EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000000818 (Gene tree)
Gene ID: -
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 46600 bases
Position: chr2:25836669-25883268
Accession: 108278609
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000001180	RRM_1	PF00076.22	0.00016	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000001248	-	5316	XM_017492062	ENSIPUP00000001180	1771 (aa)	XP_017347551	-

Gene Model

Click here to download ENSIPUG00000000818's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000000818's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000000818	tnrc6c1	90	55.494	ENSIPUG00000022767	tnrc6c2	100	54.395
ENSIPUG00000000818	tnrc6c1	66	35.494	ENSIPUG00000001515	tnrc6b	60	35.830

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000000818	tnrc6c1	98	51.555	ENSG00000078687	TNRC6C	100	65.517	Homo_sapiens
ENSIPUG00000000818	tnrc6c1	99	61.412	ENSAPOG00000019749	tnrc6c1	99	63.404	Acanthochromis_polyacanthus
ENSIPUG00000000818	tnrc6c1	94	50.680	ENSAMEG00000013756	TNRC6C	99	50.889	Ailuropoda_melanoleuca
ENSIPUG00000000818	tnrc6c1	67	62.470	ENSACIG00000008075	tnrc6c1	99	57.199	Amphilophus_citrinellus
ENSIPUG00000000818	tnrc6c1	93	76.369	ENSAOCG00000023968	tnrc6c1	99	63.384	Amphiprion_ocellaris
ENSIPUG00000000818	tnrc6c1	94	61.556	ENSAPEG00000009020	tnrc6c1	99	63.441	Amphiprion_percula
ENSIPUG00000000818	tnrc6c1	98	51.828	ENSAPLG00000005456	TNRC6C	99	51.233	Anas_platyrhynchos
ENSIPUG00000000818	tnrc6c1	98	52.828	ENSACAG00000016198	TNRC6C	99	51.450	Anolis_carolinensis
ENSIPUG00000000818	tnrc6c1	98	51.911	ENSANAG00000021554	TNRC6C	99	50.814	Aotus_nancymaae
ENSIPUG00000000818	tnrc6c1	94	58.787	ENSACLG00000000424	tnrc6c1	99	58.502	Astatotilapia_calliptera
ENSIPUG00000000818	tnrc6c1	98	50.554	ENSBTAG00000018658	TNRC6C	99	51.185	Bos_taurus
ENSIPUG00000000818	tnrc6c1	98	51.456	ENSCJAG00000019431	TNRC6C	99	50.541	Callithrix_jacchus
ENSIPUG00000000818	tnrc6c1	98	51.567	ENSCAFG00000005224	TNRC6C	99	51.685	Canis_familiaris
ENSIPUG00000000818	tnrc6c1	98	52.361	ENSCAFG00020006661	TNRC6C	99	51.992	Canis_lupus_dingo
ENSIPUG00000000818	tnrc6c1	98	52.037	ENSCHIG00000026004	TNRC6C	98	52.422	Capra_hircus
ENSIPUG00000000818	tnrc6c1	89	53.070	ENSTSYG00000005403	TNRC6C	100	52.551	Carlito_syrichta
ENSIPUG00000000818	tnrc6c1	91	55.896	ENSCAPG00000007307	TNRC6C	98	48.756	Cavia_aperea
ENSIPUG00000000818	tnrc6c1	98	51.404	ENSCCAG00000030524	TNRC6C	99	50.516	Cebus_capucinus
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSCATG00000033135	TNRC6C	99	50.910	Cercocebus_atys
ENSIPUG00000000818	tnrc6c1	98	53.062	ENSCLAG00000011139	TNRC6C	99	52.472	Chinchilla_lanigera
ENSIPUG00000000818	tnrc6c1	98	51.813	ENSCSAG00000005167	TNRC6C	99	51.111	Chlorocebus_sabaeus
ENSIPUG00000000818	tnrc6c1	64	69.626	ENSCHOG00000000088	TNRC6C	69	69.572	Choloepus_hoffmanni
ENSIPUG00000000818	tnrc6c1	93	53.788	ENSCPBG00000027960	TNRC6C	99	53.734	Chrysemys_picta_bellii
ENSIPUG00000000818	tnrc6c1	98	51.555	ENSCANG00000041771	TNRC6C	99	50.910	Colobus_angolensis_palliatus
