EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000002916 (Gene tree)
Gene ID: 108266399
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 17598 bases
Position: chr1:35092179-35109776
Accession: 108266399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004122	RRM_1	PF00076.22	1.3e-14	1	2
ENSIPUP00000004122	RRM_1	PF00076.22	1.3e-14	2	2
ENSIPUP00000004184	RRM_1	PF00076.22	1.3e-14	1	2
ENSIPUP00000004184	RRM_1	PF00076.22	1.3e-14	2	2
ENSIPUP00000004197	RRM_1	PF00076.22	1.3e-14	1	2
ENSIPUP00000004197	RRM_1	PF00076.22	1.3e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004395	-	1832	-	ENSIPUP00000004197	503 (aa)	-	A0A2D0R665
ENSIPUT00000004381	-	3474	XM_017469670	ENSIPUP00000004184	503 (aa)	XP_017325159	A0A2D0R665
ENSIPUT00000004318	-	5062	-	ENSIPUP00000004122	503 (aa)	-	A0A2D0R665

Gene Model

Click here to download ENSIPUG00000002916's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000002916's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000002916	rnpc3	95	57.114	ENSG00000185946	RNPC3	96	57.143	Homo_sapiens
ENSIPUG00000002916	rnpc3	99	65.490	ENSAPOG00000017371	rnpc3	99	64.811	Acanthochromis_polyacanthus
ENSIPUG00000002916	rnpc3	97	56.064	ENSAMEG00000001694	RNPC3	94	56.400	Ailuropoda_melanoleuca
ENSIPUG00000002916	rnpc3	99	61.569	ENSACIG00000021043	rnpc3	99	60.196	Amphilophus_citrinellus
ENSIPUG00000002916	rnpc3	99	65.294	ENSAOCG00000014052	rnpc3	98	64.902	Amphiprion_ocellaris
ENSIPUG00000002916	rnpc3	99	65.098	ENSAPEG00000008739	rnpc3	98	64.706	Amphiprion_percula
ENSIPUG00000002916	rnpc3	99	64.466	ENSATEG00000021263	rnpc3	99	63.689	Anabas_testudineus
ENSIPUG00000002916	rnpc3	88	57.175	ENSAPLG00000015605	RNPC3	98	57.079	Anas_platyrhynchos
ENSIPUG00000002916	rnpc3	96	57.113	ENSACAG00000002029	RNPC3	94	57.113	Anolis_carolinensis
ENSIPUG00000002916	rnpc3	95	57.669	ENSANAG00000019950	RNPC3	93	57.669	Aotus_nancymaae
ENSIPUG00000002916	rnpc3	99	63.601	ENSACLG00000014702	rnpc3	99	63.492	Astatotilapia_calliptera
ENSIPUG00000002916	rnpc3	99	75.000	ENSAMXG00000033372	rnpc3	99	76.331	Astyanax_mexicanus
ENSIPUG00000002916	rnpc3	97	56.064	ENSBTAG00000019091	RNPC3	95	56.914	Bos_taurus
ENSIPUG00000002916	rnpc3	95	56.263	ENSCJAG00000035686	RNPC3	93	56.674	Callithrix_jacchus
ENSIPUG00000002916	rnpc3	97	56.375	ENSCAFG00000019972	RNPC3	95	56.513	Canis_familiaris
ENSIPUG00000002916	rnpc3	97	56.375	ENSCAFG00020011300	RNPC3	95	56.513	Canis_lupus_dingo
ENSIPUG00000002916	rnpc3	97	54.871	ENSCHIG00000020361	RNPC3	95	56.713	Capra_hircus
ENSIPUG00000002916	rnpc3	97	57.285	ENSTSYG00000030256	RNPC3	95	57.285	Carlito_syrichta
