EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000001676 (Gene tree)
Gene ID: 108266842
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 47424 bases
Position: chr6:20164835-20212258
Accession: 108266842
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000002434	R3H	PF01424.22	1.3e-12	1	1
ENSIPUP00000002407	R3H	PF01424.22	1.3e-12	1	1
ENSIPUP00000002392	R3H	PF01424.22	1.4e-12	1	1
ENSIPUP00000002459	R3H	PF01424.22	1.4e-12	1	1
ENSIPUP00000002372	R3H	PF01424.22	1.4e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000002593	R3HDM1-205	2793	-	ENSIPUP00000002459	930 (aa)	-	-
ENSIPUT00000002502	R3HDM1-201	5440	XM_017470636	ENSIPUP00000002372	959 (aa)	XP_017326125	-
ENSIPUT00000002541	R3HDM1-203	5338	XM_017470634	ENSIPUP00000002407	925 (aa)	XP_017326123	-
ENSIPUT00000002568	R3HDM1-204	5272	XM_017470628	ENSIPUP00000002434	903 (aa)	XP_017326117	-
ENSIPUT00000002524	R3HDM1-202	5368	-	ENSIPUP00000002392	935 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000001676's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000001676's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000001676	R3HDM1	57	48.729	ENSIPUG00000020552	arpp21	81	46.996
ENSIPUG00000001676	R3HDM1	81	61.875	ENSIPUG00000023873	r3hdm2	75	63.366
ENSIPUG00000001676	R3HDM1	91	72.100	ENSIPUG00000013629	r3hdm1	88	65.229

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000001676	R3HDM1	99	56.888	ENSG00000048991	R3HDM1	97	76.056	Homo_sapiens
ENSIPUG00000001676	R3HDM1	100	63.017	ENSAPOG00000020850	r3hdm1	83	71.250	Acanthochromis_polyacanthus
ENSIPUG00000001676	R3HDM1	99	66.507	ENSAMEG00000014886	R3HDM1	81	66.587	Ailuropoda_melanoleuca
ENSIPUG00000001676	R3HDM1	100	62.774	ENSAOCG00000005192	r3hdm1	92	62.559	Amphiprion_ocellaris
ENSIPUG00000001676	R3HDM1	89	72.131	ENSAPEG00000016108	r3hdm1	86	71.519	Amphiprion_percula
ENSIPUG00000001676	R3HDM1	89	72.168	ENSATEG00000000232	r3hdm1	86	71.562	Anabas_testudineus
ENSIPUG00000001676	R3HDM1	99	66.429	ENSAPLG00000015231	R3HDM1	89	58.466	Anas_platyrhynchos
ENSIPUG00000001676	R3HDM1	99	66.507	ENSACAG00000001676	R3HDM1	82	66.348	Anolis_carolinensis
ENSIPUG00000001676	R3HDM1	100	65.789	ENSANAG00000035334	R3HDM1	87	68.365	Aotus_nancymaae
ENSIPUG00000001676	R3HDM1	100	58.765	ENSACLG00000027282	r3hdm1	86	70.625	Astatotilapia_calliptera
ENSIPUG00000001676	R3HDM1	100	85.645	ENSAMXG00000012861	R3HDM1	89	83.333	Astyanax_mexicanus
ENSIPUG00000001676	R3HDM1	68	39.242	ENSAMXG00000020587	arpp21	88	36.207	Astyanax_mexicanus
ENSIPUG00000001676	R3HDM1	94	76.232	ENSAMXG00000003536	r3hdm1	89	59.372	Astyanax_mexicanus
ENSIPUG00000001676	R3HDM1	99	66.268	ENSBTAG00000013302	R3HDM1	82	66.348	Bos_taurus
ENSIPUG00000001676	R3HDM1	99	65.789	ENSCJAG00000011718	R3HDM1	87	68.365	Callithrix_jacchus
