad1a	92	60.194	MGP_SPRETEiJ_G0029462	Smarcad1	76	65.210	Mus_spretus
ENSIPUG00000000242	smarcad1a	72	60.948	ENSMPUG00000002111	SMARCAD1	62	65.415	Mustela_putorius_furo
ENSIPUG00000000242	smarcad1a	93	63.775	ENSMLUG00000000425	SMARCAD1	78	65.523	Myotis_lucifugus
ENSIPUG00000000242	smarcad1a	96	60.057	ENSNGAG00000000810	Smarcad1	97	59.914	Nannospalax_galili
ENSIPUG00000000242	smarcad1a	66	74.224	ENSNBRG00000012749	smarcad1a	84	68.006	Neolamprologus_brichardi
ENSIPUG00000000242	smarcad1a	93	63.393	ENSNLEG00000014225	SMARCAD1	99	65.825	Nomascus_leucogenys
ENSIPUG00000000242	smarcad1a	93	63.111	ENSODEG00000004334	SMARCAD1	78	65.102	Octodon_degus
ENSIPUG00000000242	smarcad1a	82	75.243	ENSONIG00000015059	smarcad1a	92	73.006	Oreochromis_niloticus
ENSIPUG00000000242	smarcad1a	78	65.091	ENSOANG00000013764	SMARCAD1	88	65.679	Ornithorhynchus_anatinus
ENSIPUG00000000242	smarcad1a	95	60.779	ENSOCUG00000017283	SMARCAD1	76	65.102	Oryctolagus_cuniculus
ENSIPUG00000000242	smarcad1a	97	58.722	ENSORLG00000004869	smarcad1a	98	55.816	Oryzias_latipes
ENSIPUG00000000242	smarcad1a	97	58.824	ENSORLG00020020569	smarcad1a	98	56.667	Oryzias_latipes_hni
ENSIPUG00000000242	smarcad1a	97	58.800	ENSORLG00015009045	smarcad1a	98	56.788	Oryzias_latipes_hsok
ENSIPUG00000000242	smarcad1a	97	59.407	ENSOMEG00000023032	smarcad1a	98	56.910	Oryzias_melastigma
ENSIPUG00000000242	smarcad1a	95	59.778	ENSOGAG00000011444	SMARCAD1	76	64.275	Otolemur_garnettii
ENSIPUG00000000242	smarcad1a	93	60.640	ENSOARG00000017851	SMARCAD1	78	65.102	Ovis_aries
ENSIPUG00000000242	smarcad1a	93	63.393	ENSPPAG00000035715	SMARCAD1	78	65.102	Pan_paniscus
ENSIPUG00000000242	smarcad1a	95	52.868	ENSPPRG00000024756	SMARCAD1	99	66.162	Panthera_pardus
ENSIPUG00000000242	smarcad1a	95	52.758	ENSPTIG00000017868	SMARCAD1	62	65.211	Panthera_tigris_altaica
ENSIPUG00000000242	smarcad1a	93	63.393	ENSPTRG00000023126	SMARCAD1	99	65.825	Pan_troglodytes
ENSIPUG00000000242	smarcad1a	93	62.074	ENSPANG00000019757	SMARCAD1	78	63.707	Papio_anubis
ENSIPUG00000000242	smarcad1a	75	59.675	ENSPSIG00000010255	SMARCAD1	62	65.156	Pelodiscus_sinensis
ENSIPUG00000000242	smarcad1a	65	69.388	ENSPMGG00000010735	smarcad1a	96	66.129	Periophthalmus_magnuspinnatus
ENSIPUG00000000242	smarcad1a	94	52.479	ENSPEMG00000001854	Smarcad1	90	56.149	Peromyscus_maniculatus_bairdii
ENSIPUG00000000242	smarcad1a	97	46.652	ENSPMAG00000003516	smarcad1a	98	51.847	Petromyzon_marinus
ENSIPUG00000000242	smarcad1a	87	60.494	ENSPCIG00000008137	SMARCAD1	95	60.028	Phascolarctos_cinereus
ENSIPUG00000000242	smarcad1a	95	61.082	ENSPREG00000018185	smarcad1a	98	56.695	Poecilia_reticulata
ENSIPUG00000000242	smarcad1a	90	62.908	ENSPPYG00000014935	SMARCAD1	76	64.587	Pongo_abelii