ENSIPUG00000002916	rnpc3	85	49.321	ENSCAPG00000013600	RNPC3	97	49.083	Cavia_aperea
ENSIPUG00000002916	rnpc3	97	55.929	ENSCPOG00000031638	RNPC3	95	56.375	Cavia_porcellus
ENSIPUG00000002916	rnpc3	95	56.911	ENSCCAG00000024301	RNPC3	93	56.911	Cebus_capucinus
ENSIPUG00000002916	rnpc3	95	57.114	ENSCATG00000002086	RNPC3	93	57.114	Cercocebus_atys
ENSIPUG00000002916	rnpc3	95	43.243	ENSCATG00000035930	-	93	43.958	Cercocebus_atys
ENSIPUG00000002916	rnpc3	97	54.781	ENSCLAG00000005169	RNPC3	95	56.024	Chinchilla_lanigera
ENSIPUG00000002916	rnpc3	95	57.114	ENSCSAG00000001519	RNPC3	93	57.114	Chlorocebus_sabaeus
ENSIPUG00000002916	rnpc3	96	57.873	ENSCPBG00000028311	RNPC3	94	58.896	Chrysemys_picta_bellii
ENSIPUG00000002916	rnpc3	96	37.795	ENSCING00000021276	-	99	39.069	Ciona_intestinalis
ENSIPUG00000002916	rnpc3	94	36.082	ENSCSAVG00000002800	-	73	56.557	Ciona_savignyi
ENSIPUG00000002916	rnpc3	95	56.911	ENSCANG00000031444	RNPC3	93	56.911	Colobus_angolensis_palliatus
ENSIPUG00000002916	rnpc3	97	54.653	ENSCGRG00001019276	Rnpc3	95	55.489	Cricetulus_griseus_chok1gshd
ENSIPUG00000002916	rnpc3	89	52.677	ENSCGRG00000000053	Rnpc3	100	53.564	Cricetulus_griseus_crigri
ENSIPUG00000002916	rnpc3	99	63.126	ENSCSEG00000013475	rnpc3	98	62.725	Cynoglossus_semilaevis
ENSIPUG00000002916	rnpc3	99	62.768	ENSCVAG00000002645	rnpc3	99	62.768	Cyprinodon_variegatus
ENSIPUG00000002916	rnpc3	100	70.334	ENSDARG00000011247	rnpc3	100	70.727	Danio_rerio
ENSIPUG00000002916	rnpc3	98	55.644	ENSDNOG00000047498	-	96	56.287	Dasypus_novemcinctus
ENSIPUG00000002916	rnpc3	98	55.248	ENSDNOG00000044555	-	96	55.888	Dasypus_novemcinctus
ENSIPUG00000002916	rnpc3	97	55.689	ENSDORG00000027343	Rnpc3	95	56.539	Dipodomys_ordii
ENSIPUG00000002916	rnpc3	96	49.804	ENSEBUG00000002068	rnpc3	96	50.299	Eptatretus_burgeri
ENSIPUG00000002916	rnpc3	97	56.827	ENSEASG00005015957	RNPC3	95	56.827	Equus_asinus_asinus
ENSIPUG00000002916	rnpc3	97	56.600	ENSECAG00000021148	RNPC3	95	57.460	Equus_caballus
ENSIPUG00000002916	rnpc3	99	65.643	ENSELUG00000002264	rnpc3	99	65.643	Esox_lucius
ENSIPUG00000002916	rnpc3	99	55.000	ENSFCAG00000024312	RNPC3	98	56.008	Felis_catus
ENSIPUG00000002916	rnpc3	88	57.079	ENSFALG00000002580	RNPC3	97	62.376	Ficedula_albicollis
ENSIPUG00000002916	rnpc3	97	55.070	ENSFDAG00000019948	RNPC3	95	55.912	Fukomys_damarensis
ENSIPUG00000002916	rnpc3	99	60.321	ENSFHEG00000020647	rnpc3	99	60.321	Fundulus_heteroclitus
ENSIPUG00000002916	rnpc3	99	64.625	ENSGMOG00000019213	rnpc3	99	64.950	Gadus_morhua
ENSIPUG00000002916	rnpc3	96	58.230	ENSGALG00000005162	RNPC3	88	58.230	Gallus_gallus
ENSIPUG00000002916	rnpc3	99	61.765	ENSGAFG00000017236	rnpc3	99	61.176	Gambusia_affinis