ENSIPUG00000001676	R3HDM1	99	66.507	ENSCAFG00000005075	R3HDM1	81	66.587	Canis_familiaris
ENSIPUG00000001676	R3HDM1	99	66.507	ENSCAFG00020016119	R3HDM1	94	60.305	Canis_lupus_dingo
ENSIPUG00000001676	R3HDM1	99	66.746	ENSCHIG00000020851	R3HDM1	82	66.826	Capra_hircus
ENSIPUG00000001676	R3HDM1	99	62.619	ENSCPOG00000012784	R3HDM1	99	65.424	Cavia_porcellus
ENSIPUG00000001676	R3HDM1	91	73.913	ENSCCAG00000027199	R3HDM1	87	67.828	Cebus_capucinus
ENSIPUG00000001676	R3HDM1	99	65.072	ENSCATG00000023642	R3HDM1	82	73.041	Cercocebus_atys
ENSIPUG00000001676	R3HDM1	99	64.048	ENSCLAG00000007962	R3HDM1	99	67.340	Chinchilla_lanigera
ENSIPUG00000001676	R3HDM1	99	65.311	ENSCSAG00000016356	R3HDM1	82	65.632	Chlorocebus_sabaeus
ENSIPUG00000001676	R3HDM1	79	68.841	ENSCHOG00000013638	R3HDM1	70	68.841	Choloepus_hoffmanni
ENSIPUG00000001676	R3HDM1	80	76.619	ENSCPBG00000009645	R3HDM1	86	78.755	Chrysemys_picta_bellii
ENSIPUG00000001676	R3HDM1	99	65.311	ENSCANG00000034748	R3HDM1	82	73.668	Colobus_angolensis_palliatus
ENSIPUG00000001676	R3HDM1	99	65.311	ENSCGRG00001012357	R3hdm1	86	55.863	Cricetulus_griseus_chok1gshd
ENSIPUG00000001676	R3HDM1	99	65.311	ENSCGRG00000012080	R3hdm1	99	69.831	Cricetulus_griseus_crigri
ENSIPUG00000001676	R3HDM1	94	64.957	ENSCSEG00000008944	r3hdm1	87	67.477	Cynoglossus_semilaevis
ENSIPUG00000001676	R3HDM1	100	59.709	ENSCVAG00000007582	r3hdm1	85	70.779	Cyprinodon_variegatus
ENSIPUG00000001676	R3HDM1	63	48.875	ENSDARG00000061081	arpp21	86	51.837	Danio_rerio
ENSIPUG00000001676	R3HDM1	99	54.935	ENSDNOG00000000771	R3HDM1	89	54.726	Dasypus_novemcinctus
ENSIPUG00000001676	R3HDM1	91	64.200	ENSETEG00000013606	R3HDM1	78	65.714	Echinops_telfairi
ENSIPUG00000001676	R3HDM1	70	39.525	ENSEBUG00000014746	arpp21	98	41.385	Eptatretus_burgeri
ENSIPUG00000001676	R3HDM1	99	66.029	ENSEASG00005007392	R3HDM1	88	61.391	Equus_asinus_asinus
ENSIPUG00000001676	R3HDM1	99	68.317	ENSECAG00000019114	R3HDM1	81	72.222	Equus_caballus
ENSIPUG00000001676	R3HDM1	76	61.758	ENSEEUG00000012589	R3HDM1	62	61.589	Erinaceus_europaeus
ENSIPUG00000001676	R3HDM1	99	70.960	ENSELUG00000004909	R3HDM1	82	78.962	Esox_lucius
ENSIPUG00000001676	R3HDM1	96	54.289	ENSELUG00000014413	r3hdm1	85	57.080	Esox_lucius
ENSIPUG00000001676	R3HDM1	99	66.507	ENSFCAG00000027113	R3HDM1	76	75.079	Felis_catus
ENSIPUG00000001676	R3HDM1	99	58.728	ENSFALG00000013731	R3HDM1	83	66.746	Ficedula_albicollis
ENSIPUG00000001676	R3HDM1	99	65.550	ENSFDAG00000016478	R3HDM1	99	69.492	Fukomys_damarensis
ENSIPUG00000001676	R3HDM1	100	61.220	ENSFHEG00000018713	r3hdm1	92	61.098	Fundulus_heteroclitus
ENSIPUG00000001676	R3HDM1	71	71.694	ENSGMOG00000006042	-	79	69.303	Gadus_morhua
ENSIPUG00000001676	R3HDM1	85	71.935	ENSGALG00000012246	R3HDM1	86	71.845	Gallus_gallus