ENSIPUG00000000818	tnrc6c1	98	52.136	ENSCGRG00001022686	Tnrc6c	100	51.984	Cricetulus_griseus_chok1gshd
ENSIPUG00000000818	tnrc6c1	98	52.351	ENSCGRG00000018041	Tnrc6c	100	51.984	Cricetulus_griseus_crigri
ENSIPUG00000000818	tnrc6c1	98	59.328	ENSCSEG00000012744	tnrc6c1	100	59.483	Cynoglossus_semilaevis
ENSIPUG00000000818	tnrc6c1	99	75.931	ENSDARG00000076847	tnrc6c1	99	75.927	Danio_rerio
ENSIPUG00000000818	tnrc6c1	98	51.164	ENSDNOG00000003247	TNRC6C	99	51.022	Dasypus_novemcinctus
ENSIPUG00000000818	tnrc6c1	98	50.358	ENSDORG00000004558	Tnrc6c	99	49.696	Dipodomys_ordii
ENSIPUG00000000818	tnrc6c1	80	59.444	ENSETEG00000005527	TNRC6C	83	58.804	Echinops_telfairi
ENSIPUG00000000818	tnrc6c1	87	54.286	ENSEASG00005004799	TNRC6C	94	54.583	Equus_asinus_asinus
ENSIPUG00000000818	tnrc6c1	98	52.542	ENSECAG00000012486	TNRC6C	99	52.196	Equus_caballus
ENSIPUG00000000818	tnrc6c1	88	60.654	ENSEEUG00000010008	TNRC6C	96	59.947	Erinaceus_europaeus
ENSIPUG00000000818	tnrc6c1	72	60.491	ENSFCAG00000028358	TNRC6C	99	50.887	Felis_catus
ENSIPUG00000000818	tnrc6c1	89	51.888	ENSFALG00000000848	TNRC6C	100	51.561	Ficedula_albicollis
ENSIPUG00000000818	tnrc6c1	92	53.191	ENSFDAG00000010368	TNRC6C	99	53.246	Fukomys_damarensis
ENSIPUG00000000818	tnrc6c1	99	59.454	ENSFHEG00000002936	tnrc6c1	99	59.347	Fundulus_heteroclitus
ENSIPUG00000000818	tnrc6c1	94	52.584	ENSGALG00000001725	TNRC6C	100	54.377	Gallus_gallus
ENSIPUG00000000818	tnrc6c1	99	59.672	ENSGAFG00000019019	tnrc6c1	100	61.470	Gambusia_affinis
ENSIPUG00000000818	tnrc6c1	99	58.333	ENSGACG00000012320	tnrc6c1	99	59.488	Gasterosteus_aculeatus
ENSIPUG00000000818	tnrc6c1	93	53.904	ENSGAGG00000022043	TNRC6C	99	53.581	Gopherus_agassizii
ENSIPUG00000000818	tnrc6c1	98	51.553	ENSGGOG00000011304	TNRC6C	99	50.910	Gorilla_gorilla
ENSIPUG00000000818	tnrc6c1	98	60.680	ENSHBUG00000010846	tnrc6c1	100	62.094	Haplochromis_burtoni
ENSIPUG00000000818	tnrc6c1	98	53.217	ENSHGLG00000004809	TNRC6C	99	52.597	Heterocephalus_glaber_female
ENSIPUG00000000818	tnrc6c1	98	52.878	ENSHGLG00100012597	TNRC6C	99	52.266	Heterocephalus_glaber_male
ENSIPUG00000000818	tnrc6c1	98	52.323	ENSSTOG00000009101	TNRC6C	99	52.477	Ictidomys_tridecemlineatus
ENSIPUG00000000818	tnrc6c1	97	52.305	ENSJJAG00000017055	Tnrc6c	99	51.358	Jaculus_jaculus
ENSIPUG00000000818	tnrc6c1	99	56.598	ENSKMAG00000021023	tnrc6c1	100	59.515	Kryptolebias_marmoratus
ENSIPUG00000000818	tnrc6c1	92	51.801	ENSLACG00000015283	TNRC6C	99	51.525	Latimeria_chalumnae
ENSIPUG00000000818	tnrc6c1	100	66.382	ENSLOCG00000013377	tnrc6c1	99	67.884	Lepisosteus_oculatus
ENSIPUG00000000818	tnrc6c1	100	51.251	ENSLAFG00000011122	TNRC6C	99	51.556	Loxodonta_africana
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSMFAG00000043943	TNRC6C	99	51.068	Macaca_fascicularis
ENSIPUG00000000818	tnrc6c1	98	51.813	ENSMMUG00000011924	TNRC6C	94	54.432	Macaca_mulatta
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSMNEG00000030405	TNRC6C	99	51.068	Macaca_nemestrina
