EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000000698 (Gene tree)
Gene ID: 108271114
Gene Symbol: cirbpb
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold-inducible RNA-binding protein B-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5869 bases
Position: chr10:17034305-17040173
Accession: 108271114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000000967	RRM_1	PF00076.22	1.4e-26	1	1
ENSIPUP00000000979	RRM_1	PF00076.22	1.4e-26	1	1
ENSIPUP00000000972	RRM_1	PF00076.22	2.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000001028	-	846	XM_017478402	ENSIPUP00000000967	200 (aa)	XP_017333891	A0A2D0RUN5
ENSIPUT00000001040	-	1432	XM_017478403	ENSIPUP00000000979	203 (aa)	XP_017333892	A0A2D0RTR6
ENSIPUT00000001032	-	1469	-	ENSIPUP00000000972	259 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000000698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000000698's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000000698	cirbpb	100	53.695	ENSIPUG00000007089	RBM3	100	50.242
ENSIPUG00000000698	cirbpb	86	46.753	ENSIPUG00000021097	msi2a	56	42.529

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000000698	cirbpb	100	75.362	ENSAMXG00000015612	cirbpb	57	68.462	Astyanax_mexicanus
ENSIPUG00000000698	cirbpb	100	61.576	ENSDARG00000103672	cirbpa	100	60.591	Danio_rerio
ENSIPUG00000000698	cirbpb	72	50.000	ENSELUG00000004675	-	80	60.494	Esox_lucius
ENSIPUG00000000698	cirbpb	100	58.209	ENSFHEG00000002580	cirbpa	50	78.313	Fundulus_heteroclitus
ENSIPUG00000000698	cirbpb	60	65.289	ENSLBEG00000027731	-	67	74.699	Labrus_bergylta
ENSIPUG00000000698	cirbpb	100	56.098	ENSLBEG00000000292	cirbpa	52	71.084	Labrus_bergylta
ENSIPUG00000000698	cirbpb	100	76.555	ENSPNAG00000019997	cirbpb	100	77.670	Pygocentrus_nattereri
ENSIPUG00000000698	cirbpb	100	53.670	ENSSMAG00000002412	cirbpa	100	56.863	Scophthalmus_maximus
ENSIPUG00000000698	cirbpb	100	53.234	ENSSDUG00000016099	cirbpa	77	76.056	Seriola_dumerili
ENSIPUG00000000698	cirbpb	100	52.500	ENSSPAG00000023037	cirbpa	51	78.313	Stegastes_partitus
ENSIPUG00000000698	cirbpb	100	59.113	ENSTRUG00000010187	cirbpa	61	79.518	Takifugu_rubripes
ENSIPUG00000000698	cirbpb	100	58.706	ENSXCOG00000008262	cirbpa	92	73.973	Xiphophorus_couchianus