ENSIPUG00000001676	R3HDM1	93	52.973	ENSGAFG00000006203	r3hdm1	85	70.032	Gambusia_affinis
ENSIPUG00000001676	R3HDM1	93	68.195	ENSGACG00000014925	r3hdm1	87	67.778	Gasterosteus_aculeatus
ENSIPUG00000001676	R3HDM1	99	66.029	ENSGAGG00000007840	R3HDM1	76	72.727	Gopherus_agassizii
ENSIPUG00000001676	R3HDM1	98	58.947	ENSGGOG00000008156	R3HDM1	91	67.980	Gorilla_gorilla
ENSIPUG00000001676	R3HDM1	52	56.705	ENSHBUG00000015737	R3HDM1	91	57.280	Haplochromis_burtoni
ENSIPUG00000001676	R3HDM1	99	64.578	ENSHGLG00000015718	R3HDM1	99	68.814	Heterocephalus_glaber_female
ENSIPUG00000001676	R3HDM1	99	64.748	ENSHGLG00100003184	-	99	69.153	Heterocephalus_glaber_male
ENSIPUG00000001676	R3HDM1	99	47.429	ENSHGLG00100015374	-	91	47.881	Heterocephalus_glaber_male
ENSIPUG00000001676	R3HDM1	90	66.981	ENSHCOG00000013366	r3hdm1	86	67.925	Hippocampus_comes
ENSIPUG00000001676	R3HDM1	99	66.029	ENSSTOG00000007572	R3HDM1	99	70.508	Ictidomys_tridecemlineatus
ENSIPUG00000001676	R3HDM1	94	74.425	ENSLACG00000005334	R3HDM1	80	74.499	Latimeria_chalumnae
ENSIPUG00000001676	R3HDM1	99	73.621	ENSLOCG00000001641	r3hdm1	90	65.984	Lepisosteus_oculatus
ENSIPUG00000001676	R3HDM1	99	65.789	ENSLAFG00000009065	R3HDM1	86	62.429	Loxodonta_africana
ENSIPUG00000001676	R3HDM1	98	58.632	ENSMFAG00000030331	R3HDM1	82	73.668	Macaca_fascicularis
ENSIPUG00000001676	R3HDM1	99	56.591	ENSMMUG00000009844	R3HDM1	82	73.668	Macaca_mulatta
ENSIPUG00000001676	R3HDM1	98	58.526	ENSMNEG00000027793	R3HDM1	82	73.668	Macaca_nemestrina
ENSIPUG00000001676	R3HDM1	98	58.632	ENSMLEG00000043189	R3HDM1	82	73.668	Mandrillus_leucophaeus
ENSIPUG00000001676	R3HDM1	100	62.716	ENSMAMG00000004532	r3hdm1	87	68.997	Mastacembelus_armatus
ENSIPUG00000001676	R3HDM1	100	62.530	ENSMZEG00005003157	r3hdm1	87	70.625	Maylandia_zebra
ENSIPUG00000001676	R3HDM1	99	65.865	ENSMGAG00000012461	R3HDM1	81	65.796	Meleagris_gallopavo
ENSIPUG00000001676	R3HDM1	99	65.550	ENSMAUG00000010315	R3hdm1	99	69.831	Mesocricetus_auratus
ENSIPUG00000001676	R3HDM1	99	66.029	ENSMICG00000005900	-	87	68.633	Microcebus_murinus
ENSIPUG00000001676	R3HDM1	99	55.579	ENSMICG00000042655	-	92	68.365	Microcebus_murinus
ENSIPUG00000001676	R3HDM1	52	59.475	ENSMOCG00000019833	-	99	69.492	Microtus_ochrogaster
ENSIPUG00000001676	R3HDM1	99	65.116	ENSMODG00000000923	R3HDM1	88	65.116	Monodelphis_domestica
ENSIPUG00000001676	R3HDM1	100	63.793	ENSMALG00000009000	r3hdm1	83	63.070	Monopterus_albus
ENSIPUG00000001676	R3HDM1	99	65.476	MGP_CAROLIEiJ_G0014543	R3hdm1	100	69.355	Mus_caroli
ENSIPUG00000001676	R3HDM1	99	65.476	ENSMUSG00000056211	R3hdm1	100	69.355	Mus_musculus
ENSIPUG00000001676	R3HDM1	99	65.476	MGP_PahariEiJ_G0027779	R3hdm1	100	69.355	Mus_pahari
ENSIPUG00000001676	R3HDM1	99	65.476	MGP_SPRETEiJ_G0015350	R3hdm1	100	69.355	Mus_spretus
