EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000002899 (Gene tree)
Gene ID: 108259495
Gene Symbol: trmt1
Alias: im:7150454
Full Name: tRNA methyltransferase 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 7367 bases
Position: chr27:13741249-13748615
Accession: 108259495
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004125	zf-CCCH	PF00642.24	5.8e-05	1	1
ENSIPUP00000004131	zf-CCCH	PF00642.24	6.1e-05	1	1
ENSIPUP00000004131	TRM	PF02005.16	1.8e-140	1	1
ENSIPUP00000004125	TRM	PF02005.16	2.8e-129	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004327	-	3209	XM_017459036	ENSIPUP00000004131	681 (aa)	XP_017314525	A0A2D0QAW7
ENSIPUT00000004321	-	1899	-	ENSIPUP00000004125	632 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000002899's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002899's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002899	trmt1	85	66.267	ENSG00000104907	TRMT1	100	73.822	Homo_sapiens
ENSIPUG00000002899	trmt1	85	65.593	ENSAMEG00000012598	TRMT1	86	65.593	Ailuropoda_melanoleuca
ENSIPUG00000002899	trmt1	90	66.883	ENSACIG00000018680	trmt1	94	66.026	Amphilophus_citrinellus
ENSIPUG00000002899	trmt1	86	77.683	ENSAOCG00000006781	trmt1	87	77.172	Amphiprion_ocellaris
ENSIPUG00000002899	trmt1	86	77.683	ENSAPEG00000007712	trmt1	87	77.172	Amphiprion_percula
ENSIPUG00000002899	trmt1	96	72.504	ENSATEG00000001872	trmt1	94	71.775	Anabas_testudineus
ENSIPUG00000002899	trmt1	88	63.218	ENSACAG00000003825	TRMT1	97	62.890	Anolis_carolinensis
ENSIPUG00000002899	trmt1	85	64.726	ENSANAG00000023016	TRMT1	92	64.676	Aotus_nancymaae
ENSIPUG00000002899	trmt1	90	73.443	ENSACLG00000010073	trmt1	97	72.951	Astatotilapia_calliptera
ENSIPUG00000002899	trmt1	89	80.131	ENSAMXG00000012026	trmt1	90	79.642	Astyanax_mexicanus
ENSIPUG00000002899	trmt1	85	65.582	ENSBTAG00000019325	TRMT1	81	65.582	Bos_taurus
ENSIPUG00000002899	trmt1	79	40.909	WBGene00006613	trm-1	96	41.091	Caenorhabditis_elegans
ENSIPUG00000002899	trmt1	85	63.481	ENSCJAG00000004566	TRMT1	88	63.435	Callithrix_jacchus
ENSIPUG00000002899	trmt1	86	65.546	ENSCAFG00000017070	TRMT1	91	65.546	Canis_familiaris
ENSIPUG00000002899	trmt1	86	65.152	ENSCAFG00020005397	TRMT1	91	63.953	Canis_lupus_dingo
ENSIPUG00000002899	trmt1	85	65.299	ENSCHIG00000013569	TRMT1	86	65.299	Capra_hircus
ENSIPUG00000002899	trmt1	87	62.270	ENSTSYG00000003207	TRMT1	89	61.770	Carlito_syrichta
ENSIPUG00000002899	trmt1	79	62.362	ENSCAPG00000003355	TRMT1	94	61.581	Cavia_aperea
ENSIPUG00000002899	trmt1	85	64.555	ENSCPOG00000011754	TRMT1	87	63.823	Cavia_porcellus
ENSIPUG00000002899	trmt1	87	63.471	ENSCCAG00000022263	TRMT1	93	63.097	Cebus_capucinus
