EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000002470 (Gene tree)
Gene ID: 108265570
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 6778 bases
Position: chr5:1102577-1109354
Accession: 108265570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000003514	PRP21_like_P	PF12230.8	2.8e-54	1	1
ENSIPUP00000003514	Surp	PF01805.20	6.9e-45	1	2
ENSIPUP00000003514	Surp	PF01805.20	6.9e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000003688	-	2325	XM_017468060	ENSIPUP00000003514	774 (aa)	XP_017323549	-

Gene Model

Click here to download ENSIPUG00000002470's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002470's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002470	sf3a1	98	83.464	ENSG00000099995	SF3A1	96	82.682	Homo_sapiens
ENSIPUG00000002470	sf3a1	98	87.630	ENSAPOG00000020465	sf3a1	98	86.788	Acanthochromis_polyacanthus
ENSIPUG00000002470	sf3a1	98	82.682	ENSAMEG00000007737	SF3A1	96	82.422	Ailuropoda_melanoleuca
ENSIPUG00000002470	sf3a1	99	86.788	ENSACIG00000020672	sf3a1	98	86.269	Amphilophus_citrinellus
ENSIPUG00000002470	sf3a1	98	87.630	ENSAOCG00000003060	sf3a1	98	86.788	Amphiprion_ocellaris
ENSIPUG00000002470	sf3a1	98	87.500	ENSAPEG00000010735	sf3a1	98	86.658	Amphiprion_percula
ENSIPUG00000002470	sf3a1	98	86.104	ENSATEG00000021201	sf3a1	97	85.584	Anabas_testudineus
ENSIPUG00000002470	sf3a1	97	82.632	ENSAPLG00000009057	SF3A1	100	81.386	Anas_platyrhynchos
ENSIPUG00000002470	sf3a1	99	80.862	ENSACAG00000009415	SF3A1	97	79.721	Anolis_carolinensis
ENSIPUG00000002470	sf3a1	98	82.682	ENSANAG00000032045	SF3A1	96	82.422	Aotus_nancymaae
ENSIPUG00000002470	sf3a1	99	85.214	ENSACLG00000012622	sf3a1	98	85.344	Astatotilapia_calliptera
ENSIPUG00000002470	sf3a1	99	91.473	ENSAMXG00000005382	sf3a1	98	91.602	Astyanax_mexicanus
ENSIPUG00000002470	sf3a1	98	82.812	ENSBTAG00000003390	SF3A1	96	82.552	Bos_taurus
ENSIPUG00000002470	sf3a1	83	45.269	WBGene00004188	prp-21	100	42.289	Caenorhabditis_elegans
ENSIPUG00000002470	sf3a1	98	82.812	ENSCJAG00000010370	SF3A1	96	82.552	Callithrix_jacchus
ENSIPUG00000002470	sf3a1	98	82.682	ENSCAFG00000012559	SF3A1	96	82.422	Canis_familiaris
ENSIPUG00000002470	sf3a1	98	82.682	ENSCAFG00020000838	SF3A1	96	82.422	Canis_lupus_dingo
ENSIPUG00000002470	sf3a1	98	82.682	ENSCHIG00000018642	SF3A1	96	82.422	Capra_hircus
ENSIPUG00000002470	sf3a1	98	82.682	ENSTSYG00000004739	SF3A1	96	82.422	Carlito_syrichta
ENSIPUG00000002470	sf3a1	95	66.176	ENSCAPG00000015414	SF3A1	97	65.775	Cavia_aperea
ENSIPUG00000002470	sf3a1	98	83.464	ENSCPOG00000014589	SF3A1	96	82.552	Cavia_porcellus
ENSIPUG00000002470	sf3a1	98	82.682	ENSCCAG00000032006	SF3A1	96	82.422	Cebus_capucinus
ENSIPUG00000002470	sf3a1	98	82.943	ENSCATG00000029241	SF3A1	96	82.682	Cercocebus_atys
