EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000002679 (Gene tree)
Gene ID: 108258180
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 10104 bases
Position: chr2:9897047-9907150
Accession: 108258180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000003790	Btz	PF09405.10	2.1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000003970	-	4617	XM_017456650	ENSIPUP00000003790	746 (aa)	XP_017312139	A0A2D0Q1G2

Gene Model

Click here to download ENSIPUG00000002679's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002679's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002679	casc3	92	47.051	ENSACAG00000002674	CASC3	98	45.594	Anolis_carolinensis
ENSIPUG00000002679	casc3	76	56.634	ENSANAG00000034820	-	50	59.223	Aotus_nancymaae
ENSIPUG00000002679	casc3	63	65.385	ENSANAG00000031954	-	97	69.856	Aotus_nancymaae
ENSIPUG00000002679	casc3	100	74.359	ENSAMXG00000032452	casc3	100	73.427	Astyanax_mexicanus
ENSIPUG00000002679	casc3	92	47.801	ENSCJAG00000016032	CASC3	98	47.251	Callithrix_jacchus
ENSIPUG00000002679	casc3	99	45.523	ENSCAFG00020018882	CASC3	93	58.610	Canis_lupus_dingo
ENSIPUG00000002679	casc3	91	46.296	ENSTSYG00000002975	CASC3	89	48.718	Carlito_syrichta
ENSIPUG00000002679	casc3	99	46.565	ENSCATG00000033593	CASC3	98	47.539	Cercocebus_atys
ENSIPUG00000002679	casc3	99	46.565	ENSCSAG00000002777	CASC3	98	47.539	Chlorocebus_sabaeus
ENSIPUG00000002679	casc3	98	47.247	ENSCPBG00000004750	CASC3	97	48.307	Chrysemys_picta_bellii
ENSIPUG00000002679	casc3	99	46.056	ENSCANG00000008814	CASC3	98	47.150	Colobus_angolensis_palliatus
ENSIPUG00000002679	casc3	100	69.419	ENSDARG00000029911	casc3	100	69.935	Danio_rerio
ENSIPUG00000002679	casc3	81	38.754	ENSEBUG00000010654	casc3	84	38.710	Eptatretus_burgeri
ENSIPUG00000002679	casc3	99	43.881	ENSEASG00005002909	CASC3	88	60.127	Equus_asinus_asinus
ENSIPUG00000002679	casc3	74	39.292	ENSEEUG00000014253	CASC3	98	38.957	Erinaceus_europaeus
ENSIPUG00000002679	casc3	98	59.748	ENSELUG00000015093	casc3	99	59.772	Esox_lucius
ENSIPUG00000002679	casc3	91	48.179	ENSGALG00000031813	CASC3	97	47.098	Gallus_gallus
ENSIPUG00000002679	casc3	64	70.803	ENSGAGG00000008432	CASC3	76	70.290	Gopherus_agassizii
ENSIPUG00000002679	casc3	98	56.011	ENSHCOG00000002664	casc3	99	54.509	Hippocampus_comes
ENSIPUG00000002679	casc3	82	49.604	ENSSTOG00000006374	CASC3	98	47.258	Ictidomys_tridecemlineatus
ENSIPUG00000002679	casc3	99	46.438	ENSJJAG00000023525	Casc3	98	46.770	Jaculus_jaculus
ENSIPUG00000002679	casc3	98	45.791	ENSLACG00000013200	CASC3	99	44.444	Latimeria_chalumnae
ENSIPUG00000002679	casc3	99	46.565	ENSMFAG00000041496	CASC3	98	59.172	Macaca_fascicularis
ENSIPUG00000002679	casc3	99	46.565	ENSMMUG00000045187	CASC3	98	47.539	Macaca_mulatta
ENSIPUG00000002679	casc3	91	48.069	ENSMLEG00000029049	CASC3	98	48.933	Mandrillus_leucophaeus
ENSIPUG00000002679	casc3	80	47.861	ENSMGAG00000013247	CASC3	91	51.136	Meleagris_gallopavo
ENSIPUG00000002679	casc3	82	47.759	ENSMICG00000003321	CASC3	98	47.409	Microcebus_murinus
ENSIPUG00000002679	casc3	98	56.885	ENSMMOG00000014339	casc3	99	56.959	Mola_mola
ENSIPUG00000002679	casc3	55	87.000	ENSMALG00000019771	casc3	78	82.883	Monopterus_albus
ENSIPUG00000002679	casc3	99	46.018	ENSMLUG00000010520	CASC3	98	47.197	Myotis_lucifugus
ENSIPUG00000002679	casc3	82	70.927	ENSONIG00000009337	casc3	99	57.831	Oreochromis_niloticus
ENSIPUG00000002679	casc3	99	46.895	ENSOCUG00000002954	CASC3	98	47.082	Oryctolagus_cuniculus
ENSIPUG00000002679	casc3	98	54.628	ENSORLG00000023125	casc3	99	54.323	Oryzias_latipes
ENSIPUG00000002679	casc3	99	46.819	ENSPANG00000021708	CASC3	98	47.668	Papio_anubis
ENSIPUG00000002679	casc3	98	57.902	ENSPKIG00000023186	casc3	97	56.711	Paramormyrops_kingsleyae
ENSIPUG00000002679	casc3	99	44.810	ENSPCOG00000008183	CASC3	98	47.798	Propithecus_coquereli
ENSIPUG00000002679	casc3	100	74.323	ENSPNAG00000015928	casc3	100	74.452	Pygocentrus_nattereri
ENSIPUG00000002679	casc3	60	70.290	ENSRNOG00000009716	Casc3	91	58.788	Rattus_norvegicus
ENSIPUG00000002679	casc3	99	45.929	ENSRBIG00000033289	CASC3	98	46.693	Rhinopithecus_bieti
ENSIPUG00000002679	casc3	99	45.929	ENSRROG00000022337	CASC3	98	47.409	Rhinopithecus_roxellana
ENSIPUG00000002679	casc3	98	57.717	ENSSFOG00015002645	casc3	99	57.308	Scleropages_formosus
ENSIPUG00000002679	casc3	78	64.839	ENSSLDG00000020308	casc3	71	82.171	Seriola_lalandi_dorsalis
ENSIPUG00000002679	casc3	55	58.947	ENSSARG00000010378	CASC3	66	72.464	Sorex_araneus
ENSIPUG00000002679	casc3	73	49.113	ENSTGUG00000002300	CASC3	99	49.645	Taeniopygia_guttata
ENSIPUG00000002679	casc3	64	66.047	ENSTBEG00000017459	CASC3	65	68.868	Tupaia_belangeri
ENSIPUG00000002679	casc3	51	57.426	ENSTTRG00000016896	CASC3	62	72.464	Tursiops_truncatus
ENSIPUG00000002679	casc3	99	46.018	ENSUAMG00000015116	CASC3	98	47.280	Ursus_americanus
ENSIPUG00000002679	casc3	91	47.653	ENSUMAG00000017697	CASC3	95	59.215	Ursus_maritimus