ENSIPUG00000002916	rnpc3	99	63.889	ENSGACG00000002048	rnpc3	99	63.035	Gasterosteus_aculeatus
ENSIPUG00000002916	rnpc3	96	58.452	ENSGAGG00000008438	RNPC3	94	58.452	Gopherus_agassizii
ENSIPUG00000002916	rnpc3	95	50.208	ENSGGOG00000026201	-	93	50.208	Gorilla_gorilla
ENSIPUG00000002916	rnpc3	82	65.054	ENSHBUG00000015966	rnpc3	85	64.583	Haplochromis_burtoni
ENSIPUG00000002916	rnpc3	97	55.268	ENSHGLG00000001708	RNPC3	95	55.912	Heterocephalus_glaber_female
ENSIPUG00000002916	rnpc3	97	55.268	ENSHGLG00100003005	RNPC3	95	55.912	Heterocephalus_glaber_male
ENSIPUG00000002916	rnpc3	97	64.516	ENSHCOG00000017135	rnpc3	99	63.944	Hippocampus_comes
ENSIPUG00000002916	rnpc3	97	54.076	ENSSTOG00000025020	RNPC3	95	56.112	Ictidomys_tridecemlineatus
ENSIPUG00000002916	rnpc3	97	56.313	ENSJJAG00000010203	Rnpc3	95	57.172	Jaculus_jaculus
ENSIPUG00000002916	rnpc3	99	64.811	ENSKMAG00000017358	rnpc3	99	65.000	Kryptolebias_marmoratus
ENSIPUG00000002916	rnpc3	99	63.529	ENSLBEG00000024901	rnpc3	98	63.333	Labrus_bergylta
ENSIPUG00000002916	rnpc3	98	58.020	ENSLACG00000005720	RNPC3	93	56.778	Latimeria_chalumnae
ENSIPUG00000002916	rnpc3	99	64.016	ENSLOCG00000007986	rnpc3	99	63.147	Lepisosteus_oculatus
ENSIPUG00000002916	rnpc3	97	56.313	ENSLAFG00000032342	RNPC3	95	56.313	Loxodonta_africana
ENSIPUG00000002916	rnpc3	95	43.006	ENSMFAG00000002917	-	93	43.659	Macaca_fascicularis
ENSIPUG00000002916	rnpc3	95	57.114	ENSMFAG00000002004	RNPC3	93	57.114	Macaca_fascicularis
ENSIPUG00000002916	rnpc3	95	56.911	ENSMMUG00000018039	RNPC3	93	56.911	Macaca_mulatta
ENSIPUG00000002916	rnpc3	77	56.373	ENSMMUG00000002098	-	83	56.373	Macaca_mulatta
ENSIPUG00000002916	rnpc3	95	52.823	ENSMNEG00000033950	RNPC3	93	53.659	Macaca_nemestrina
ENSIPUG00000002916	rnpc3	76	46.457	ENSMNEG00000029209	-	82	48.303	Macaca_nemestrina
ENSIPUG00000002916	rnpc3	95	57.114	ENSMLEG00000033628	RNPC3	93	57.114	Mandrillus_leucophaeus
ENSIPUG00000002916	rnpc3	95	43.902	ENSMLEG00000034644	-	93	43.673	Mandrillus_leucophaeus
ENSIPUG00000002916	rnpc3	99	59.369	ENSMAMG00000007496	rnpc3	99	59.369	Mastacembelus_armatus
ENSIPUG00000002916	rnpc3	99	63.424	ENSMZEG00005020233	rnpc3	99	62.646	Maylandia_zebra
ENSIPUG00000002916	rnpc3	88	57.812	ENSMGAG00000006381	RNPC3	98	57.812	Meleagris_gallopavo
ENSIPUG00000002916	rnpc3	97	55.424	ENSMAUG00000001358	Rnpc3	95	56.262	Mesocricetus_auratus
ENSIPUG00000002916	rnpc3	97	57.056	ENSMICG00000029591	RNPC3	95	57.056	Microcebus_murinus
ENSIPUG00000002916	rnpc3	97	55.842	ENSMOCG00000013423	Rnpc3	95	56.487	Microtus_ochrogaster
ENSIPUG00000002916	rnpc3	99	61.355	ENSMMOG00000005309	rnpc3	99	60.835	Mola_mola