ENSIPUG00000001676	R3HDM1	99	66.507	ENSMPUG00000002412	R3HDM1	81	66.587	Mustela_putorius_furo
ENSIPUG00000001676	R3HDM1	99	66.268	ENSMLUG00000013824	R3HDM1	81	66.348	Myotis_lucifugus
ENSIPUG00000001676	R3HDM1	98	58.842	ENSNLEG00000008622	R3HDM1	87	68.365	Nomascus_leucogenys
ENSIPUG00000001676	R3HDM1	94	59.908	ENSMEUG00000011784	R3HDM1	93	58.065	Notamacropus_eugenii
ENSIPUG00000001676	R3HDM1	99	65.000	ENSODEG00000008607	R3HDM1	99	68.814	Octodon_degus
ENSIPUG00000001676	R3HDM1	96	50.667	ENSONIG00000012017	r3hdm1	82	64.456	Oreochromis_niloticus
ENSIPUG00000001676	R3HDM1	99	57.372	ENSOANG00000007987	R3HDM1	81	66.110	Ornithorhynchus_anatinus
ENSIPUG00000001676	R3HDM1	99	65.000	ENSOCUG00000017366	R3HDM1	89	65.155	Oryctolagus_cuniculus
ENSIPUG00000001676	R3HDM1	100	58.998	ENSORLG00000004297	r3hdm1	86	69.811	Oryzias_latipes
ENSIPUG00000001676	R3HDM1	100	59.226	ENSORLG00015017355	r3hdm1	84	70.126	Oryzias_latipes_hsok
ENSIPUG00000001676	R3HDM1	50	61.181	ENSOMEG00000003882	-	83	61.957	Oryzias_melastigma
ENSIPUG00000001676	R3HDM1	99	65.865	ENSOGAG00000003136	R3HDM1	81	65.947	Otolemur_garnettii
ENSIPUG00000001676	R3HDM1	99	66.746	ENSOARG00000010788	R3HDM1	81	66.826	Ovis_aries
ENSIPUG00000001676	R3HDM1	98	58.613	ENSPPAG00000027858	R3HDM1	82	73.668	Pan_paniscus
ENSIPUG00000001676	R3HDM1	99	66.507	ENSPPRG00000002626	R3HDM1	87	68.901	Panthera_pardus
ENSIPUG00000001676	R3HDM1	99	66.507	ENSPTIG00000016581	R3HDM1	87	68.901	Panthera_tigris_altaica
ENSIPUG00000001676	R3HDM1	98	58.613	ENSPTRG00000012494	R3HDM1	82	73.668	Pan_troglodytes
ENSIPUG00000001676	R3HDM1	98	58.632	ENSPANG00000026448	R3HDM1	82	73.668	Papio_anubis
ENSIPUG00000001676	R3HDM1	99	66.056	ENSPKIG00000004328	r3hdm1	83	75.556	Paramormyrops_kingsleyae
ENSIPUG00000001676	R3HDM1	55	63.477	ENSPKIG00000011224	R3HDM1	91	68.080	Paramormyrops_kingsleyae
ENSIPUG00000001676	R3HDM1	99	65.714	ENSPSIG00000012915	R3HDM1	81	65.871	Pelodiscus_sinensis
ENSIPUG00000001676	R3HDM1	99	65.072	ENSPEMG00000015187	R3hdm1	99	69.492	Peromyscus_maniculatus_bairdii
ENSIPUG00000001676	R3HDM1	96	41.809	ENSPMAG00000003369	-	82	58.967	Petromyzon_marinus
ENSIPUG00000001676	R3HDM1	99	60.883	ENSPCIG00000002491	R3HDM1	81	72.093	Phascolarctos_cinereus
ENSIPUG00000001676	R3HDM1	100	59.709	ENSPFOG00000015036	r3hdm1	92	59.574	Poecilia_formosa
ENSIPUG00000001676	R3HDM1	100	51.919	ENSPLAG00000018042	r3hdm1	100	51.168	Poecilia_latipinna
ENSIPUG00000001676	R3HDM1	100	51.972	ENSPMEG00000023947	r3hdm1	100	51.220	Poecilia_mexicana
ENSIPUG00000001676	R3HDM1	100	61.425	ENSPREG00000007902	r3hdm1	86	70.032	Poecilia_reticulata
ENSIPUG00000001676	R3HDM1	99	55.941	ENSPPYG00000012815	R3HDM1	89	56.250	Pongo_abelii
ENSIPUG00000001676	R3HDM1	94	59.908	ENSPCAG00000006208	R3HDM1	66	71.053	Procavia_capensis
