EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000001369 (Gene tree)
Gene ID: 108277149
Gene Symbol: chd1
Alias: fc26h11|fk85d05|si:dkey-106m21.4|wu:fc26h11|wu:fk85d05|zgc:173506
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 18031 bases
Position: chr16:7756850-7774880
Accession: 108277149
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000001996	ResIII	PF04851.15	2.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000002067	-	6077	XM_017489592	ENSIPUP00000001965	1816 (aa)	XP_017345081	A0A2D0SQV7
ENSIPUT00000002100	-	4758	-	ENSIPUP00000001996	1585 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000001369's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000001369's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000001369	chd1	92	59.190	ENSIPUG00000000488	chd2	89	59.032

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000001369	chd1	92	81.380	ENSG00000153922	CHD1	91	83.495	Homo_sapiens
ENSIPUG00000001369	chd1	72	89.072	ENSAPOG00000005764	chd1	96	90.363	Acanthochromis_polyacanthus
ENSIPUG00000001369	chd1	96	82.205	ENSAOCG00000023105	chd1	96	82.892	Amphiprion_ocellaris
ENSIPUG00000001369	chd1	96	83.376	ENSAPEG00000013544	chd1	96	84.065	Amphiprion_percula
ENSIPUG00000001369	chd1	96	82.020	ENSATEG00000010676	chd1	89	85.887	Anabas_testudineus
ENSIPUG00000001369	chd1	78	91.276	ENSAMXG00000010843	chd1	95	91.195	Astyanax_mexicanus
ENSIPUG00000001369	chd1	95	79.675	ENSCATG00000032035	CHD1	87	81.782	Cercocebus_atys
ENSIPUG00000001369	chd1	95	79.610	ENSCSAG00000015339	CHD1	86	81.715	Chlorocebus_sabaeus
ENSIPUG00000001369	chd1	55	79.977	ENSCPBG00000015831	CHD1	82	81.969	Chrysemys_picta_bellii
ENSIPUG00000001369	chd1	92	79.102	ENSCANG00000036916	CHD1	87	79.303	Colobus_angolensis_palliatus
ENSIPUG00000001369	chd1	95	79.389	ENSCGRG00001023943	Chd1	87	81.233	Cricetulus_griseus_chok1gshd
ENSIPUG00000001369	chd1	95	79.389	ENSCGRG00000008652	Chd1	87	81.233	Cricetulus_griseus_crigri
ENSIPUG00000001369	chd1	96	80.989	ENSCSEG00000009553	chd1	93	83.176	Cynoglossus_semilaevis
ENSIPUG00000001369	chd1	92	77.608	ENSEASG00005016110	CHD1	93	77.999	Equus_asinus_asinus
ENSIPUG00000001369	chd1	95	85.518	ENSELUG00000017677	chd1	90	86.649	Esox_lucius
ENSIPUG00000001369	chd1	77	87.234	ENSFHEG00000021164	chd1	89	87.234	Fundulus_heteroclitus
ENSIPUG00000001369	chd1	95	87.457	ENSGMOG00000001537	chd1	90	74.284	Gadus_morhua
ENSIPUG00000001369	chd1	97	77.735	ENSGALG00000031327	-	91	80.000	Gallus_gallus
ENSIPUG00000001369	chd1	81	88.940	ENSGAFG00000019880	chd1	87	80.444	Gambusia_affinis
ENSIPUG00000001369	chd1	92	77.897	ENSGGOG00000011463	CHD1	87	77.941	Gorilla_gorilla
ENSIPUG00000001369	chd1	96	83.173	ENSHCOG00000014222	chd1	95	83.258	Hippocampus_comes
ENSIPUG00000001369	chd1	56	83.128	ENSLAFG00000023183	CHD1	79	86.118	Loxodonta_africana
ENSIPUG00000001369	chd1	95	79.610	ENSMFAG00000031226	CHD1	87	81.715	Macaca_fascicularis