ENSIPUG00000002916	rnpc3	96	56.612	ENSMODG00000002946	RNPC3	94	56.612	Monodelphis_domestica
ENSIPUG00000002916	rnpc3	98	61.067	ENSMALG00000015471	rnpc3	99	60.819	Monopterus_albus
ENSIPUG00000002916	rnpc3	97	56.389	MGP_CAROLIEiJ_G0025555	Rnpc3	96	56.389	Mus_caroli
ENSIPUG00000002916	rnpc3	97	54.960	ENSMUSG00000027981	Rnpc3	99	54.757	Mus_musculus
ENSIPUG00000002916	rnpc3	97	54.563	MGP_PahariEiJ_G0027001	Rnpc3	96	55.400	Mus_pahari
ENSIPUG00000002916	rnpc3	97	54.365	MGP_SPRETEiJ_G0026505	Rnpc3	96	55.400	Mus_spretus
ENSIPUG00000002916	rnpc3	97	56.914	ENSMPUG00000007349	RNPC3	95	56.914	Mustela_putorius_furo
ENSIPUG00000002916	rnpc3	97	56.137	ENSMLUG00000028743	RNPC3	95	56.998	Myotis_lucifugus
ENSIPUG00000002916	rnpc3	97	55.268	ENSNGAG00000010939	Rnpc3	95	56.112	Nannospalax_galili
ENSIPUG00000002916	rnpc3	99	63.796	ENSNBRG00000012196	rnpc3	96	63.492	Neolamprologus_brichardi
ENSIPUG00000002916	rnpc3	95	58.078	ENSNLEG00000012013	RNPC3	93	58.078	Nomascus_leucogenys
ENSIPUG00000002916	rnpc3	97	56.522	ENSODEG00000007612	RNPC3	95	56.478	Octodon_degus
ENSIPUG00000002916	rnpc3	99	64.314	ENSONIG00000004770	rnpc3	100	65.440	Oreochromis_niloticus
ENSIPUG00000002916	rnpc3	92	56.448	ENSOANG00000008220	RNPC3	99	57.839	Ornithorhynchus_anatinus
ENSIPUG00000002916	rnpc3	97	55.512	ENSOCUG00000004016	RNPC3	95	57.086	Oryctolagus_cuniculus
ENSIPUG00000002916	rnpc3	99	63.745	ENSORLG00000005694	rnpc3	99	64.143	Oryzias_latipes
ENSIPUG00000002916	rnpc3	99	63.960	ENSORLG00020005513	rnpc3	99	64.554	Oryzias_latipes_hni
ENSIPUG00000002916	rnpc3	99	63.872	ENSORLG00015002179	rnpc3	99	64.271	Oryzias_latipes_hsok
ENSIPUG00000002916	rnpc3	97	57.114	ENSOGAG00000026182	RNPC3	95	57.114	Otolemur_garnettii
ENSIPUG00000002916	rnpc3	97	54.871	ENSOARG00000018719	RNPC3	95	56.713	Ovis_aries
ENSIPUG00000002916	rnpc3	95	57.906	ENSPPAG00000037459	RNPC3	93	57.906	Pan_paniscus
ENSIPUG00000002916	rnpc3	95	49.792	ENSPPAG00000030278	-	93	49.792	Pan_paniscus
ENSIPUG00000002916	rnpc3	99	55.405	ENSPPRG00000020246	RNPC3	98	56.420	Panthera_pardus
ENSIPUG00000002916	rnpc3	99	55.405	ENSPTIG00000009887	RNPC3	99	56.420	Panthera_tigris_altaica
ENSIPUG00000002916	rnpc3	95	57.114	ENSPTRG00000033902	RNPC3	93	57.114	Pan_troglodytes
ENSIPUG00000002916	rnpc3	94	49.895	ENSPTRG00000044227	-	93	49.263	Pan_troglodytes
ENSIPUG00000002916	rnpc3	95	57.114	ENSPANG00000012137	RNPC3	93	57.114	Papio_anubis
ENSIPUG00000002916	rnpc3	95	46.901	ENSPANG00000029957	-	95	46.791	Papio_anubis
ENSIPUG00000002916	rnpc3	97	64.683	ENSPKIG00000008828	rnpc3	97	65.657	Paramormyrops_kingsleyae