ENSIPUG00000000242	smarcad1a	61	58.043	ENSPCOG00000020478	SMARCAD1	62	63.289	Propithecus_coquereli
ENSIPUG00000000242	smarcad1a	90	63.189	ENSPVAG00000001760	SMARCAD1	77	64.839	Pteropus_vampyrus
ENSIPUG00000000242	smarcad1a	69	70.667	ENSPNYG00000010087	smarcad1a	82	69.297	Pundamilia_nyererei
ENSIPUG00000000242	smarcad1a	98	77.173	ENSPNAG00000001663	smarcad1a	98	75.246	Pygocentrus_nattereri
ENSIPUG00000000242	smarcad1a	89	58.094	ENSPNAG00000010099	smarcad1b	77	70.579	Pygocentrus_nattereri
ENSIPUG00000000242	smarcad1a	92	60.333	ENSRNOG00000006391	Smarcad1	76	65.102	Rattus_norvegicus
ENSIPUG00000000242	smarcad1a	93	63.393	ENSRBIG00000041989	SMARCAD1	78	65.102	Rhinopithecus_bieti
ENSIPUG00000000242	smarcad1a	93	63.393	ENSRROG00000035309	SMARCAD1	78	65.102	Rhinopithecus_roxellana
ENSIPUG00000000242	smarcad1a	56	42.314	YAL019W	-	51	41.897	Saccharomyces_cerevisiae
ENSIPUG00000000242	smarcad1a	93	63.393	ENSSBOG00000032114	SMARCAD1	99	65.825	Saimiri_boliviensis_boliviensis
ENSIPUG00000000242	smarcad1a	95	60.357	ENSSHAG00000001279	SMARCAD1	75	65.102	Sarcophilus_harrisii
ENSIPUG00000000242	smarcad1a	74	67.857	ENSSFOG00015020909	smarcad1a	95	67.582	Scleropages_formosus
ENSIPUG00000000242	smarcad1a	95	61.383	ENSSFOG00015016814	smarcad1b	99	56.072	Scleropages_formosus
ENSIPUG00000000242	smarcad1a	95	60.164	ENSSMAG00000001326	smarcad1a	99	56.372	Scophthalmus_maximus
ENSIPUG00000000242	smarcad1a	70	71.346	ENSSDUG00000022338	smarcad1a	85	68.552	Seriola_dumerili
ENSIPUG00000000242	smarcad1a	96	58.866	ENSSLDG00000024986	smarcad1a	99	55.659	Seriola_lalandi_dorsalis
ENSIPUG00000000242	smarcad1a	60	65.714	ENSSPUG00000004633	SMARCAD1	99	65.714	Sphenodon_punctatus
ENSIPUG00000000242	smarcad1a	96	60.659	ENSSPAG00000001970	smarcad1a	99	57.049	Stegastes_partitus
ENSIPUG00000000242	smarcad1a	92	60.918	ENSSSCG00000009193	SMARCAD1	89	65.415	Sus_scrofa
ENSIPUG00000000242	smarcad1a	87	54.930	ENSTGUG00000003127	SMARCAD1	97	60.779	Taeniopygia_guttata
ENSIPUG00000000242	smarcad1a	96	60.170	ENSTNIG00000017585	smarcad1a	97	67.168	Tetraodon_nigroviridis
ENSIPUG00000000242	smarcad1a	71	68.056	ENSTBEG00000002789	SMARCAD1	66	68.056	Tupaia_belangeri
ENSIPUG00000000242	smarcad1a	73	60.556	ENSTTRG00000000226	SMARCAD1	64	65.000	Tursiops_truncatus
ENSIPUG00000000242	smarcad1a	72	60.948	ENSUAMG00000022262	SMARCAD1	67	65.534	Ursus_americanus
ENSIPUG00000000242	smarcad1a	72	60.948	ENSUMAG00000004549	SMARCAD1	62	65.415	Ursus_maritimus
ENSIPUG00000000242	smarcad1a	98	51.923	ENSVVUG00000007271	SMARCAD1	89	65.258	Vulpes_vulpes
ENSIPUG00000000242	smarcad1a	95	48.589	ENSXETG00000019214	smarcad1	100	47.858	Xenopus_tropicalis
ENSIPUG00000000242	smarcad1a	82	68.895	ENSXCOG00000005232	smarcad1a	83	67.949	Xiphophorus_couchianus