ENSIPUG00000001369	chd1	77	82.686	ENSMMUG00000014090	CHD1	83	84.945	Macaca_mulatta
ENSIPUG00000001369	chd1	95	79.610	ENSMNEG00000045073	CHD1	87	81.715	Macaca_nemestrina
ENSIPUG00000001369	chd1	95	75.130	ENSMLEG00000041096	CHD1	87	77.763	Mandrillus_leucophaeus
ENSIPUG00000001369	chd1	78	87.611	ENSMZEG00005010957	chd1	94	88.325	Maylandia_zebra
ENSIPUG00000001369	chd1	92	79.406	ENSMOCG00000019121	Chd1	86	79.811	Microtus_ochrogaster
ENSIPUG00000001369	chd1	77	88.446	ENSMALG00000013317	chd1	84	89.408	Monopterus_albus
ENSIPUG00000001369	chd1	92	81.045	MGP_CAROLIEiJ_G0021099	Chd1	87	81.447	Mus_caroli
ENSIPUG00000001369	chd1	92	80.911	ENSMUSG00000023852	Chd1	87	81.313	Mus_musculus
ENSIPUG00000001369	chd1	92	81.427	MGP_PahariEiJ_G0023414	Chd1	87	81.720	Mus_pahari
ENSIPUG00000001369	chd1	96	81.142	ENSNBRG00000006860	chd1	95	81.310	Neolamprologus_brichardi
ENSIPUG00000001369	chd1	92	79.747	ENSNLEG00000014493	CHD1	87	80.106	Nomascus_leucogenys
ENSIPUG00000001369	chd1	95	80.208	ENSOANG00000004891	CHD1	100	81.691	Ornithorhynchus_anatinus
ENSIPUG00000001369	chd1	58	84.918	ENSORLG00015016725	chd1	80	88.290	Oryzias_latipes_hsok
ENSIPUG00000001369	chd1	92	79.800	ENSPPAG00000043367	CHD1	88	80.467	Pan_paniscus
ENSIPUG00000001369	chd1	92	81.313	ENSPTRG00000017103	CHD1	87	81.702	Pan_troglodytes
ENSIPUG00000001369	chd1	95	79.610	ENSPANG00000006387	CHD1	87	81.715	Papio_anubis
ENSIPUG00000001369	chd1	95	80.432	ENSPKIG00000024719	chd1	92	80.996	Paramormyrops_kingsleyae
ENSIPUG00000001369	chd1	75	90.201	ENSPMGG00000005785	chd1	90	90.201	Periophthalmus_magnuspinnatus
ENSIPUG00000001369	chd1	92	80.442	ENSPEMG00000015939	Chd1	86	80.844	Peromyscus_maniculatus_bairdii
ENSIPUG00000001369	chd1	95	81.605	ENSPREG00000004209	chd1	90	81.605	Poecilia_reticulata
ENSIPUG00000001369	chd1	75	84.428	ENSRNOG00000014434	Chd1	83	84.428	Rattus_norvegicus
ENSIPUG00000001369	chd1	95	78.190	ENSRBIG00000044325	CHD1	87	80.188	Rhinopithecus_bieti
ENSIPUG00000001369	chd1	95	79.662	ENSRROG00000001726	CHD1	87	81.648	Rhinopithecus_roxellana
ENSIPUG00000001369	chd1	77	88.020	ENSSFOG00015007161	chd1	91	88.068	Scleropages_formosus
ENSIPUG00000001369	chd1	77	89.551	ENSSDUG00000018314	chd1	84	90.544	Seriola_dumerili
ENSIPUG00000001369	chd1	55	90.795	ENSSLDG00000017244	chd1	85	92.019	Seriola_lalandi_dorsalis
ENSIPUG00000001369	chd1	77	90.106	ENSSPAG00000007024	chd1	84	91.122	Stegastes_partitus
ENSIPUG00000001369	chd1	82	83.143	ENSSSCG00000014177	CHD1	85	85.886	Sus_scrofa
ENSIPUG00000001369	chd1	94	81.184	ENSTRUG00000010282	chd1	89	81.645	Takifugu_rubripes
ENSIPUG00000001369	chd1	69	88.230	ENSTNIG00000007101	chd1	85	87.956	Tetraodon_nigroviridis
ENSIPUG00000001369	chd1	98	76.199	ENSXCOG00000017184	chd1	91	78.694	Xiphophorus_couchianus
ENSIPUG00000001369	chd1	76	86.352	ENSXMAG00000014538	chd1	87	87.722	Xiphophorus_maculatus