ENSIPUG00000002470	sf3a1	98	82.812	ENSCLAG00000006508	SF3A1	96	82.552	Chinchilla_lanigera
ENSIPUG00000002470	sf3a1	98	82.943	ENSCSAG00000009470	SF3A1	96	82.682	Chlorocebus_sabaeus
ENSIPUG00000002470	sf3a1	59	89.015	ENSCHOG00000005201	SF3A1	64	88.636	Choloepus_hoffmanni
ENSIPUG00000002470	sf3a1	99	81.582	ENSCPBG00000007595	SF3A1	97	81.323	Chrysemys_picta_bellii
ENSIPUG00000002470	sf3a1	98	52.551	ENSCING00000008526	-	97	52.051	Ciona_intestinalis
ENSIPUG00000002470	sf3a1	88	67.266	ENSCSAVG00000005608	-	88	66.429	Ciona_savignyi
ENSIPUG00000002470	sf3a1	98	82.943	ENSCANG00000033564	SF3A1	96	82.682	Colobus_angolensis_palliatus
ENSIPUG00000002470	sf3a1	98	82.940	ENSCGRG00001008933	Sf3a1	96	82.552	Cricetulus_griseus_chok1gshd
ENSIPUG00000002470	sf3a1	98	82.940	ENSCGRG00000006127	Sf3a1	96	82.552	Cricetulus_griseus_crigri
ENSIPUG00000002470	sf3a1	98	86.086	ENSCSEG00000010792	sf3a1	97	85.436	Cynoglossus_semilaevis
ENSIPUG00000002470	sf3a1	99	84.974	ENSCVAG00000004560	sf3a1	98	84.197	Cyprinodon_variegatus
ENSIPUG00000002470	sf3a1	99	87.840	ENSDARG00000041887	sf3a1	98	87.597	Danio_rerio
ENSIPUG00000002470	sf3a1	98	82.468	ENSDNOG00000010629	SF3A1	96	82.338	Dasypus_novemcinctus
ENSIPUG00000002470	sf3a1	98	83.203	ENSDORG00000005613	Sf3a1	96	82.422	Dipodomys_ordii
ENSIPUG00000002470	sf3a1	87	61.090	FBgn0266917	Sf3a1	97	51.361	Drosophila_melanogaster
ENSIPUG00000002470	sf3a1	86	80.179	ENSETEG00000017194	SF3A1	95	80.626	Echinops_telfairi
ENSIPUG00000002470	sf3a1	99	67.651	ENSEBUG00000001285	sf3a1	97	68.254	Eptatretus_burgeri
ENSIPUG00000002470	sf3a1	98	82.812	ENSEASG00005010254	SF3A1	96	82.552	Equus_asinus_asinus
ENSIPUG00000002470	sf3a1	98	82.812	ENSECAG00000023962	SF3A1	96	82.552	Equus_caballus
ENSIPUG00000002470	sf3a1	75	93.443	ENSEEUG00000003159	SF3A1	82	93.443	Erinaceus_europaeus
ENSIPUG00000002470	sf3a1	99	84.903	ENSELUG00000022578	sf3a1	98	85.290	Esox_lucius
ENSIPUG00000002470	sf3a1	98	82.812	ENSFCAG00000011932	SF3A1	96	82.552	Felis_catus
ENSIPUG00000002470	sf3a1	97	80.896	ENSFALG00000006944	SF3A1	97	80.804	Ficedula_albicollis
ENSIPUG00000002470	sf3a1	98	82.812	ENSFDAG00000009560	SF3A1	96	82.552	Fukomys_damarensis
ENSIPUG00000002470	sf3a1	99	85.659	ENSFHEG00000010866	sf3a1	98	85.271	Fundulus_heteroclitus
ENSIPUG00000002470	sf3a1	99	85.398	ENSGMOG00000016024	sf3a1	98	85.007	Gadus_morhua
ENSIPUG00000002470	sf3a1	97	82.740	ENSGALG00000007937	SF3A1	97	81.842	Gallus_gallus
ENSIPUG00000002470	sf3a1	99	85.530	ENSGAFG00000009111	sf3a1	98	84.755	Gambusia_affinis
ENSIPUG00000002470	sf3a1	98	85.509	ENSGACG00000011893	sf3a1	97	84.746	Gasterosteus_aculeatus
ENSIPUG00000002470	sf3a1	94	80.894	ENSGAGG00000000762	SF3A1	97	80.623	Gopherus_agassizii