ENSIPUG00000002899	trmt1	70	56.549	ENSCATG00000038220	-	84	56.522	Cercocebus_atys
ENSIPUG00000002899	trmt1	85	66.781	ENSCATG00000039850	TRMT1	86	66.438	Cercocebus_atys
ENSIPUG00000002899	trmt1	85	66.038	ENSCLAG00000015295	TRMT1	89	64.089	Chinchilla_lanigera
ENSIPUG00000002899	trmt1	72	68.966	ENSCSAG00000006500	TRMT1	91	68.560	Chlorocebus_sabaeus
ENSIPUG00000002899	trmt1	88	65.776	ENSCPBG00000023866	TRMT1	88	65.609	Chrysemys_picta_bellii
ENSIPUG00000002899	trmt1	82	49.027	ENSCING00000002884	-	98	49.027	Ciona_intestinalis
ENSIPUG00000002899	trmt1	81	48.921	ENSCSAVG00000010927	-	100	48.540	Ciona_savignyi
ENSIPUG00000002899	trmt1	85	53.072	ENSCANG00000040631	TRMT1	86	52.730	Colobus_angolensis_palliatus
ENSIPUG00000002899	trmt1	85	51.356	ENSCANG00000031650	-	96	50.422	Colobus_angolensis_palliatus
ENSIPUG00000002899	trmt1	86	64.262	ENSCGRG00001022594	Trmt1	90	63.712	Cricetulus_griseus_chok1gshd
ENSIPUG00000002899	trmt1	86	64.262	ENSCGRG00000017732	Trmt1	88	63.712	Cricetulus_griseus_crigri
ENSIPUG00000002899	trmt1	86	76.068	ENSCSEG00000001643	trmt1	85	76.560	Cynoglossus_semilaevis
ENSIPUG00000002899	trmt1	86	75.897	ENSCVAG00000011886	trmt1	87	76.068	Cyprinodon_variegatus
ENSIPUG00000002899	trmt1	94	73.872	ENSDARG00000010978	trmt1	94	73.561	Danio_rerio
ENSIPUG00000002899	trmt1	79	45.191	ENSDNOG00000048240	-	91	44.646	Dasypus_novemcinctus
ENSIPUG00000002899	trmt1	85	64.384	ENSDORG00000014298	Trmt1	86	64.041	Dipodomys_ordii
ENSIPUG00000002899	trmt1	81	46.631	FBgn0032430	CG6388	93	46.631	Drosophila_melanogaster
ENSIPUG00000002899	trmt1	78	54.637	ENSEBUG00000003449	trmt1	78	57.488	Eptatretus_burgeri
ENSIPUG00000002899	trmt1	85	66.267	ENSEASG00005004050	TRMT1	90	66.267	Equus_asinus_asinus
ENSIPUG00000002899	trmt1	85	66.438	ENSECAG00000016149	TRMT1	90	66.438	Equus_caballus
ENSIPUG00000002899	trmt1	57	56.203	ENSEEUG00000014102	-	100	56.203	Erinaceus_europaeus
ENSIPUG00000002899	trmt1	86	74.573	ENSELUG00000021659	trmt1	87	73.898	Esox_lucius
ENSIPUG00000002899	trmt1	87	65.719	ENSFCAG00000000483	TRMT1	89	65.552	Felis_catus
ENSIPUG00000002899	trmt1	86	64.983	ENSFDAG00000007386	TRMT1	88	64.597	Fukomys_damarensis
ENSIPUG00000002899	trmt1	78	78.261	ENSFHEG00000012865	trmt1	86	77.547	Fundulus_heteroclitus
ENSIPUG00000002899	trmt1	85	66.265	ENSGMOG00000006564	trmt1	99	66.156	Gadus_morhua
ENSIPUG00000002899	trmt1	87	74.959	ENSGAFG00000011862	trmt1	92	75.124	Gambusia_affinis
ENSIPUG00000002899	trmt1	85	73.585	ENSGACG00000000227	trmt1	92	73.585	Gasterosteus_aculeatus
ENSIPUG00000002899	trmt1	88	65.442	ENSGAGG00000016432	TRMT1	87	64.959	Gopherus_agassizii
ENSIPUG00000002899	trmt1	85	66.267	ENSGGOG00000014007	TRMT1	92	61.360	Gorilla_gorilla
