EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000001420 (Gene tree)
Gene ID: 108269862
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 7739 bases
Position: chr9:16780254-16787992
Accession: 108269862
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000002004	SRP54	PF00448.22	1.1e-77	1	1
ENSIPUP00000002004	SRP54_N	PF02881.19	4.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000002107	-	2949	XM_017475959	ENSIPUP00000002004	504 (aa)	XP_017331448	A0A2D0RLQ2

Gene Model

Click here to download ENSIPUG00000001420's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000001420's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000001420	srp54	100	95.238	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSIPUG00000001420	srp54	100	97.619	ENSAPOG00000011314	srp54	100	97.619	Acanthochromis_polyacanthus
ENSIPUG00000001420	srp54	100	95.238	ENSAMEG00000015544	SRP54	100	95.238	Ailuropoda_melanoleuca
ENSIPUG00000001420	srp54	89	95.768	ENSACIG00000022831	srp54	97	95.768	Amphilophus_citrinellus
ENSIPUG00000001420	srp54	100	97.619	ENSAOCG00000019401	srp54	100	97.619	Amphiprion_ocellaris
ENSIPUG00000001420	srp54	100	97.619	ENSAPEG00000001977	srp54	100	97.619	Amphiprion_percula
ENSIPUG00000001420	srp54	100	97.619	ENSATEG00000013877	srp54	100	97.619	Anabas_testudineus
ENSIPUG00000001420	srp54	94	94.937	ENSAPLG00000010125	SRP54	95	94.937	Anas_platyrhynchos
ENSIPUG00000001420	srp54	100	95.040	ENSACAG00000002103	-	100	95.040	Anolis_carolinensis
ENSIPUG00000001420	srp54	65	79.758	ENSACAG00000001124	-	100	79.758	Anolis_carolinensis
ENSIPUG00000001420	srp54	86	92.166	ENSACAG00000010631	-	100	92.166	Anolis_carolinensis
ENSIPUG00000001420	srp54	100	95.238	ENSANAG00000022133	SRP54	100	95.238	Aotus_nancymaae
ENSIPUG00000001420	srp54	100	97.421	ENSACLG00000015866	srp54	100	97.421	Astatotilapia_calliptera
ENSIPUG00000001420	srp54	100	98.810	ENSAMXG00000032669	SRP54	100	98.810	Astyanax_mexicanus
ENSIPUG00000001420	srp54	100	95.238	ENSBTAG00000019085	SRP54	100	95.238	Bos_taurus
ENSIPUG00000001420	srp54	98	73.293	WBGene00009012	F21D5.7	100	73.293	Caenorhabditis_elegans
ENSIPUG00000001420	srp54	100	95.238	ENSCJAG00000006581	SRP54	100	95.238	Callithrix_jacchus
ENSIPUG00000001420	srp54	100	95.238	ENSCAFG00000013331	SRP54	100	95.238	Canis_familiaris
ENSIPUG00000001420	srp54	100	95.238	ENSCAFG00020023427	SRP54	100	95.238	Canis_lupus_dingo
ENSIPUG00000001420	srp54	100	95.238	ENSCHIG00000026345	SRP54	100	95.238	Capra_hircus
ENSIPUG00000001420	srp54	100	95.040	ENSTSYG00000002680	-	100	95.040	Carlito_syrichta
ENSIPUG00000001420	srp54	94	83.579	ENSTSYG00000035333	-	93	83.579	Carlito_syrichta
ENSIPUG00000001420	srp54	94	62.041	ENSCAPG00000008780	SRP54	100	62.041	Cavia_aperea
ENSIPUG00000001420	srp54	100	94.841	ENSCPOG00000003691	SRP54	100	94.841	Cavia_porcellus
ENSIPUG00000001420	srp54	90	94.762	ENSCCAG00000024179	SRP54	100	94.988	Cebus_capucinus