ENSIPUG00000002470	sf3a1	98	83.464	ENSGGOG00000012631	SF3A1	96	82.682	Gorilla_gorilla
ENSIPUG00000002470	sf3a1	99	86.122	ENSHBUG00000015795	sf3a1	98	85.344	Haplochromis_burtoni
ENSIPUG00000002470	sf3a1	98	82.812	ENSHGLG00000007907	SF3A1	96	82.552	Heterocephalus_glaber_female
ENSIPUG00000002470	sf3a1	98	82.812	ENSHGLG00100013799	SF3A1	96	82.552	Heterocephalus_glaber_male
ENSIPUG00000002470	sf3a1	98	84.896	ENSHCOG00000015423	sf3a1	98	83.203	Hippocampus_comes
ENSIPUG00000002470	sf3a1	98	82.812	ENSSTOG00000013892	SF3A1	96	82.552	Ictidomys_tridecemlineatus
ENSIPUG00000002470	sf3a1	98	82.812	ENSJJAG00000022566	Sf3a1	96	82.552	Jaculus_jaculus
ENSIPUG00000002470	sf3a1	99	85.142	ENSKMAG00000002400	sf3a1	98	85.401	Kryptolebias_marmoratus
ENSIPUG00000002470	sf3a1	99	85.104	ENSLBEG00000022974	sf3a1	98	84.067	Labrus_bergylta
ENSIPUG00000002470	sf3a1	99	82.817	ENSLACG00000003565	SF3A1	97	82.558	Latimeria_chalumnae
ENSIPUG00000002470	sf3a1	99	87.339	ENSLOCG00000008251	sf3a1	98	87.597	Lepisosteus_oculatus
ENSIPUG00000002470	sf3a1	98	83.073	ENSLAFG00000000448	SF3A1	96	82.422	Loxodonta_africana
ENSIPUG00000002470	sf3a1	98	55.013	ENSLAFG00000026032	-	97	54.499	Loxodonta_africana
ENSIPUG00000002470	sf3a1	98	82.812	ENSMFAG00000031979	SF3A1	96	82.552	Macaca_fascicularis
ENSIPUG00000002470	sf3a1	98	82.812	ENSMMUG00000005547	SF3A1	96	82.552	Macaca_mulatta
ENSIPUG00000002470	sf3a1	98	82.943	ENSMNEG00000037229	SF3A1	96	82.682	Macaca_nemestrina
ENSIPUG00000002470	sf3a1	98	82.943	ENSMLEG00000041908	SF3A1	96	82.682	Mandrillus_leucophaeus
ENSIPUG00000002470	sf3a1	99	86.744	ENSMAMG00000006460	sf3a1	97	86.744	Mastacembelus_armatus
ENSIPUG00000002470	sf3a1	99	85.214	ENSMZEG00005009633	sf3a1	98	85.344	Maylandia_zebra
ENSIPUG00000002470	sf3a1	97	82.740	ENSMGAG00000001330	SF3A1	99	81.842	Meleagris_gallopavo
ENSIPUG00000002470	sf3a1	94	78.668	ENSMAUG00000020317	Sf3a1	94	78.397	Mesocricetus_auratus
ENSIPUG00000002470	sf3a1	98	82.943	ENSMICG00000010038	SF3A1	96	82.682	Microcebus_murinus
ENSIPUG00000002470	sf3a1	98	82.682	ENSMOCG00000008438	Sf3a1	96	82.422	Microtus_ochrogaster
ENSIPUG00000002470	sf3a1	99	83.974	ENSMMOG00000015588	sf3a1	99	83.590	Mola_mola
ENSIPUG00000002470	sf3a1	99	81.630	ENSMODG00000009270	SF3A1	97	82.147	Monodelphis_domestica
ENSIPUG00000002470	sf3a1	98	87.093	ENSMALG00000000148	sf3a1	99	86.431	Monopterus_albus
ENSIPUG00000002470	sf3a1	98	82.422	MGP_CAROLIEiJ_G0016029	Sf3a1	96	82.031	Mus_caroli
ENSIPUG00000002470	sf3a1	98	82.422	ENSMUSG00000002129	Sf3a1	96	82.031	Mus_musculus
ENSIPUG00000002470	sf3a1	98	82.292	MGP_PahariEiJ_G0016862	Sf3a1	96	81.901	Mus_pahari
ENSIPUG00000002470	sf3a1	98	82.422	MGP_SPRETEiJ_G0016870	Sf3a1	96	82.031	Mus_spretus
