EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000002312 (Gene tree)
Gene ID: 108265330
Gene Symbol: LSM1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 5009 bases
Position: chr5:995010-1000018
Accession: 108265330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000003254	LSM	PF01423.22	1.3e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000003416	-	2846	XM_017467533	ENSIPUP00000003254	133 (aa)	XP_017323022	W5U936

Gene Model

Click here to download ENSIPUG00000002312's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002312's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000002312	LSM1	53	32.394	ENSIPUG00000019811	NAA38	74	32.394

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002312	LSM1	100	84.962	ENSG00000175324	LSM1	100	84.962	Homo_sapiens
ENSIPUG00000002312	LSM1	100	80.451	ENSAPOG00000010833	lsm1	100	80.451	Acanthochromis_polyacanthus
ENSIPUG00000002312	LSM1	100	84.962	ENSAMEG00000011141	LSM1	100	84.962	Ailuropoda_melanoleuca
ENSIPUG00000002312	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSIPUG00000002312	LSM1	100	80.451	ENSAOCG00000017997	-	100	80.451	Amphiprion_ocellaris
ENSIPUG00000002312	LSM1	100	80.451	ENSAOCG00000017096	lsm1	100	80.451	Amphiprion_ocellaris
ENSIPUG00000002312	LSM1	100	80.451	ENSAPEG00000011669	lsm1	100	80.451	Amphiprion_percula
ENSIPUG00000002312	LSM1	100	81.955	ENSATEG00000022266	lsm1	100	81.955	Anabas_testudineus
ENSIPUG00000002312	LSM1	100	84.962	ENSANAG00000027785	LSM1	100	84.962	Aotus_nancymaae
ENSIPUG00000002312	LSM1	100	81.955	ENSACLG00000011400	lsm1	100	81.955	Astatotilapia_calliptera
ENSIPUG00000002312	LSM1	100	96.992	ENSAMXG00000005441	lsm1	100	96.992	Astyanax_mexicanus
ENSIPUG00000002312	LSM1	100	84.211	ENSBTAG00000001612	LSM1	100	84.211	Bos_taurus
ENSIPUG00000002312	LSM1	87	50.847	WBGene00003076	lsm-1	90	50.847	Caenorhabditis_elegans
ENSIPUG00000002312	LSM1	100	84.211	ENSCJAG00000048015	LSM1	100	84.211	Callithrix_jacchus
ENSIPUG00000002312	LSM1	100	84.962	ENSCAFG00000006113	LSM1	100	84.962	Canis_familiaris
ENSIPUG00000002312	LSM1	100	84.962	ENSCAFG00020001822	LSM1	100	84.962	Canis_lupus_dingo
ENSIPUG00000002312	LSM1	100	84.962	ENSCHIG00000013194	LSM1	100	84.962	Capra_hircus
ENSIPUG00000002312	LSM1	100	84.962	ENSTSYG00000010394	LSM1	100	84.962	Carlito_syrichta
ENSIPUG00000002312	LSM1	100	84.962	ENSCPOG00000032671	LSM1	100	84.962	Cavia_porcellus
ENSIPUG00000002312	LSM1	100	84.962	ENSCCAG00000037171	LSM1	100	84.962	Cebus_capucinus
ENSIPUG00000002312	LSM1	100	84.962	ENSCATG00000020377	LSM1	100	84.962	Cercocebus_atys
ENSIPUG00000002312	LSM1	100	84.962	ENSCLAG00000001137	LSM1	100	84.962	Chinchilla_lanigera
ENSIPUG00000002312	LSM1	100	84.962	ENSCSAG00000015485	LSM1	100	84.962	Chlorocebus_sabaeus
