EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000002828 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 8290 bases
Position: chr16:9303243-9311532
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004018	La	PF05383.17	8.5e-21	1	1
ENSIPUP00000004006	La	PF05383.17	8.7e-21	1	1
ENSIPUP00000004097	La	PF05383.17	2.3e-17	1	1
ENSIPUP00000004065	La	PF05383.17	2.4e-17	1	1
ENSIPUP00000004204	La	PF05383.17	2.4e-17	1	1
ENSIPUP00000004200	La	PF05383.17	2.5e-17	1	1
ENSIPUP00000004180	La	PF05383.17	2.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004397	-	1299	-	ENSIPUP00000004200	432 (aa)	-	-
ENSIPUT00000004291	-	1218	-	ENSIPUP00000004097	405 (aa)	-	-
ENSIPUT00000004377	-	1164	-	ENSIPUP00000004180	387 (aa)	-	-
ENSIPUT00000004201	-	1287	-	ENSIPUP00000004006	428 (aa)	-	-
ENSIPUT00000004213	-	1266	-	ENSIPUP00000004018	421 (aa)	-	-
ENSIPUT00000004401	-	1263	-	ENSIPUP00000004204	420 (aa)	-	-
ENSIPUT00000004259	-	1254	-	ENSIPUP00000004065	417 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000002828's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000002828	-	98	37.727	ENSIPUG00000010187	larp6	67	38.128
ENSIPUG00000002828	-	95	36.930	ENSIPUG00000007609	larp6b	90	35.225

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002828	-	96	37.333	ENSG00000166173	LARP6	90	36.444	Homo_sapiens
ENSIPUG00000002828	-	97	40.465	ENSAPOG00000021773	larp6a	64	35.682	Acanthochromis_polyacanthus
ENSIPUG00000002828	-	94	37.923	ENSAMEG00000008897	LARP6	97	36.967	Ailuropoda_melanoleuca
ENSIPUG00000002828	-	97	39.767	ENSACIG00000005166	larp6a	87	35.455	Amphilophus_citrinellus
ENSIPUG00000002828	-	97	40.603	ENSAOCG00000002284	larp6a	64	35.828	Amphiprion_ocellaris
ENSIPUG00000002828	-	97	40.603	ENSAPEG00000008077	larp6a	86	35.828	Amphiprion_percula
ENSIPUG00000002828	-	97	41.067	ENSATEG00000004018	larp6a	63	36.735	Anabas_testudineus
ENSIPUG00000002828	-	96	39.618	ENSAPLG00000009914	LARP6	99	38.337	Anas_platyrhynchos
ENSIPUG00000002828	-	95	37.897	ENSACAG00000008613	LARP6	99	38.278	Anolis_carolinensis
ENSIPUG00000002828	-	96	36.585	ENSANAG00000024860	LARP6	90	36.222	Aotus_nancymaae
ENSIPUG00000002828	-	97	39.767	ENSACLG00000018561	larp6a	62	35.682	Astatotilapia_calliptera
ENSIPUG00000002828	-	98	64.951	ENSAMXG00000036816	-	99	65.228	Astyanax_mexicanus
ENSIPUG00000002828	-	96	38.605	ENSAMXG00000029387	larp6a	68	35.650	Astyanax_mexicanus
ENSIPUG00000002828	-	98	36.854	ENSBTAG00000003915	LARP6	92	37.609	Bos_taurus
ENSIPUG00000002828	-	96	36.585	ENSCJAG00000018642	-	90	36.222	Callithrix_jacchus
ENSIPUG00000002828	-	96	36.585	ENSCJAG00000046236	-	90	36.222	Callithrix_jacchus
ENSIPUG00000002828	-	96	36.620	ENSCAFG00000017616	LARP6	98	37.176	Canis_familiaris
ENSIPUG00000002828	-	98	36.343	ENSCAFG00020007296	LARP6	92	36.166	Canis_lupus_dingo
ENSIPUG00000002828	-	98	36.854	ENSCHIG00000013742	LARP6	92	37.609	Capra_hircus
ENSIPUG00000002828	-	94	36.730	ENSTSYG00000028124	LARP6	86	37.089	Carlito_syrichta
ENSIPUG00000002828	-	93	37.529	ENSCAPG00000015452	LARP6	98	39.007	Cavia_aperea