ENSIPUG00000002470	sf3a1	98	82.031	ENSMPUG00000013144	SF3A1	96	82.552	Mustela_putorius_furo
ENSIPUG00000002470	sf3a1	98	82.812	ENSMLUG00000002139	SF3A1	96	82.552	Myotis_lucifugus
ENSIPUG00000002470	sf3a1	98	83.203	ENSNGAG00000016977	Sf3a1	96	82.422	Nannospalax_galili
ENSIPUG00000002470	sf3a1	98	86.310	ENSNBRG00000016642	sf3a1	97	85.528	Neolamprologus_brichardi
ENSIPUG00000002470	sf3a1	98	82.943	ENSNLEG00000003686	SF3A1	96	82.682	Nomascus_leucogenys
ENSIPUG00000002470	sf3a1	94	75.204	ENSMEUG00000008741	SF3A1	96	74.251	Notamacropus_eugenii
ENSIPUG00000002470	sf3a1	98	82.682	ENSOPRG00000016636	SF3A1	96	82.422	Ochotona_princeps
ENSIPUG00000002470	sf3a1	99	82.300	ENSODEG00000002571	SF3A1	97	82.041	Octodon_degus
ENSIPUG00000002470	sf3a1	99	86.269	ENSONIG00000010848	sf3a1	98	85.492	Oreochromis_niloticus
ENSIPUG00000002470	sf3a1	98	82.682	ENSOCUG00000007633	SF3A1	96	82.422	Oryctolagus_cuniculus
ENSIPUG00000002470	sf3a1	94	84.060	ENSORLG00000013050	sf3a1	97	84.146	Oryzias_latipes
ENSIPUG00000002470	sf3a1	94	85.422	ENSORLG00020003236	sf3a1	93	84.553	Oryzias_latipes_hni
ENSIPUG00000002470	sf3a1	99	84.088	ENSORLG00015017411	sf3a1	98	84.347	Oryzias_latipes_hsok
ENSIPUG00000002470	sf3a1	99	85.473	ENSOMEG00000013362	sf3a1	98	84.955	Oryzias_melastigma
ENSIPUG00000002470	sf3a1	98	82.943	ENSOGAG00000012931	SF3A1	96	82.682	Otolemur_garnettii
ENSIPUG00000002470	sf3a1	98	81.510	ENSOARG00000006849	SF3A1	96	81.120	Ovis_aries
ENSIPUG00000002470	sf3a1	98	82.161	ENSPPAG00000041790	SF3A1	96	80.282	Pan_paniscus
ENSIPUG00000002470	sf3a1	98	82.812	ENSPPRG00000004391	SF3A1	96	82.552	Panthera_pardus
ENSIPUG00000002470	sf3a1	98	82.682	ENSPTIG00000000844	SF3A1	99	82.422	Panthera_tigris_altaica
ENSIPUG00000002470	sf3a1	98	83.464	ENSPTRG00000014240	SF3A1	96	82.682	Pan_troglodytes
ENSIPUG00000002470	sf3a1	98	82.943	ENSPANG00000020772	SF3A1	96	82.682	Papio_anubis
ENSIPUG00000002470	sf3a1	80	93.407	ENSPSIG00000012803	SF3A1	99	93.407	Pelodiscus_sinensis
ENSIPUG00000002470	sf3a1	98	84.444	ENSPMGG00000023096	sf3a1	100	83.922	Periophthalmus_magnuspinnatus
ENSIPUG00000002470	sf3a1	98	82.808	ENSPEMG00000009494	Sf3a1	96	82.422	Peromyscus_maniculatus_bairdii
ENSIPUG00000002470	sf3a1	67	81.870	ENSPMAG00000007139	-	97	76.420	Petromyzon_marinus
ENSIPUG00000002470	sf3a1	98	81.877	ENSPCIG00000022692	SF3A1	96	82.399	Phascolarctos_cinereus
ENSIPUG00000002470	sf3a1	94	79.432	ENSPFOG00000016768	sf3a1	93	79.026	Poecilia_formosa
ENSIPUG00000002470	sf3a1	99	85.806	ENSPLAG00000017268	sf3a1	98	85.419	Poecilia_latipinna
ENSIPUG00000002470	sf3a1	85	85.564	ENSPMEG00000019811	sf3a1	98	85.263	Poecilia_mexicana
ENSIPUG00000002470	sf3a1	99	85.659	ENSPREG00000010347	sf3a1	98	85.142	Poecilia_reticulata