ENSIPUG00000002312	LSM1	100	84.962	ENSCHOG00000006030	LSM1	100	84.962	Choloepus_hoffmanni
ENSIPUG00000002312	LSM1	95	80.315	ENSCPBG00000006569	LSM1	86	80.315	Chrysemys_picta_bellii
ENSIPUG00000002312	LSM1	100	67.669	ENSCING00000013536	-	100	67.669	Ciona_intestinalis
ENSIPUG00000002312	LSM1	100	84.962	ENSCANG00000019173	LSM1	100	84.962	Colobus_angolensis_palliatus
ENSIPUG00000002312	LSM1	80	74.775	ENSCGRG00001002259	-	97	74.775	Cricetulus_griseus_chok1gshd
ENSIPUG00000002312	LSM1	100	84.211	ENSCGRG00001024560	-	100	84.211	Cricetulus_griseus_chok1gshd
ENSIPUG00000002312	LSM1	100	84.211	ENSCGRG00000006554	-	100	84.211	Cricetulus_griseus_crigri
ENSIPUG00000002312	LSM1	80	74.775	ENSCGRG00000013603	-	97	74.775	Cricetulus_griseus_crigri
ENSIPUG00000002312	LSM1	100	81.203	ENSCSEG00000008319	lsm1	92	81.203	Cynoglossus_semilaevis
ENSIPUG00000002312	LSM1	100	81.955	ENSCSEG00000010570	lsm1	92	81.955	Cynoglossus_semilaevis
ENSIPUG00000002312	LSM1	100	82.707	ENSCVAG00000003871	lsm1	100	82.707	Cyprinodon_variegatus
ENSIPUG00000002312	LSM1	100	97.744	ENSDARG00000043177	lsm1	100	97.744	Danio_rerio
ENSIPUG00000002312	LSM1	89	67.227	ENSDNOG00000046620	-	100	67.227	Dasypus_novemcinctus
ENSIPUG00000002312	LSM1	100	84.211	ENSDNOG00000032911	-	100	84.211	Dasypus_novemcinctus
ENSIPUG00000002312	LSM1	100	84.962	ENSDNOG00000046387	-	100	84.962	Dasypus_novemcinctus
ENSIPUG00000002312	LSM1	99	81.061	ENSDNOG00000030989	-	99	81.061	Dasypus_novemcinctus
ENSIPUG00000002312	LSM1	100	84.962	ENSDORG00000028172	Lsm1	100	84.962	Dipodomys_ordii
ENSIPUG00000002312	LSM1	100	58.647	FBgn0261067	LSm1	97	58.647	Drosophila_melanogaster
ENSIPUG00000002312	LSM1	100	84.211	ENSEASG00005016677	LSM1	100	84.211	Equus_asinus_asinus
ENSIPUG00000002312	LSM1	100	84.211	ENSECAG00000010461	LSM1	100	84.211	Equus_caballus
ENSIPUG00000002312	LSM1	72	81.250	ENSEEUG00000015181	LSM1	97	81.250	Erinaceus_europaeus
ENSIPUG00000002312	LSM1	100	75.188	ENSELUG00000023374	lsm1	100	75.188	Esox_lucius
ENSIPUG00000002312	LSM1	100	82.707	ENSELUG00000002322	lsm1	100	82.707	Esox_lucius
ENSIPUG00000002312	LSM1	100	84.962	ENSFCAG00000039335	LSM1	100	84.962	Felis_catus
ENSIPUG00000002312	LSM1	89	85.593	ENSFALG00000006723	LSM1	100	85.593	Ficedula_albicollis
ENSIPUG00000002312	LSM1	100	84.962	ENSFDAG00000007658	LSM1	100	84.962	Fukomys_damarensis
ENSIPUG00000002312	LSM1	100	82.707	ENSFHEG00000009556	lsm1	100	82.707	Fundulus_heteroclitus
ENSIPUG00000002312	LSM1	100	81.955	ENSGMOG00000016651	lsm1	98	81.955	Gadus_morhua
ENSIPUG00000002312	LSM1	100	85.714	ENSGALG00000003245	LSM1	100	85.714	Gallus_gallus
ENSIPUG00000002312	LSM1	100	82.707	ENSGAFG00000011355	lsm1	100	82.707	Gambusia_affinis
ENSIPUG00000002312	LSM1	100	81.955	ENSGACG00000011763	lsm1	98	81.955	Gasterosteus_aculeatus