ENSIPUG00000001420	srp54	100	95.238	ENSCATG00000034083	SRP54	100	95.238	Cercocebus_atys
ENSIPUG00000001420	srp54	100	95.238	ENSCLAG00000015076	SRP54	100	95.238	Chinchilla_lanigera
ENSIPUG00000001420	srp54	100	95.238	ENSCSAG00000015575	SRP54	100	95.238	Chlorocebus_sabaeus
ENSIPUG00000001420	srp54	95	83.784	ENSCHOG00000008986	SRP54	100	83.784	Choloepus_hoffmanni
ENSIPUG00000001420	srp54	100	95.635	ENSCPBG00000026195	SRP54	100	95.635	Chrysemys_picta_bellii
ENSIPUG00000001420	srp54	100	82.341	ENSCING00000007380	-	100	82.341	Ciona_intestinalis
ENSIPUG00000001420	srp54	100	95.238	ENSCANG00000028532	SRP54	100	95.238	Colobus_angolensis_palliatus
ENSIPUG00000001420	srp54	100	95.238	ENSCGRG00001009525	-	100	95.238	Cricetulus_griseus_chok1gshd
ENSIPUG00000001420	srp54	76	96.104	ENSCGRG00000009453	-	89	96.104	Cricetulus_griseus_crigri
ENSIPUG00000001420	srp54	100	96.825	ENSCSEG00000012392	srp54	100	96.825	Cynoglossus_semilaevis
ENSIPUG00000001420	srp54	100	97.619	ENSCVAG00000010395	srp54	100	97.619	Cyprinodon_variegatus
ENSIPUG00000001420	srp54	100	98.810	ENSDARG00000098367	srp54	100	98.810	Danio_rerio
ENSIPUG00000001420	srp54	100	95.238	ENSDNOG00000032525	SRP54	100	95.238	Dasypus_novemcinctus
ENSIPUG00000001420	srp54	89	80.531	ENSDORG00000005159	-	98	80.531	Dipodomys_ordii
ENSIPUG00000001420	srp54	96	79.794	FBgn0010747	Srp54k	98	79.317	Drosophila_melanogaster
ENSIPUG00000001420	srp54	81	55.882	ENSETEG00000012102	-	98	55.882	Echinops_telfairi
ENSIPUG00000001420	srp54	100	94.048	ENSETEG00000016307	-	100	94.048	Echinops_telfairi
ENSIPUG00000001420	srp54	100	88.492	ENSEBUG00000009437	-	100	88.492	Eptatretus_burgeri
ENSIPUG00000001420	srp54	100	95.238	ENSEASG00005002057	SRP54	100	95.238	Equus_asinus_asinus
ENSIPUG00000001420	srp54	99	94.980	ENSECAG00000018042	SRP54	98	94.980	Equus_caballus
ENSIPUG00000001420	srp54	100	79.167	ENSEEUG00000001511	SRP54	100	79.167	Erinaceus_europaeus
ENSIPUG00000001420	srp54	100	97.421	ENSELUG00000003395	srp54	100	97.421	Esox_lucius
ENSIPUG00000001420	srp54	100	95.040	ENSFCAG00000032033	SRP54	100	95.040	Felis_catus
ENSIPUG00000001420	srp54	100	95.238	ENSFALG00000005995	SRP54	100	95.238	Ficedula_albicollis
ENSIPUG00000001420	srp54	100	95.238	ENSFDAG00000016767	SRP54	100	95.238	Fukomys_damarensis
ENSIPUG00000001420	srp54	100	97.619	ENSFHEG00000004263	srp54	100	97.619	Fundulus_heteroclitus
ENSIPUG00000001420	srp54	95	92.678	ENSGMOG00000011391	srp54	100	92.678	Gadus_morhua
ENSIPUG00000001420	srp54	100	95.238	ENSGALG00000023135	SRP54	100	95.238	Gallus_gallus
ENSIPUG00000001420	srp54	100	97.817	ENSGAFG00000011586	srp54	100	97.817	Gambusia_affinis
ENSIPUG00000001420	srp54	100	98.016	ENSGACG00000004181	srp54	100	98.016	Gasterosteus_aculeatus
ENSIPUG00000001420	srp54	100	95.635	ENSGAGG00000014766	SRP54	100	95.635	Gopherus_agassizii
ENSIPUG00000001420	srp54	100	95.238	ENSGGOG00000002926	SRP54	100	95.238	Gorilla_gorilla