ENSIPUG00000002916	rnpc3	63	55.108	ENSPSIG00000007396	RNPC3	98	55.418	Pelodiscus_sinensis
ENSIPUG00000002916	rnpc3	97	59.476	ENSPMGG00000011742	rnpc3	97	59.879	Periophthalmus_magnuspinnatus
ENSIPUG00000002916	rnpc3	90	54.292	ENSPEMG00000020112	Rnpc3	100	54.409	Peromyscus_maniculatus_bairdii
ENSIPUG00000002916	rnpc3	98	56.073	ENSPCIG00000004415	-	95	55.870	Phascolarctos_cinereus
ENSIPUG00000002916	rnpc3	99	62.549	ENSPFOG00000009895	rnpc3	99	60.784	Poecilia_formosa
ENSIPUG00000002916	rnpc3	99	62.549	ENSPLAG00000012023	rnpc3	99	61.328	Poecilia_latipinna
ENSIPUG00000002916	rnpc3	99	62.549	ENSPMEG00000003663	rnpc3	98	61.840	Poecilia_mexicana
ENSIPUG00000002916	rnpc3	99	62.008	ENSPREG00000010206	rnpc3	99	61.373	Poecilia_reticulata
ENSIPUG00000002916	rnpc3	80	52.518	ENSPPYG00000001102	RNPC3	93	52.518	Pongo_abelii
ENSIPUG00000002916	rnpc3	99	63.601	ENSPNYG00000020603	rnpc3	99	63.492	Pundamilia_nyererei
ENSIPUG00000002916	rnpc3	99	67.181	ENSPNAG00000000524	rnpc3	92	67.181	Pygocentrus_nattereri
ENSIPUG00000002916	rnpc3	97	55.888	ENSRNOG00000017310	Rnpc3	95	55.888	Rattus_norvegicus
ENSIPUG00000002916	rnpc3	95	54.209	ENSRBIG00000043897	RNPC3	93	54.209	Rhinopithecus_bieti
ENSIPUG00000002916	rnpc3	95	57.114	ENSRROG00000032334	RNPC3	93	57.114	Rhinopithecus_roxellana
ENSIPUG00000002916	rnpc3	95	56.707	ENSSBOG00000024473	RNPC3	94	56.707	Saimiri_boliviensis_boliviensis
ENSIPUG00000002916	rnpc3	96	56.289	ENSSHAG00000011859	RNPC3	94	56.315	Sarcophilus_harrisii
ENSIPUG00000002916	rnpc3	99	67.653	ENSSFOG00015013055	rnpc3	99	68.283	Scleropages_formosus
ENSIPUG00000002916	rnpc3	99	62.718	ENSSMAG00000020346	rnpc3	99	64.660	Scophthalmus_maximus
ENSIPUG00000002916	rnpc3	99	65.887	ENSSDUG00000006600	rnpc3	99	65.497	Seriola_dumerili
ENSIPUG00000002916	rnpc3	99	65.692	ENSSLDG00000007979	rnpc3	99	65.692	Seriola_lalandi_dorsalis
ENSIPUG00000002916	rnpc3	99	65.269	ENSSPAG00000005633	rnpc3	99	65.600	Stegastes_partitus
ENSIPUG00000002916	rnpc3	97	56.539	ENSSSCG00000037254	RNPC3	95	56.740	Sus_scrofa
ENSIPUG00000002916	rnpc3	88	57.658	ENSTGUG00000004795	-	98	57.207	Taeniopygia_guttata
ENSIPUG00000002916	rnpc3	99	64.229	ENSTNIG00000018963	rnpc3	99	63.419	Tetraodon_nigroviridis
ENSIPUG00000002916	rnpc3	97	56.574	ENSUMAG00000007775	RNPC3	96	56.914	Ursus_maritimus
ENSIPUG00000002916	rnpc3	97	56.375	ENSVVUG00000000331	RNPC3	95	56.513	Vulpes_vulpes
ENSIPUG00000002916	rnpc3	97	46.245	ENSXETG00000025027	rnpc3	97	43.678	Xenopus_tropicalis
ENSIPUG00000002916	rnpc3	99	62.427	ENSXCOG00000005013	rnpc3	99	62.231	Xiphophorus_couchianus
ENSIPUG00000002916	rnpc3	99	62.549	ENSXMAG00000006495	rnpc3	99	61.373	Xiphophorus_maculatus