ENSIPUG00000002312	LSM1	100	87.218	ENSGAGG00000024065	LSM1	100	87.218	Gopherus_agassizii
ENSIPUG00000002312	LSM1	100	84.962	ENSGGOG00000022658	LSM1	100	84.962	Gorilla_gorilla
ENSIPUG00000002312	LSM1	100	81.955	ENSHBUG00000010897	lsm1	100	81.955	Haplochromis_burtoni
ENSIPUG00000002312	LSM1	100	66.165	ENSHGLG00000017574	-	100	66.165	Heterocephalus_glaber_female
ENSIPUG00000002312	LSM1	100	84.962	ENSHGLG00000005711	LSM1	100	84.962	Heterocephalus_glaber_female
ENSIPUG00000002312	LSM1	100	84.962	ENSHGLG00100017660	LSM1	100	84.962	Heterocephalus_glaber_male
ENSIPUG00000002312	LSM1	100	66.165	ENSHGLG00100012152	-	100	66.165	Heterocephalus_glaber_male
ENSIPUG00000002312	LSM1	100	80.451	ENSHCOG00000017233	lsm1	100	80.451	Hippocampus_comes
ENSIPUG00000002312	LSM1	62	90.361	ENSSTOG00000026870	LSM1	100	90.361	Ictidomys_tridecemlineatus
ENSIPUG00000002312	LSM1	100	83.459	ENSJJAG00000014605	-	100	83.459	Jaculus_jaculus
ENSIPUG00000002312	LSM1	100	81.955	ENSKMAG00000003016	lsm1	100	81.955	Kryptolebias_marmoratus
ENSIPUG00000002312	LSM1	100	81.955	ENSLBEG00000022352	lsm1	100	81.955	Labrus_bergylta
ENSIPUG00000002312	LSM1	89	80.508	ENSLACG00000010947	LSM1	98	80.508	Latimeria_chalumnae
ENSIPUG00000002312	LSM1	100	84.962	ENSLOCG00000015149	lsm1	100	84.962	Lepisosteus_oculatus
ENSIPUG00000002312	LSM1	100	84.962	ENSLAFG00000003534	LSM1	100	84.962	Loxodonta_africana
ENSIPUG00000002312	LSM1	100	84.962	ENSMFAG00000032661	LSM1	100	84.962	Macaca_fascicularis
ENSIPUG00000002312	LSM1	100	84.962	ENSMLEG00000034535	LSM1	100	84.962	Mandrillus_leucophaeus
ENSIPUG00000002312	LSM1	100	82.707	ENSMAMG00000007464	lsm1	100	82.707	Mastacembelus_armatus
ENSIPUG00000002312	LSM1	100	81.955	ENSMZEG00005010321	lsm1	100	81.955	Maylandia_zebra
ENSIPUG00000002312	LSM1	100	85.714	ENSMGAG00000002125	LSM1	100	85.714	Meleagris_gallopavo
ENSIPUG00000002312	LSM1	100	84.962	ENSMICG00000030726	LSM1	100	84.962	Microcebus_murinus
ENSIPUG00000002312	LSM1	100	84.211	ENSMOCG00000022817	Lsm1	100	84.211	Microtus_ochrogaster
ENSIPUG00000002312	LSM1	100	81.203	ENSMMOG00000015466	lsm1	100	81.203	Mola_mola
ENSIPUG00000002312	LSM1	100	86.466	ENSMODG00000010732	-	100	86.466	Monodelphis_domestica
ENSIPUG00000002312	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSIPUG00000002312	LSM1	100	82.707	MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	Mus_caroli
ENSIPUG00000002312	LSM1	100	82.707	ENSMUSG00000037296	Lsm1	91	94.872	Mus_musculus
ENSIPUG00000002312	LSM1	100	82.707	MGP_PahariEiJ_G0021400	Lsm1	100	82.707	Mus_pahari
ENSIPUG00000002312	LSM1	100	82.707	MGP_SPRETEiJ_G0032049	Lsm1	100	82.707	Mus_spretus
ENSIPUG00000002312	LSM1	100	85.714	ENSMPUG00000009883	LSM1	100	85.714	Mustela_putorius_furo