ENSIPUG00000001420	srp54	100	97.421	ENSHBUG00000005678	srp54	100	97.421	Haplochromis_burtoni
ENSIPUG00000001420	srp54	100	95.238	ENSHGLG00000002850	SRP54	100	95.238	Heterocephalus_glaber_female
ENSIPUG00000001420	srp54	100	95.238	ENSHGLG00100005263	SRP54	100	95.238	Heterocephalus_glaber_male
ENSIPUG00000001420	srp54	100	66.535	ENSHGLG00100007281	-	100	66.535	Heterocephalus_glaber_male
ENSIPUG00000001420	srp54	100	96.230	ENSHCOG00000021127	srp54	100	96.230	Hippocampus_comes
ENSIPUG00000001420	srp54	100	95.238	ENSSTOG00000016023	SRP54	100	95.238	Ictidomys_tridecemlineatus
ENSIPUG00000001420	srp54	100	90.476	ENSJJAG00000013417	-	100	90.476	Jaculus_jaculus
ENSIPUG00000001420	srp54	87	74.318	ENSJJAG00000016404	-	100	74.318	Jaculus_jaculus
ENSIPUG00000001420	srp54	100	97.222	ENSKMAG00000007707	srp54	100	97.222	Kryptolebias_marmoratus
ENSIPUG00000001420	srp54	100	97.619	ENSLBEG00000021122	srp54	100	97.619	Labrus_bergylta
ENSIPUG00000001420	srp54	100	97.619	ENSLBEG00000018690	srp54	100	97.619	Labrus_bergylta
ENSIPUG00000001420	srp54	100	96.429	ENSLACG00000017890	SRP54	100	96.429	Latimeria_chalumnae
ENSIPUG00000001420	srp54	100	97.817	ENSLOCG00000009440	srp54	100	97.817	Lepisosteus_oculatus
ENSIPUG00000001420	srp54	100	95.238	ENSLAFG00000012007	SRP54	100	95.238	Loxodonta_africana
ENSIPUG00000001420	srp54	100	95.238	ENSMFAG00000044371	SRP54	100	95.238	Macaca_fascicularis
ENSIPUG00000001420	srp54	100	95.238	ENSMMUG00000015073	FAM177A1	100	95.238	Macaca_mulatta
ENSIPUG00000001420	srp54	100	95.238	ENSMNEG00000006947	SRP54	100	95.238	Macaca_nemestrina
ENSIPUG00000001420	srp54	100	95.238	ENSMLEG00000042251	SRP54	100	95.238	Mandrillus_leucophaeus
ENSIPUG00000001420	srp54	100	97.421	ENSMAMG00000004803	srp54	100	97.421	Mastacembelus_armatus
ENSIPUG00000001420	srp54	100	97.421	ENSMZEG00005027528	srp54	100	97.421	Maylandia_zebra
ENSIPUG00000001420	srp54	100	90.909	ENSMGAG00000012481	SRP54	100	90.909	Meleagris_gallopavo
ENSIPUG00000001420	srp54	100	95.437	ENSMAUG00000014447	-	100	95.437	Mesocricetus_auratus
ENSIPUG00000001420	srp54	100	95.238	ENSMICG00000010270	SRP54	100	95.238	Microcebus_murinus
ENSIPUG00000001420	srp54	87	95.227	ENSMOCG00000000948	-	100	95.227	Microtus_ochrogaster
ENSIPUG00000001420	srp54	90	94.934	ENSMMOG00000020303	srp54	99	94.934	Mola_mola
ENSIPUG00000001420	srp54	100	95.238	ENSMODG00000012925	-	100	95.238	Monodelphis_domestica
ENSIPUG00000001420	srp54	100	95.238	ENSMODG00000023150	-	100	95.238	Monodelphis_domestica
ENSIPUG00000001420	srp54	89	95.759	ENSMALG00000009163	srp54	99	95.759	Monopterus_albus
ENSIPUG00000001420	srp54	100	95.437	MGP_CAROLIEiJ_G0017754	-	100	95.437	Mus_caroli
ENSIPUG00000001420	srp54	100	94.643	ENSMUSG00000079108	Srp54c	100	94.643	Mus_musculus
ENSIPUG00000001420	srp54	100	95.437	ENSMUSG00000112449	Srp54b	100	95.437	Mus_musculus
ENSIPUG00000001420	srp54	100	95.437	ENSMUSG00000073079	Srp54a	100	95.437	Mus_musculus