ENSIPUG00000002899	trmt1	83	68.028	ENSHBUG00000008821	trmt1	92	67.730	Haplochromis_burtoni
ENSIPUG00000002899	trmt1	86	65.488	ENSHGLG00000015972	TRMT1	88	65.430	Heterocephalus_glaber_female
ENSIPUG00000002899	trmt1	86	61.345	ENSHGLG00100018112	TRMT1	88	61.008	Heterocephalus_glaber_male
ENSIPUG00000002899	trmt1	91	69.936	ENSHCOG00000009447	trmt1	94	69.440	Hippocampus_comes
ENSIPUG00000002899	trmt1	86	64.815	ENSSTOG00000012531	TRMT1	89	64.262	Ictidomys_tridecemlineatus
ENSIPUG00000002899	trmt1	85	65.411	ENSJJAG00000017154	Trmt1	88	65.529	Jaculus_jaculus
ENSIPUG00000002899	trmt1	87	75.459	ENSKMAG00000011809	trmt1	96	75.000	Kryptolebias_marmoratus
ENSIPUG00000002899	trmt1	86	75.726	ENSLBEG00000012703	trmt1	85	75.385	Labrus_bergylta
ENSIPUG00000002899	trmt1	85	59.727	ENSLACG00000014585	TRMT1	95	59.052	Latimeria_chalumnae
ENSIPUG00000002899	trmt1	87	66.387	ENSLOCG00000006479	trmt1	99	66.387	Lepisosteus_oculatus
ENSIPUG00000002899	trmt1	87	64.548	ENSLAFG00000014072	TRMT1	90	64.047	Loxodonta_africana
ENSIPUG00000002899	trmt1	85	66.781	ENSMFAG00000033143	TRMT1	86	66.438	Macaca_fascicularis
ENSIPUG00000002899	trmt1	85	62.522	ENSMMUG00000001167	TRMT1	87	62.745	Macaca_mulatta
ENSIPUG00000002899	trmt1	85	66.781	ENSMNEG00000037867	TRMT1	86	66.438	Macaca_nemestrina
ENSIPUG00000002899	trmt1	85	66.610	ENSMLEG00000016142	TRMT1	87	66.267	Mandrillus_leucophaeus
ENSIPUG00000002899	trmt1	91	73.858	ENSMAMG00000004357	trmt1	94	73.626	Mastacembelus_armatus
ENSIPUG00000002899	trmt1	89	74.056	ENSMZEG00005014510	trmt1	90	73.563	Maylandia_zebra
ENSIPUG00000002899	trmt1	85	64.407	ENSMAUG00000011134	Trmt1	92	60.804	Mesocricetus_auratus
ENSIPUG00000002899	trmt1	86	65.546	ENSMICG00000000793	TRMT1	88	65.494	Microcebus_murinus
ENSIPUG00000002899	trmt1	85	65.009	ENSMOCG00000015895	Trmt1	92	59.934	Microtus_ochrogaster
ENSIPUG00000002899	trmt1	87	75.585	ENSMMOG00000011097	trmt1	94	75.585	Mola_mola
ENSIPUG00000002899	trmt1	86	65.829	ENSMODG00000011619	TRMT1	95	65.997	Monodelphis_domestica
ENSIPUG00000002899	trmt1	84	65.921	MGP_CAROLIEiJ_G0031304	Trmt1	86	65.232	Mus_caroli
ENSIPUG00000002899	trmt1	84	65.577	ENSMUSG00000001909	Trmt1	91	60.906	Mus_musculus
ENSIPUG00000002899	trmt1	84	65.404	MGP_SPRETEiJ_G0032422	Trmt1	91	60.906	Mus_spretus
ENSIPUG00000002899	trmt1	89	64.495	ENSMPUG00000004210	TRMT1	86	64.495	Mustela_putorius_furo
ENSIPUG00000002899	trmt1	86	65.776	ENSMLUG00000012809	TRMT1	92	60.806	Myotis_lucifugus
ENSIPUG00000002899	trmt1	85	64.384	ENSNGAG00000022486	Trmt1	86	64.384	Nannospalax_galili
ENSIPUG00000002899	trmt1	75	83.183	ENSNBRG00000024376	trmt1	86	83.183	Neolamprologus_brichardi