ENSIPUG00000002312	LSM1	100	84.962	ENSMLUG00000003734	LSM1	100	84.962	Myotis_lucifugus
ENSIPUG00000002312	LSM1	100	84.211	ENSNGAG00000003753	Lsm1	100	84.211	Nannospalax_galili
ENSIPUG00000002312	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSIPUG00000002312	LSM1	100	84.962	ENSNLEG00000029390	LSM1	100	84.962	Nomascus_leucogenys
ENSIPUG00000002312	LSM1	100	86.466	ENSMEUG00000014077	LSM1	100	86.466	Notamacropus_eugenii
ENSIPUG00000002312	LSM1	88	83.761	ENSOPRG00000000333	LSM1	100	83.761	Ochotona_princeps
ENSIPUG00000002312	LSM1	100	84.962	ENSODEG00000004834	LSM1	100	84.962	Octodon_degus
ENSIPUG00000002312	LSM1	100	81.955	ENSONIG00000010782	lsm1	100	81.955	Oreochromis_niloticus
ENSIPUG00000002312	LSM1	100	86.466	ENSOANG00000003256	LSM1	100	86.466	Ornithorhynchus_anatinus
ENSIPUG00000002312	LSM1	100	84.962	ENSOCUG00000015399	LSM1	100	84.962	Oryctolagus_cuniculus
ENSIPUG00000002312	LSM1	100	83.459	ENSORLG00000030288	lsm1	100	83.459	Oryzias_latipes
ENSIPUG00000002312	LSM1	100	83.459	ENSORLG00020003941	lsm1	100	83.459	Oryzias_latipes_hni
ENSIPUG00000002312	LSM1	100	84.962	ENSORLG00020006213	-	86	84.962	Oryzias_latipes_hni
ENSIPUG00000002312	LSM1	100	83.459	ENSORLG00015018350	lsm1	100	83.459	Oryzias_latipes_hsok
ENSIPUG00000002312	LSM1	100	82.707	ENSOMEG00000012454	lsm1	100	82.707	Oryzias_melastigma
ENSIPUG00000002312	LSM1	100	84.962	ENSOGAG00000015161	LSM1	100	84.962	Otolemur_garnettii
ENSIPUG00000002312	LSM1	100	84.962	ENSOARG00000001317	LSM1	100	84.962	Ovis_aries
ENSIPUG00000002312	LSM1	100	84.962	ENSPPAG00000032279	LSM1	100	84.962	Pan_paniscus
ENSIPUG00000002312	LSM1	100	84.962	ENSPPRG00000014172	-	100	84.962	Panthera_pardus
ENSIPUG00000002312	LSM1	100	84.962	ENSPTIG00000010289	LSM1	100	84.962	Panthera_tigris_altaica
ENSIPUG00000002312	LSM1	100	84.962	ENSPTRG00000020169	LSM1	100	84.962	Pan_troglodytes
ENSIPUG00000002312	LSM1	100	84.962	ENSPANG00000008814	LSM1	100	84.962	Papio_anubis
ENSIPUG00000002312	LSM1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSIPUG00000002312	LSM1	100	81.955	ENSPKIG00000001839	lsm1	100	81.955	Paramormyrops_kingsleyae
ENSIPUG00000002312	LSM1	97	81.395	ENSPSIG00000012563	LSM1	98	81.395	Pelodiscus_sinensis
ENSIPUG00000002312	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSIPUG00000002312	LSM1	85	73.451	ENSPMAG00000002671	lsm1	100	73.451	Petromyzon_marinus
ENSIPUG00000002312	LSM1	100	85.714	ENSPCIG00000008880	LSM1	100	85.714	Phascolarctos_cinereus
ENSIPUG00000002312	LSM1	100	82.707	ENSPFOG00000016029	lsm1	100	82.707	Poecilia_formosa
ENSIPUG00000002312	LSM1	100	82.707	ENSPLAG00000007879	lsm1	100	82.707	Poecilia_latipinna
ENSIPUG00000002312	LSM1	100	82.707	ENSPMEG00000023550	lsm1	100	82.707	Poecilia_mexicana