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSMLEG00000033436	TNRC6C	99	51.068	Mandrillus_leucophaeus
ENSIPUG00000000818	tnrc6c1	98	60.886	ENSMAMG00000023613	tnrc6c1	100	61.187	Mastacembelus_armatus
ENSIPUG00000000818	tnrc6c1	98	60.637	ENSMZEG00005010920	tnrc6c1	99	60.213	Maylandia_zebra
ENSIPUG00000000818	tnrc6c1	92	72.364	ENSMGAG00000003906	TNRC6C	93	71.218	Meleagris_gallopavo
ENSIPUG00000000818	tnrc6c1	89	52.705	ENSMAUG00000021618	Tnrc6c	100	52.676	Mesocricetus_auratus
ENSIPUG00000000818	tnrc6c1	98	51.436	ENSMICG00000003952	TNRC6C	100	53.591	Microcebus_murinus
ENSIPUG00000000818	tnrc6c1	98	51.842	ENSMOCG00000015879	Tnrc6c	99	52.290	Microtus_ochrogaster
ENSIPUG00000000818	tnrc6c1	89	63.088	ENSMMOG00000005203	tnrc6c1	100	62.583	Mola_mola
ENSIPUG00000000818	tnrc6c1	98	53.299	ENSMODG00000001785	TNRC6C	99	52.148	Monodelphis_domestica
ENSIPUG00000000818	tnrc6c1	98	51.689	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	52.531	Mus_caroli
ENSIPUG00000000818	tnrc6c1	98	51.586	ENSMUSG00000025571	Tnrc6c	99	52.508	Mus_musculus
ENSIPUG00000000818	tnrc6c1	98	51.611	MGP_PahariEiJ_G0018593	Tnrc6c	99	52.480	Mus_pahari
ENSIPUG00000000818	tnrc6c1	98	51.535	MGP_SPRETEiJ_G0018309	Tnrc6c	99	52.454	Mus_spretus
ENSIPUG00000000818	tnrc6c1	98	51.511	ENSMPUG00000013348	TNRC6C	98	51.160	Mustela_putorius_furo
ENSIPUG00000000818	tnrc6c1	98	50.326	ENSMLUG00000014431	TNRC6C	98	50.615	Myotis_lucifugus
ENSIPUG00000000818	tnrc6c1	98	52.176	ENSNGAG00000012203	Tnrc6c	99	52.132	Nannospalax_galili
ENSIPUG00000000818	tnrc6c1	94	60.625	ENSNBRG00000005344	tnrc6c1	99	60.718	Neolamprologus_brichardi
ENSIPUG00000000818	tnrc6c1	98	50.781	ENSNLEG00000000047	TNRC6C	98	49.900	Nomascus_leucogenys
ENSIPUG00000000818	tnrc6c1	89	47.336	ENSMEUG00000005104	TNRC6C	99	47.315	Notamacropus_eugenii
ENSIPUG00000000818	tnrc6c1	88	54.792	ENSODEG00000012499	TNRC6C	94	54.860	Octodon_degus
ENSIPUG00000000818	tnrc6c1	89	61.645	ENSONIG00000002210	tnrc6c1	100	62.108	Oreochromis_niloticus
ENSIPUG00000000818	tnrc6c1	94	59.163	ENSORLG00000009837	tnrc6c1	100	77.206	Oryzias_latipes
ENSIPUG00000000818	tnrc6c1	94	57.895	ENSORLG00020016510	tnrc6c1	100	60.885	Oryzias_latipes_hni
ENSIPUG00000000818	tnrc6c1	75	53.516	ENSORLG00015000171	tnrc6c1	98	55.581	Oryzias_latipes_hsok
ENSIPUG00000000818	tnrc6c1	94	60.328	ENSOMEG00000000357	tnrc6c1	99	60.432	Oryzias_melastigma
ENSIPUG00000000818	tnrc6c1	89	51.350	ENSOGAG00000007197	TNRC6C	94	52.518	Otolemur_garnettii
ENSIPUG00000000818	tnrc6c1	94	49.262	ENSOARG00000006041	TNRC6C	98	49.432	Ovis_aries
ENSIPUG00000000818	tnrc6c1	98	51.404	ENSPPAG00000027160	TNRC6C	99	50.690	Pan_paniscus
ENSIPUG00000000818	tnrc6c1	72	60.074	ENSPPRG00000018881	TNRC6C	97	53.647	Panthera_pardus
ENSIPUG00000000818	tnrc6c1	93	45.424	ENSPTIG00000008791	TNRC6C	85	58.880	Panthera_tigris_altaica
ENSIPUG00000000818	tnrc6c1	98	51.404	ENSPTRG00000009699	TNRC6C	99	50.713	Pan_troglodytes
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSPANG00000019994	TNRC6C	99	51.068	Papio_anubis