ENSIPUG00000001420	srp54	100	95.437	MGP_PahariEiJ_G0029510	-	100	95.437	Mus_pahari
ENSIPUG00000001420	srp54	100	95.238	ENSMPUG00000016302	SRP54	100	95.238	Mustela_putorius_furo
ENSIPUG00000001420	srp54	100	94.643	ENSMLUG00000008958	SRP54	100	94.643	Myotis_lucifugus
ENSIPUG00000001420	srp54	100	85.913	ENSNGAG00000019806	-	100	85.913	Nannospalax_galili
ENSIPUG00000001420	srp54	87	97.273	ENSNBRG00000006000	srp54	100	97.273	Neolamprologus_brichardi
ENSIPUG00000001420	srp54	100	95.238	ENSNLEG00000003496	SRP54	100	95.238	Nomascus_leucogenys
ENSIPUG00000001420	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSIPUG00000001420	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSIPUG00000001420	srp54	100	95.238	ENSODEG00000004865	SRP54	100	95.238	Octodon_degus
ENSIPUG00000001420	srp54	100	97.421	ENSONIG00000011768	srp54	100	97.421	Oreochromis_niloticus
ENSIPUG00000001420	srp54	100	95.238	ENSOANG00000014051	SRP54	100	95.238	Ornithorhynchus_anatinus
ENSIPUG00000001420	srp54	100	94.643	ENSOCUG00000007838	SRP54	100	94.643	Oryctolagus_cuniculus
ENSIPUG00000001420	srp54	100	97.619	ENSORLG00000010027	srp54	100	97.619	Oryzias_latipes
ENSIPUG00000001420	srp54	100	97.619	ENSORLG00020001878	srp54	100	97.619	Oryzias_latipes_hni
ENSIPUG00000001420	srp54	100	97.619	ENSORLG00015021866	srp54	100	97.619	Oryzias_latipes_hsok
ENSIPUG00000001420	srp54	100	97.421	ENSOMEG00000020952	srp54	100	97.421	Oryzias_melastigma
ENSIPUG00000001420	srp54	100	95.238	ENSOGAG00000012188	SRP54	100	95.238	Otolemur_garnettii
ENSIPUG00000001420	srp54	100	95.238	ENSOARG00000007160	SRP54	100	95.238	Ovis_aries
ENSIPUG00000001420	srp54	100	95.238	ENSPPAG00000017434	SRP54	100	95.238	Pan_paniscus
ENSIPUG00000001420	srp54	100	94.246	ENSPPRG00000014047	SRP54	100	94.246	Panthera_pardus
ENSIPUG00000001420	srp54	100	95.040	ENSPTIG00000000744	SRP54	96	95.040	Panthera_tigris_altaica
ENSIPUG00000001420	srp54	100	95.238	ENSPTRG00000006259	FAM177A1	100	95.238	Pan_troglodytes
ENSIPUG00000001420	srp54	100	95.238	ENSPANG00000023853	SRP54	100	95.238	Papio_anubis
ENSIPUG00000001420	srp54	100	98.016	ENSPKIG00000001953	srp54	100	98.016	Paramormyrops_kingsleyae
ENSIPUG00000001420	srp54	100	95.437	ENSPSIG00000006476	SRP54	100	95.437	Pelodiscus_sinensis
ENSIPUG00000001420	srp54	91	94.565	ENSPMGG00000004127	srp54	99	94.565	Periophthalmus_magnuspinnatus
ENSIPUG00000001420	srp54	100	83.532	ENSPEMG00000019634	-	100	83.532	Peromyscus_maniculatus_bairdii
ENSIPUG00000001420	srp54	100	90.873	ENSPMAG00000006078	-	100	90.873	Petromyzon_marinus
ENSIPUG00000001420	srp54	100	95.238	ENSPCIG00000016175	SRP54	100	95.238	Phascolarctos_cinereus
ENSIPUG00000001420	srp54	100	97.817	ENSPFOG00000008870	srp54	100	97.817	Poecilia_formosa
ENSIPUG00000001420	srp54	100	97.817	ENSPLAG00000009889	srp54	100	97.817	Poecilia_latipinna
ENSIPUG00000001420	srp54	100	97.817	ENSPMEG00000008601	srp54	100	97.817	Poecilia_mexicana