ENSIPUG00000002312	LSM1	100	82.707	ENSPREG00000009574	lsm1	100	82.707	Poecilia_reticulata
ENSIPUG00000002312	LSM1	100	84.962	ENSPPYG00000018521	LSM1	100	84.962	Pongo_abelii
ENSIPUG00000002312	LSM1	100	84.962	ENSPCOG00000020901	-	100	84.962	Propithecus_coquereli
ENSIPUG00000002312	LSM1	100	84.962	ENSPVAG00000006016	LSM1	100	84.962	Pteropus_vampyrus
ENSIPUG00000002312	LSM1	100	81.955	ENSPNYG00000018067	lsm1	100	81.955	Pundamilia_nyererei
ENSIPUG00000002312	LSM1	100	96.241	ENSPNAG00000013707	lsm1	100	96.241	Pygocentrus_nattereri
ENSIPUG00000002312	LSM1	100	83.459	ENSRNOG00000015375	Lsm1	100	83.459	Rattus_norvegicus
ENSIPUG00000002312	LSM1	100	84.962	ENSRBIG00000027449	LSM1	100	84.962	Rhinopithecus_bieti
ENSIPUG00000002312	LSM1	100	84.962	ENSRROG00000036074	LSM1	100	84.962	Rhinopithecus_roxellana
ENSIPUG00000002312	LSM1	95	43.411	YJL124C	LSM1	72	43.411	Saccharomyces_cerevisiae
ENSIPUG00000002312	LSM1	100	86.466	ENSSHAG00000017260	LSM1	100	86.466	Sarcophilus_harrisii
ENSIPUG00000002312	LSM1	100	81.203	ENSSFOG00015019528	lsm1	100	81.203	Scleropages_formosus
ENSIPUG00000002312	LSM1	100	81.955	ENSSMAG00000004930	lsm1	100	81.955	Scophthalmus_maximus
ENSIPUG00000002312	LSM1	100	81.203	ENSSDUG00000021823	lsm1	100	81.203	Seriola_dumerili
ENSIPUG00000002312	LSM1	100	81.203	ENSSLDG00000012154	lsm1	100	81.203	Seriola_lalandi_dorsalis
ENSIPUG00000002312	LSM1	100	87.218	ENSSPUG00000014878	LSM1	100	87.218	Sphenodon_punctatus
ENSIPUG00000002312	LSM1	100	81.203	ENSSPAG00000020548	lsm1	100	81.203	Stegastes_partitus
ENSIPUG00000002312	LSM1	100	84.962	ENSSSCG00000039058	LSM1	100	84.962	Sus_scrofa
ENSIPUG00000002312	LSM1	100	87.218	ENSTGUG00000004793	LSM1	100	87.218	Taeniopygia_guttata
ENSIPUG00000002312	LSM1	100	84.962	ENSTRUG00000025239	lsm1	100	84.962	Takifugu_rubripes
ENSIPUG00000002312	LSM1	100	83.459	ENSTNIG00000004055	lsm1	100	83.459	Tetraodon_nigroviridis
ENSIPUG00000002312	LSM1	88	81.197	ENSTBEG00000015884	LSM1	100	81.197	Tupaia_belangeri
ENSIPUG00000002312	LSM1	100	84.962	ENSTTRG00000004482	LSM1	100	84.962	Tursiops_truncatus
ENSIPUG00000002312	LSM1	100	84.962	ENSUAMG00000004103	LSM1	100	84.962	Ursus_americanus
ENSIPUG00000002312	LSM1	100	84.962	ENSUMAG00000009132	LSM1	100	84.962	Ursus_maritimus
ENSIPUG00000002312	LSM1	58	94.805	ENSVPAG00000011593	LSM1	100	94.805	Vicugna_pacos
ENSIPUG00000002312	LSM1	61	67.901	ENSVVUG00000014880	-	86	67.901	Vulpes_vulpes
ENSIPUG00000002312	LSM1	100	84.962	ENSVVUG00000020191	LSM1	100	84.962	Vulpes_vulpes
ENSIPUG00000002312	LSM1	100	81.752	ENSXETG00000009004	lsm1	100	81.752	Xenopus_tropicalis
ENSIPUG00000002312	LSM1	100	83.459	ENSXCOG00000015631	lsm1	100	83.459	Xiphophorus_couchianus
ENSIPUG00000002312	LSM1	100	83.459	ENSXMAG00000026637	lsm1	100	83.459	Xiphophorus_maculatus