ENSIPUG00000000818	tnrc6c1	89	61.823	ENSPKIG00000005428	tnrc6c1	100	61.726	Paramormyrops_kingsleyae
ENSIPUG00000000818	tnrc6c1	92	53.118	ENSPSIG00000018069	TNRC6C	99	53.115	Pelodiscus_sinensis
ENSIPUG00000000818	tnrc6c1	84	64.865	ENSPMGG00000022911	tnrc6c1	98	70.930	Periophthalmus_magnuspinnatus
ENSIPUG00000000818	tnrc6c1	97	52.290	ENSPEMG00000009785	Tnrc6c	100	50.697	Peromyscus_maniculatus_bairdii
ENSIPUG00000000818	tnrc6c1	99	59.454	ENSPFOG00000012560	tnrc6c1	99	61.339	Poecilia_formosa
ENSIPUG00000000818	tnrc6c1	89	61.933	ENSPLAG00000021055	tnrc6c1	100	61.851	Poecilia_latipinna
ENSIPUG00000000818	tnrc6c1	98	51.813	ENSPPYG00000008679	TNRC6C	98	51.210	Pongo_abelii
ENSIPUG00000000818	tnrc6c1	81	70.925	ENSPCAG00000012510	TNRC6C	90	71.368	Procavia_capensis
ENSIPUG00000000818	tnrc6c1	89	53.367	ENSPCOG00000021451	TNRC6C	94	54.779	Propithecus_coquereli
ENSIPUG00000000818	tnrc6c1	67	67.717	ENSPVAG00000002008	TNRC6C	95	66.142	Pteropus_vampyrus
ENSIPUG00000000818	tnrc6c1	94	60.145	ENSPNYG00000014477	tnrc6c1	100	61.862	Pundamilia_nyererei
ENSIPUG00000000818	tnrc6c1	75	58.526	ENSRNOG00000022395	Tnrc6c	100	52.266	Rattus_norvegicus
ENSIPUG00000000818	tnrc6c1	98	51.705	ENSRBIG00000027777	TNRC6C	98	51.167	Rhinopithecus_bieti
ENSIPUG00000000818	tnrc6c1	98	51.605	ENSRROG00000042912	TNRC6C	99	50.910	Rhinopithecus_roxellana
ENSIPUG00000000818	tnrc6c1	98	51.509	ENSSBOG00000023981	TNRC6C	99	50.861	Saimiri_boliviensis_boliviensis
ENSIPUG00000000818	tnrc6c1	99	65.502	ENSSFOG00015006475	tnrc6c1	100	65.198	Scleropages_formosus
ENSIPUG00000000818	tnrc6c1	94	60.976	ENSSMAG00000012761	tnrc6c1	100	61.603	Scophthalmus_maximus
ENSIPUG00000000818	tnrc6c1	95	62.003	ENSSDUG00000002366	tnrc6c1	99	62.556	Seriola_dumerili
ENSIPUG00000000818	tnrc6c1	89	63.252	ENSSLDG00000025613	tnrc6c1	100	63.849	Seriola_lalandi_dorsalis
ENSIPUG00000000818	tnrc6c1	63	67.969	ENSSARG00000006816	TNRC6C	90	66.406	Sorex_araneus
ENSIPUG00000000818	tnrc6c1	79	68.085	ENSSPUG00000007341	TNRC6C	93	67.347	Sphenodon_punctatus
ENSIPUG00000000818	tnrc6c1	96	59.424	ENSSPAG00000014977	tnrc6c1	98	62.035	Stegastes_partitus
ENSIPUG00000000818	tnrc6c1	69	64.723	ENSSSCG00000034373	TNRC6C	100	68.246	Sus_scrofa
ENSIPUG00000000818	tnrc6c1	92	53.649	ENSTGUG00000007733	TNRC6C	99	53.156	Taeniopygia_guttata
ENSIPUG00000000818	tnrc6c1	94	60.596	ENSTRUG00000011685	tnrc6c1	100	60.059	Takifugu_rubripes
ENSIPUG00000000818	tnrc6c1	94	59.404	ENSTNIG00000005273	tnrc6c1	100	66.602	Tetraodon_nigroviridis
ENSIPUG00000000818	tnrc6c1	63	54.220	ENSTBEG00000005046	TNRC6C	99	54.226	Tupaia_belangeri
ENSIPUG00000000818	tnrc6c1	92	52.829	ENSTTRG00000010828	TNRC6C	99	53.214	Tursiops_truncatus
ENSIPUG00000000818	tnrc6c1	98	50.894	ENSUMAG00000013614	TNRC6C	99	51.266	Ursus_maritimus
ENSIPUG00000000818	tnrc6c1	88	54.183	ENSVVUG00000015268	TNRC6C	97	54.183	Vulpes_vulpes
ENSIPUG00000000818	tnrc6c1	89	53.024	ENSXETG00000019470	tnrc6c	100	52.641	Xenopus_tropicalis
ENSIPUG00000000818	tnrc6c1	99	59.757	ENSXMAG00000025971	tnrc6c1	100	61.768	Xiphophorus_maculatus