ENSIPUG00000001420	srp54	100	97.817	ENSPREG00000004505	srp54	100	97.817	Poecilia_reticulata
ENSIPUG00000001420	srp54	100	90.476	ENSPPYG00000005739	SRP54	100	90.476	Pongo_abelii
ENSIPUG00000001420	srp54	100	91.468	ENSPCAG00000006268	SRP54	100	91.468	Procavia_capensis
ENSIPUG00000001420	srp54	100	93.465	ENSPCOG00000022473	SRP54	100	93.465	Propithecus_coquereli
ENSIPUG00000001420	srp54	63	96.413	ENSPVAG00000010056	SRP54	82	96.413	Pteropus_vampyrus
ENSIPUG00000001420	srp54	100	97.421	ENSPNYG00000009717	srp54	100	97.421	Pundamilia_nyererei
ENSIPUG00000001420	srp54	100	99.008	ENSPNAG00000008544	srp54	100	99.008	Pygocentrus_nattereri
ENSIPUG00000001420	srp54	100	95.238	ENSRNOG00000032776	Srp54a	100	95.238	Rattus_norvegicus
ENSIPUG00000001420	srp54	100	95.238	ENSRROG00000041292	SRP54	100	95.238	Rhinopithecus_roxellana
ENSIPUG00000001420	srp54	86	51.247	YPR088C	SRP54	95	46.935	Saccharomyces_cerevisiae
ENSIPUG00000001420	srp54	94	94.937	ENSSBOG00000035145	SRP54	100	94.937	Saimiri_boliviensis_boliviensis
ENSIPUG00000001420	srp54	68	95.044	ENSSHAG00000000671	SRP54	100	95.044	Sarcophilus_harrisii
ENSIPUG00000001420	srp54	100	97.619	ENSSFOG00015013920	srp54	100	97.619	Scleropages_formosus
ENSIPUG00000001420	srp54	100	91.760	ENSSMAG00000002441	srp54	100	91.760	Scophthalmus_maximus
ENSIPUG00000001420	srp54	100	97.024	ENSSDUG00000018586	srp54	100	97.024	Seriola_dumerili
ENSIPUG00000001420	srp54	100	97.222	ENSSLDG00000010476	srp54	100	97.222	Seriola_lalandi_dorsalis
ENSIPUG00000001420	srp54	100	95.238	ENSSARG00000002744	SRP54	100	95.238	Sorex_araneus
ENSIPUG00000001420	srp54	100	95.635	ENSSPUG00000013101	SRP54	100	95.635	Sphenodon_punctatus
ENSIPUG00000001420	srp54	100	97.619	ENSSPAG00000002354	srp54	100	97.619	Stegastes_partitus
ENSIPUG00000001420	srp54	100	95.238	ENSSSCG00000001955	SRP54	100	95.238	Sus_scrofa
ENSIPUG00000001420	srp54	94	94.937	ENSTGUG00000011945	-	95	94.937	Taeniopygia_guttata
ENSIPUG00000001420	srp54	100	97.024	ENSTRUG00000007057	srp54	100	97.024	Takifugu_rubripes
ENSIPUG00000001420	srp54	100	96.429	ENSTNIG00000002589	srp54	100	96.429	Tetraodon_nigroviridis
ENSIPUG00000001420	srp54	89	86.353	ENSTBEG00000011409	SRP54	100	86.353	Tupaia_belangeri
ENSIPUG00000001420	srp54	100	85.913	ENSTTRG00000000928	SRP54	100	85.913	Tursiops_truncatus
ENSIPUG00000001420	srp54	52	95.802	ENSUAMG00000012385	SRP54	100	95.802	Ursus_americanus
ENSIPUG00000001420	srp54	100	95.238	ENSUMAG00000011234	SRP54	100	95.238	Ursus_maritimus
ENSIPUG00000001420	srp54	94	94.726	ENSVPAG00000005668	SRP54	100	94.726	Vicugna_pacos
ENSIPUG00000001420	srp54	100	95.238	ENSVVUG00000019962	SRP54	100	95.238	Vulpes_vulpes
ENSIPUG00000001420	srp54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSIPUG00000001420	srp54	88	97.517	ENSXCOG00000004658	srp54	96	97.517	Xiphophorus_couchianus
ENSIPUG00000001420	srp54	100	97.817	ENSXMAG00000018315	srp54	100	97.817	Xiphophorus_maculatus