ENSIPUG00000002828	-	96	35.931	ENSCPOG00000022687	LARP6	86	38.551	Cavia_porcellus
ENSIPUG00000002828	-	96	36.585	ENSCCAG00000036320	LARP6	90	36.222	Cebus_capucinus
ENSIPUG00000002828	-	96	36.667	ENSCATG00000042432	LARP6	90	36.222	Cercocebus_atys
ENSIPUG00000002828	-	97	36.306	ENSCLAG00000007893	LARP6	85	38.915	Chinchilla_lanigera
ENSIPUG00000002828	-	96	37.111	ENSCSAG00000013672	LARP6	90	36.222	Chlorocebus_sabaeus
ENSIPUG00000002828	-	94	38.592	ENSCHOG00000003318	LARP6	87	39.524	Choloepus_hoffmanni
ENSIPUG00000002828	-	94	38.018	ENSCPBG00000010771	LARP6	84	37.923	Chrysemys_picta_bellii
ENSIPUG00000002828	-	92	38.272	ENSCANG00000025833	LARP6	98	37.560	Colobus_angolensis_palliatus
ENSIPUG00000002828	-	94	37.956	ENSCGRG00001024472	Larp6	92	35.792	Cricetulus_griseus_chok1gshd
ENSIPUG00000002828	-	94	37.956	ENSCGRG00000004527	Larp6	92	35.792	Cricetulus_griseus_crigri
ENSIPUG00000002828	-	97	40.235	ENSCSEG00000011196	larp6a	66	36.117	Cynoglossus_semilaevis
ENSIPUG00000002828	-	97	39.675	ENSCVAG00000009605	larp6a	64	36.215	Cyprinodon_variegatus
ENSIPUG00000002828	-	96	37.825	ENSDARG00000005355	larp6a	95	39.078	Danio_rerio
ENSIPUG00000002828	-	94	37.321	ENSDNOG00000042993	LARP6	86	38.372	Dasypus_novemcinctus
ENSIPUG00000002828	-	98	35.165	ENSDORG00000023910	Larp6	91	36.404	Dipodomys_ordii
ENSIPUG00000002828	-	94	38.107	ENSEASG00005005490	LARP6	67	36.087	Equus_asinus_asinus
ENSIPUG00000002828	-	98	36.383	ENSECAG00000014190	LARP6	97	36.996	Equus_caballus
ENSIPUG00000002828	-	94	37.204	ENSFCAG00000001361	LARP6	92	36.087	Felis_catus
ENSIPUG00000002828	-	96	40.284	ENSFALG00000012389	LARP6	95	39.083	Ficedula_albicollis
ENSIPUG00000002828	-	97	38.322	ENSFDAG00000019994	LARP6	86	37.472	Fukomys_damarensis
ENSIPUG00000002828	-	97	39.443	ENSFHEG00000010312	larp6a	62	36.215	Fundulus_heteroclitus
ENSIPUG00000002828	-	98	38.462	ENSGALG00000004046	LARP6	90	37.168	Gallus_gallus
ENSIPUG00000002828	-	94	39.952	ENSGACG00000014622	larp6a	96	36.754	Gasterosteus_aculeatus
ENSIPUG00000002828	-	92	39.012	ENSGGOG00000024151	LARP6	98	37.799	Gorilla_gorilla
ENSIPUG00000002828	-	97	39.767	ENSHBUG00000021014	larp6a	62	35.682	Haplochromis_burtoni
ENSIPUG00000002828	-	97	37.500	ENSHGLG00000015112	LARP6	87	36.842	Heterocephalus_glaber_female
ENSIPUG00000002828	-	94	38.889	ENSHGLG00100013159	LARP6	98	38.498	Heterocephalus_glaber_male
ENSIPUG00000002828	-	94	37.470	ENSSTOG00000024279	LARP6	93	37.413	Ictidomys_tridecemlineatus
ENSIPUG00000002828	-	94	37.470	ENSJJAG00000011013	Larp6	86	37.028	Jaculus_jaculus
ENSIPUG00000002828	-	97	36.744	ENSLBEG00000000170	larp6a	85	34.921	Labrus_bergylta
ENSIPUG00000002828	-	96	48.798	ENSLACG00000002786	-	98	48.201	Latimeria_chalumnae
ENSIPUG00000002828	-	93	37.170	ENSLACG00000018706	LARP6	84	37.558	Latimeria_chalumnae
ENSIPUG00000002828	-	94	39.756	ENSLOCG00000014592	larp6a	66	36.842	Lepisosteus_oculatus
ENSIPUG00000002828	-	97	53.191	ENSLOCG00000008547	-	84	51.515	Lepisosteus_oculatus
ENSIPUG00000002828	-	96	36.638	ENSLAFG00000016343	LARP6	95	39.675	Loxodonta_africana
ENSIPUG00000002828	-	96	36.748	ENSMFAG00000035507	LARP6	98	36.303	Macaca_fascicularis