ENSIPUG00000001676	R3HDM1	85	78.309	ENSPCOG00000012698	R3HDM1	74	78.388	Propithecus_coquereli
ENSIPUG00000001676	R3HDM1	99	49.654	ENSPVAG00000006098	R3HDM1	81	60.143	Pteropus_vampyrus
ENSIPUG00000001676	R3HDM1	91	77.259	ENSPNAG00000013952	r3hdm1	82	77.326	Pygocentrus_nattereri
ENSIPUG00000001676	R3HDM1	85	86.039	ENSPNAG00000005436	R3HDM1	87	85.993	Pygocentrus_nattereri
ENSIPUG00000001676	R3HDM1	52	55.952	ENSPNAG00000004162	arpp21	90	36.691	Pygocentrus_nattereri
ENSIPUG00000001676	R3HDM1	99	65.476	ENSRNOG00000004099	R3hdm1	89	55.396	Rattus_norvegicus
ENSIPUG00000001676	R3HDM1	98	57.248	ENSRBIG00000033317	R3HDM1	86	79.121	Rhinopithecus_bieti
ENSIPUG00000001676	R3HDM1	99	58.799	ENSRROG00000034534	R3HDM1	82	73.981	Rhinopithecus_roxellana
ENSIPUG00000001676	R3HDM1	91	73.913	ENSSBOG00000020389	R3HDM1	82	73.668	Saimiri_boliviensis_boliviensis
ENSIPUG00000001676	R3HDM1	99	60.372	ENSSHAG00000016999	R3HDM1	88	60.436	Sarcophilus_harrisii
ENSIPUG00000001676	R3HDM1	100	77.000	ENSSFOG00015014134	r3hdm1	89	69.827	Scleropages_formosus
ENSIPUG00000001676	R3HDM1	100	64.350	ENSSFOG00015019851	-	95	63.237	Scleropages_formosus
ENSIPUG00000001676	R3HDM1	100	50.588	ENSSMAG00000001669	r3hdm1	90	50.849	Scophthalmus_maximus
ENSIPUG00000001676	R3HDM1	100	51.131	ENSSDUG00000010749	r3hdm1	100	52.243	Seriola_dumerili
ENSIPUG00000001676	R3HDM1	96	50.861	ENSSLDG00000004499	r3hdm1	82	54.634	Seriola_lalandi_dorsalis
ENSIPUG00000001676	R3HDM1	62	57.282	ENSSARG00000000352	-	53	57.282	Sorex_araneus
ENSIPUG00000001676	R3HDM1	99	59.104	ENSSPUG00000004167	R3HDM1	81	65.952	Sphenodon_punctatus
ENSIPUG00000001676	R3HDM1	100	52.161	ENSSPAG00000004648	r3hdm1	100	52.700	Stegastes_partitus
ENSIPUG00000001676	R3HDM1	99	66.029	ENSSSCG00000015692	R3HDM1	87	66.129	Sus_scrofa
ENSIPUG00000001676	R3HDM1	99	66.429	ENSTGUG00000011750	R3HDM1	81	66.271	Taeniopygia_guttata
ENSIPUG00000001676	R3HDM1	89	70.358	ENSTRUG00000011654	r3hdm1	85	69.811	Takifugu_rubripes
ENSIPUG00000001676	R3HDM1	94	65.254	ENSTNIG00000010362	r3hdm1	86	64.932	Tetraodon_nigroviridis
ENSIPUG00000001676	R3HDM1	99	54.038	ENSTTRG00000003935	R3HDM1	81	62.440	Tursiops_truncatus
ENSIPUG00000001676	R3HDM1	84	64.109	ENSUAMG00000024806	R3HDM1	93	68.901	Ursus_americanus
ENSIPUG00000001676	R3HDM1	99	59.751	ENSUMAG00000005552	R3HDM1	87	68.901	Ursus_maritimus
ENSIPUG00000001676	R3HDM1	89	57.604	ENSVPAG00000007333	R3HDM1	66	74.909	Vicugna_pacos
ENSIPUG00000001676	R3HDM1	99	66.507	ENSVVUG00000006457	R3HDM1	82	66.587	Vulpes_vulpes
ENSIPUG00000001676	R3HDM1	99	54.771	ENSXETG00000019330	r3hdm1	99	55.865	Xenopus_tropicalis
ENSIPUG00000001676	R3HDM1	74	69.903	ENSXCOG00000017448	r3hdm1	80	69.375	Xiphophorus_couchianus
ENSIPUG00000001676	R3HDM1	100	59.753	ENSXMAG00000007885	r3hdm1	83	70.032	Xiphophorus_maculatus