ENSIPUG00000002470	sf3a1	98	82.943	ENSPPYG00000011707	SF3A1	96	82.682	Pongo_abelii
ENSIPUG00000002470	sf3a1	59	81.405	ENSPCAG00000003266	SF3A1	57	81.405	Procavia_capensis
ENSIPUG00000002470	sf3a1	98	82.943	ENSPCOG00000026630	SF3A1	96	82.682	Propithecus_coquereli
ENSIPUG00000002470	sf3a1	96	81.976	ENSPVAG00000017719	SF3A1	94	81.709	Pteropus_vampyrus
ENSIPUG00000002470	sf3a1	99	86.122	ENSPNYG00000018706	sf3a1	98	85.344	Pundamilia_nyererei
ENSIPUG00000002470	sf3a1	99	91.473	ENSPNAG00000003721	sf3a1	99	91.602	Pygocentrus_nattereri
ENSIPUG00000002470	sf3a1	98	82.552	ENSRNOG00000005218	Sf3a1	96	82.161	Rattus_norvegicus
ENSIPUG00000002470	sf3a1	98	82.943	ENSRBIG00000032167	SF3A1	96	82.682	Rhinopithecus_bieti
ENSIPUG00000002470	sf3a1	98	82.943	ENSRROG00000044908	SF3A1	96	82.682	Rhinopithecus_roxellana
ENSIPUG00000002470	sf3a1	94	82.497	ENSSBOG00000021960	SF3A1	98	82.432	Saimiri_boliviensis_boliviensis
ENSIPUG00000002470	sf3a1	98	79.400	ENSSHAG00000003666	SF3A1	97	80.052	Sarcophilus_harrisii
ENSIPUG00000002470	sf3a1	99	88.228	ENSSFOG00015004579	sf3a1	98	88.486	Scleropages_formosus
ENSIPUG00000002470	sf3a1	98	85.417	ENSSMAG00000004275	sf3a1	97	85.286	Scophthalmus_maximus
ENSIPUG00000002470	sf3a1	99	87.306	ENSSDUG00000022219	sf3a1	97	86.849	Seriola_dumerili
ENSIPUG00000002470	sf3a1	99	87.306	ENSSLDG00000012642	sf3a1	97	86.849	Seriola_lalandi_dorsalis
ENSIPUG00000002470	sf3a1	98	79.948	ENSSARG00000005960	SF3A1	99	79.036	Sorex_araneus
ENSIPUG00000002470	sf3a1	97	81.795	ENSSPUG00000018863	SF3A1	97	80.359	Sphenodon_punctatus
ENSIPUG00000002470	sf3a1	99	86.917	ENSSPAG00000011856	sf3a1	98	86.140	Stegastes_partitus
ENSIPUG00000002470	sf3a1	98	82.161	ENSSSCG00000010002	SF3A1	96	82.552	Sus_scrofa
ENSIPUG00000002470	sf3a1	97	82.260	ENSTGUG00000010547	SF3A1	99	81.371	Taeniopygia_guttata
ENSIPUG00000002470	sf3a1	98	85.286	ENSTRUG00000006118	sf3a1	97	83.594	Takifugu_rubripes
ENSIPUG00000002470	sf3a1	59	85.926	ENSTNIG00000005713	sf3a1	88	88.991	Tetraodon_nigroviridis
ENSIPUG00000002470	sf3a1	98	75.911	ENSTBEG00000012771	SF3A1	96	75.651	Tupaia_belangeri
ENSIPUG00000002470	sf3a1	98	83.203	ENSTTRG00000001535	SF3A1	96	83.073	Tursiops_truncatus
ENSIPUG00000002470	sf3a1	98	81.890	ENSUAMG00000006750	SF3A1	95	81.627	Ursus_americanus
ENSIPUG00000002470	sf3a1	98	82.682	ENSUMAG00000016665	SF3A1	98	82.546	Ursus_maritimus
ENSIPUG00000002470	sf3a1	98	82.682	ENSVVUG00000003075	SF3A1	96	82.422	Vulpes_vulpes
ENSIPUG00000002470	sf3a1	98	80.577	ENSXETG00000016144	sf3a1	96	80.285	Xenopus_tropicalis
ENSIPUG00000002470	sf3a1	99	85.013	ENSXCOG00000015653	sf3a1	98	84.238	Xiphophorus_couchianus
ENSIPUG00000002470	sf3a1	99	85.271	ENSXMAG00000002753	sf3a1	98	84.496	Xiphophorus_maculatus