ENSIPUG00000002828	-	96	36.667	ENSMMUG00000004429	LARP6	92	36.222	Macaca_mulatta
ENSIPUG00000002828	-	96	36.667	ENSMNEG00000045335	LARP6	90	36.222	Macaca_nemestrina
ENSIPUG00000002828	-	92	38.272	ENSMLEG00000038587	LARP6	98	37.560	Mandrillus_leucophaeus
ENSIPUG00000002828	-	97	40.139	ENSMAMG00000005261	larp6a	64	36.054	Mastacembelus_armatus
ENSIPUG00000002828	-	97	39.767	ENSMZEG00005005774	larp6a	62	35.682	Maylandia_zebra
ENSIPUG00000002828	-	96	38.647	ENSMGAG00000005077	LARP6	99	38.443	Meleagris_gallopavo
ENSIPUG00000002828	-	94	38.443	ENSMAUG00000018486	Larp6	85	37.825	Mesocricetus_auratus
ENSIPUG00000002828	-	94	38.350	ENSMICG00000011234	LARP6	86	38.263	Microcebus_murinus
ENSIPUG00000002828	-	94	38.686	ENSMOCG00000010492	Larp6	92	36.659	Microtus_ochrogaster
ENSIPUG00000002828	-	97	40.465	ENSMMOG00000016284	larp6a	87	36.364	Mola_mola
ENSIPUG00000002828	-	96	38.278	ENSMODG00000009034	LARP6	81	38.242	Monodelphis_domestica
ENSIPUG00000002828	-	98	38.426	ENSMALG00000014439	larp6a	85	34.615	Monopterus_albus
ENSIPUG00000002828	-	94	38.443	MGP_CAROLIEiJ_G0032314	Larp6	85	38.152	Mus_caroli
ENSIPUG00000002828	-	98	37.609	ENSMUSG00000034839	Larp6	85	38.208	Mus_musculus
ENSIPUG00000002828	-	94	38.200	MGP_PahariEiJ_G0015180	Larp6	85	37.352	Mus_pahari
ENSIPUG00000002828	-	94	38.686	MGP_SPRETEiJ_G0033452	Larp6	85	37.825	Mus_spretus
ENSIPUG00000002828	-	94	36.256	ENSMPUG00000017086	LARP6	97	36.817	Mustela_putorius_furo
ENSIPUG00000002828	-	94	37.897	ENSMLUG00000010319	LARP6	86	36.916	Myotis_lucifugus
ENSIPUG00000002828	-	94	37.621	ENSNGAG00000014238	Larp6	85	38.298	Nannospalax_galili
ENSIPUG00000002828	-	97	40.000	ENSNBRG00000008120	larp6a	86	35.682	Neolamprologus_brichardi
ENSIPUG00000002828	-	96	37.111	ENSNLEG00000013691	LARP6	90	36.222	Nomascus_leucogenys
ENSIPUG00000002828	-	69	43.525	ENSMEUG00000002270	LARP6	52	44.361	Notamacropus_eugenii
ENSIPUG00000002828	-	67	43.750	ENSOPRG00000004868	-	73	42.529	Ochotona_princeps
ENSIPUG00000002828	-	96	36.052	ENSODEG00000015958	LARP6	85	39.070	Octodon_degus
ENSIPUG00000002828	-	94	40.385	ENSONIG00000002901	larp6a	83	36.092	Oreochromis_niloticus
ENSIPUG00000002828	-	94	38.107	ENSOCUG00000009306	LARP6	96	38.325	Oryctolagus_cuniculus
ENSIPUG00000002828	-	97	41.355	ENSORLG00000014256	larp6a	85	37.647	Oryzias_latipes
ENSIPUG00000002828	-	97	39.211	ENSORLG00020019657	larp6a	62	37.150	Oryzias_latipes_hni
ENSIPUG00000002828	-	97	39.443	ENSORLG00015017915	larp6a	62	37.383	Oryzias_latipes_hsok
ENSIPUG00000002828	-	97	40.278	ENSOMEG00000017049	larp6a	63	37.123	Oryzias_melastigma
ENSIPUG00000002828	-	94	37.897	ENSOGAG00000000522	LARP6	92	37.555	Otolemur_garnettii
ENSIPUG00000002828	-	94	37.226	ENSOARG00000018750	LARP6	97	38.771	Ovis_aries
ENSIPUG00000002828	-	92	39.012	ENSPPAG00000031247	LARP6	98	37.799	Pan_paniscus
ENSIPUG00000002828	-	94	36.916	ENSPPRG00000011282	LARP6	92	36.087	Panthera_pardus
ENSIPUG00000002828	-	94	37.204	ENSPTIG00000015318	LARP6	85	37.589	Panthera_tigris_altaica
ENSIPUG00000002828	-	96	37.333	ENSPTRG00000007234	LARP6	90	36.444	Pan_troglodytes