ENSIPUG00000002899	trmt1	72	63.522	ENSNLEG00000013019	-	89	62.145	Nomascus_leucogenys
ENSIPUG00000002899	trmt1	87	65.152	ENSMEUG00000013756	TRMT1	99	65.152	Notamacropus_eugenii
ENSIPUG00000002899	trmt1	72	66.000	ENSOPRG00000009471	-	71	69.734	Ochotona_princeps
ENSIPUG00000002899	trmt1	86	65.825	ENSODEG00000010323	TRMT1	88	65.488	Octodon_degus
ENSIPUG00000002899	trmt1	92	74.882	ENSONIG00000000400	trmt1	98	74.444	Oreochromis_niloticus
ENSIPUG00000002899	trmt1	71	68.443	ENSOCUG00000021934	TRMT1	90	68.712	Oryctolagus_cuniculus
ENSIPUG00000002899	trmt1	94	66.667	ENSORLG00000020074	trmt1	95	69.530	Oryzias_latipes
ENSIPUG00000002899	trmt1	94	70.846	ENSORLG00020007561	trmt1	90	74.914	Oryzias_latipes_hni
ENSIPUG00000002899	trmt1	94	70.671	ENSORLG00015006547	trmt1	93	70.203	Oryzias_latipes_hsok
ENSIPUG00000002899	trmt1	86	76.190	ENSOMEG00000019343	trmt1	88	75.680	Oryzias_melastigma
ENSIPUG00000002899	trmt1	88	64.404	ENSOGAG00000025576	TRMT1	93	63.681	Otolemur_garnettii
ENSIPUG00000002899	trmt1	87	54.152	ENSOARG00000009397	TRMT1	83	54.355	Ovis_aries
ENSIPUG00000002899	trmt1	87	58.794	ENSPPRG00000012117	TRMT1	89	61.111	Panthera_pardus
ENSIPUG00000002899	trmt1	70	66.783	ENSPTIG00000008833	TRMT1	84	66.783	Panthera_tigris_altaica
ENSIPUG00000002899	trmt1	85	66.267	ENSPTRG00000010557	TRMT1	92	61.360	Pan_troglodytes
ENSIPUG00000002899	trmt1	80	50.725	ENSPTRG00000050421	-	90	48.227	Pan_troglodytes
ENSIPUG00000002899	trmt1	69	56.604	ENSPANG00000034058	-	81	56.276	Papio_anubis
ENSIPUG00000002899	trmt1	85	66.781	ENSPANG00000009247	TRMT1	87	66.438	Papio_anubis
ENSIPUG00000002899	trmt1	98	68.945	ENSPKIG00000005309	trmt1	98	69.094	Paramormyrops_kingsleyae
ENSIPUG00000002899	trmt1	82	57.245	ENSPSIG00000008762	TRMT1	79	57.245	Pelodiscus_sinensis
ENSIPUG00000002899	trmt1	88	73.623	ENSPMGG00000019764	trmt1	94	73.466	Periophthalmus_magnuspinnatus
ENSIPUG00000002899	trmt1	85	65.068	ENSPEMG00000016247	Trmt1	86	65.068	Peromyscus_maniculatus_bairdii
ENSIPUG00000002899	trmt1	85	61.658	ENSPMAG00000004329	trmt1	90	61.658	Petromyzon_marinus
ENSIPUG00000002899	trmt1	87	65.667	ENSPCIG00000019273	TRMT1	91	65.833	Phascolarctos_cinereus
ENSIPUG00000002899	trmt1	86	78.253	ENSPFOG00000008527	trmt1	89	77.119	Poecilia_formosa
ENSIPUG00000002899	trmt1	86	77.226	ENSPLAG00000018788	trmt1	89	77.491	Poecilia_latipinna
ENSIPUG00000002899	trmt1	87	76.872	ENSPMEG00000013120	trmt1	92	75.783	Poecilia_mexicana
ENSIPUG00000002899	trmt1	87	74.135	ENSPREG00000000211	trmt1	89	74.300	Poecilia_reticulata
ENSIPUG00000002899	trmt1	85	66.096	ENSPPYG00000009622	TRMT1	92	61.194	Pongo_abelii
ENSIPUG00000002899	trmt1	86	60.000	ENSPCAG00000003698	TRMT1	89	60.000	Procavia_capensis