ENSIPUG00000002828	-	96	36.667	ENSPANG00000016362	LARP6	90	36.222	Papio_anubis
ENSIPUG00000002828	-	93	40.842	ENSPKIG00000020103	larp6a	86	37.330	Paramormyrops_kingsleyae
ENSIPUG00000002828	-	94	38.480	ENSPKIG00000004511	LARP6	63	36.557	Paramormyrops_kingsleyae
ENSIPUG00000002828	-	94	41.007	ENSPMGG00000006958	larp6a	84	37.560	Periophthalmus_magnuspinnatus
ENSIPUG00000002828	-	94	38.200	ENSPEMG00000012909	Larp6	92	36.226	Peromyscus_maniculatus_bairdii
ENSIPUG00000002828	-	96	37.232	ENSPCIG00000020765	LARP6	81	37.617	Phascolarctos_cinereus
ENSIPUG00000002828	-	94	39.568	ENSPFOG00000014175	larp6a	83	34.624	Poecilia_formosa
ENSIPUG00000002828	-	97	39.211	ENSPLAG00000011105	larp6a	62	35.648	Poecilia_latipinna
ENSIPUG00000002828	-	92	39.012	ENSPPYG00000006604	LARP6	84	37.799	Pongo_abelii
ENSIPUG00000002828	-	98	37.118	ENSPCOG00000022934	LARP6	92	37.391	Propithecus_coquereli
ENSIPUG00000002828	-	99	36.166	ENSPVAG00000005618	LARP6	92	36.245	Pteropus_vampyrus
ENSIPUG00000002828	-	97	39.767	ENSPNYG00000009835	larp6a	86	35.682	Pundamilia_nyererei
ENSIPUG00000002828	-	96	38.372	ENSPNAG00000017966	larp6a	72	36.301	Pygocentrus_nattereri
ENSIPUG00000002828	-	98	37.983	ENSRNOG00000012438	Larp6	85	37.825	Rattus_norvegicus
ENSIPUG00000002828	-	95	37.054	ENSRBIG00000032902	LARP6	87	36.977	Rhinopithecus_bieti
ENSIPUG00000002828	-	96	36.667	ENSRROG00000043074	LARP6	90	36.222	Rhinopithecus_roxellana
ENSIPUG00000002828	-	92	38.329	ENSSBOG00000024190	LARP6	98	37.560	Saimiri_boliviensis_boliviensis
ENSIPUG00000002828	-	96	38.942	ENSSHAG00000018495	LARP6	97	39.759	Sarcophilus_harrisii
ENSIPUG00000002828	-	94	39.461	ENSSFOG00015023268	larp6a	85	37.995	Scleropages_formosus
ENSIPUG00000002828	-	97	39.303	ENSSFOG00015002254	LARP6	82	39.594	Scleropages_formosus
ENSIPUG00000002828	-	97	40.093	ENSSMAG00000009953	larp6a	63	36.712	Scophthalmus_maximus
ENSIPUG00000002828	-	97	40.603	ENSSDUG00000007438	larp6a	63	36.054	Seriola_dumerili
ENSIPUG00000002828	-	97	40.603	ENSSLDG00000016647	larp6a	64	36.054	Seriola_lalandi_dorsalis
ENSIPUG00000002828	-	92	39.109	ENSSPUG00000011312	LARP6	99	36.343	Sphenodon_punctatus
ENSIPUG00000002828	-	97	41.067	ENSSPAG00000020502	larp6a	64	36.281	Stegastes_partitus
ENSIPUG00000002828	-	96	36.842	ENSSSCG00000004974	LARP6	91	36.842	Sus_scrofa
ENSIPUG00000002828	-	96	40.241	ENSTGUG00000005808	LARP6	99	39.578	Taeniopygia_guttata
ENSIPUG00000002828	-	96	40.235	ENSTRUG00000003151	larp6a	63	37.055	Takifugu_rubripes
ENSIPUG00000002828	-	98	39.952	ENSTNIG00000011926	larp6a	90	36.170	Tetraodon_nigroviridis
ENSIPUG00000002828	-	92	37.681	ENSTBEG00000015077	LARP6	98	37.736	Tupaia_belangeri
ENSIPUG00000002828	-	96	37.813	ENSUAMG00000010467	LARP6	88	37.188	Ursus_americanus
ENSIPUG00000002828	-	98	36.343	ENSVVUG00000015227	LARP6	96	37.413	Vulpes_vulpes
ENSIPUG00000002828	-	99	36.695	ENSXETG00000020340	larp6	92	37.174	Xenopus_tropicalis
ENSIPUG00000002828	-	97	39.401	ENSXCOG00000012654	larp6a	87	35.880	Xiphophorus_couchianus
ENSIPUG00000002828	-	97	39.211	ENSXMAG00000021015	larp6a	59	35.880	Xiphophorus_maculatus