ENSIPUG00000002899	trmt1	86	65.378	ENSPCOG00000008653	TRMT1	88	65.327	Propithecus_coquereli
ENSIPUG00000002899	trmt1	87	65.109	ENSPVAG00000015076	TRMT1	89	65.109	Pteropus_vampyrus
ENSIPUG00000002899	trmt1	90	71.639	ENSPNYG00000013960	trmt1	97	71.148	Pundamilia_nyererei
ENSIPUG00000002899	trmt1	90	80.897	ENSPNAG00000024859	trmt1	98	83.096	Pygocentrus_nattereri
ENSIPUG00000002899	trmt1	84	65.060	ENSRNOG00000002914	Trmt1	89	64.544	Rattus_norvegicus
ENSIPUG00000002899	trmt1	85	67.123	ENSRBIG00000038324	TRMT1	86	66.781	Rhinopithecus_bieti
ENSIPUG00000002899	trmt1	85	48.986	ENSRBIG00000037505	-	97	46.242	Rhinopithecus_bieti
ENSIPUG00000002899	trmt1	85	67.123	ENSRROG00000028599	TRMT1	86	66.781	Rhinopithecus_roxellana
ENSIPUG00000002899	trmt1	85	48.311	ENSRROG00000031847	-	96	45.588	Rhinopithecus_roxellana
ENSIPUG00000002899	trmt1	77	37.024	YDR120C	-	92	36.347	Saccharomyces_cerevisiae
ENSIPUG00000002899	trmt1	87	62.876	ENSSBOG00000028861	TRMT1	93	62.982	Saimiri_boliviensis_boliviensis
ENSIPUG00000002899	trmt1	85	67.526	ENSSHAG00000014381	TRMT1	97	65.517	Sarcophilus_harrisii
ENSIPUG00000002899	trmt1	87	74.199	ENSSFOG00015004139	trmt1	99	66.912	Scleropages_formosus
ENSIPUG00000002899	trmt1	86	76.581	ENSSMAG00000021136	trmt1	91	72.240	Scophthalmus_maximus
ENSIPUG00000002899	trmt1	95	72.615	ENSSDUG00000012740	trmt1	94	71.884	Seriola_dumerili
ENSIPUG00000002899	trmt1	95	72.308	ENSSLDG00000005971	trmt1	94	71.581	Seriola_lalandi_dorsalis
ENSIPUG00000002899	trmt1	79	65.209	ENSSARG00000005138	TRMT1	95	65.146	Sorex_araneus
ENSIPUG00000002899	trmt1	90	49.604	ENSSPUG00000001084	TRMT1	96	49.684	Sphenodon_punctatus
ENSIPUG00000002899	trmt1	86	76.068	ENSSPAG00000007153	trmt1	95	74.705	Stegastes_partitus
ENSIPUG00000002899	trmt1	86	65.604	ENSSSCG00000013744	TRMT1	90	65.476	Sus_scrofa
ENSIPUG00000002899	trmt1	84	72.837	ENSTRUG00000010700	trmt1	86	72.014	Takifugu_rubripes
ENSIPUG00000002899	trmt1	86	75.042	ENSTNIG00000018808	trmt1	99	75.042	Tetraodon_nigroviridis
ENSIPUG00000002899	trmt1	85	63.870	ENSTTRG00000006379	TRMT1	87	63.870	Tursiops_truncatus
ENSIPUG00000002899	trmt1	85	65.932	ENSUAMG00000022911	TRMT1	95	63.390	Ursus_americanus
ENSIPUG00000002899	trmt1	85	65.424	ENSUMAG00000006027	TRMT1	91	65.424	Ursus_maritimus
ENSIPUG00000002899	trmt1	87	65.066	ENSVVUG00000024177	TRMT1	89	65.066	Vulpes_vulpes
ENSIPUG00000002899	trmt1	69	68.776	ENSXETG00000033863	TRMT1	92	67.932	Xenopus_tropicalis
ENSIPUG00000002899	trmt1	87	74.959	ENSXCOG00000015733	trmt1	92	75.124	Xiphophorus_couchianus
ENSIPUG00000002899	trmt1	85	76.451	ENSXMAG00000013823	trmt1	98	76.621	Xiphophorus_maculatus