EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003083 (Gene tree)
Gene ID: 108278452
Gene Symbol: snrpd3
Alias: wu:fa18f04|zgc:56125
Full Name: small nuclear ribonucleoprotein D3 polypeptide
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4365 bases
Position: chr18:18645042-18649406
Accession: 108278452
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004414	LSM	PF01423.22	1.5e-15	1	1
ENSIPUP00000004407	LSM	PF01423.22	1.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004611	-	2881	-	ENSIPUP00000004407	138 (aa)	-	-
ENSIPUT00000004618	-	1206	XM_017491845	ENSIPUP00000004414	128 (aa)	XP_017347334	A0A2D0SXC3

Gene Model

Click here to download ENSIPUG00000003083's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003083's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003083	snrpd3	74	32.039	ENSIPUG00000005368	Lsm4	51	34.722
ENSIPUG00000003083	snrpd3	60	31.325	ENSIPUG00000003576	snrpd1	56	33.803

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003083	snrpd3	100	96.094	ENSG00000100028	SNRPD3	98	100.000	Homo_sapiens
ENSIPUG00000003083	snrpd3	100	96.875	ENSAPOG00000007512	snrpd3l	100	96.875	Acanthochromis_polyacanthus
ENSIPUG00000003083	snrpd3	100	96.094	ENSAMEG00000013935	SNRPD3	100	96.094	Ailuropoda_melanoleuca
ENSIPUG00000003083	snrpd3	100	96.875	ENSACIG00000008871	snrpd3l	100	96.875	Amphilophus_citrinellus
ENSIPUG00000003083	snrpd3	83	98.113	ENSAOCG00000016759	-	100	97.222	Amphiprion_ocellaris
ENSIPUG00000003083	snrpd3	100	96.875	ENSAOCG00000008497	SNRPD3	100	96.875	Amphiprion_ocellaris
ENSIPUG00000003083	snrpd3	100	96.875	ENSAOCG00000016743	snrpd3l	100	96.875	Amphiprion_ocellaris
ENSIPUG00000003083	snrpd3	100	96.875	ENSAOCG00000022442	-	100	96.875	Amphiprion_ocellaris
ENSIPUG00000003083	snrpd3	100	96.875	ENSAPEG00000006273	snrpd3l	100	96.875	Amphiprion_percula
ENSIPUG00000003083	snrpd3	83	98.113	ENSAPEG00000006260	-	100	97.222	Amphiprion_percula
ENSIPUG00000003083	snrpd3	100	96.875	ENSATEG00000020556	snrpd3l	91	96.875	Anabas_testudineus
ENSIPUG00000003083	snrpd3	100	96.094	ENSAPLG00000008670	SNRPD3	100	96.094	Anas_platyrhynchos
ENSIPUG00000003083	snrpd3	100	96.094	ENSANAG00000026106	SNRPD3	100	96.094	Aotus_nancymaae
ENSIPUG00000003083	snrpd3	100	96.875	ENSACLG00000021295	snrpd3l	100	96.875	Astatotilapia_calliptera
ENSIPUG00000003083	snrpd3	100	97.656	ENSAMXG00000038984	snrpd3l	100	97.656	Astyanax_mexicanus
ENSIPUG00000003083	snrpd3	100	96.094	ENSBTAG00000021262	SNRPD3	100	96.094	Bos_taurus
ENSIPUG00000003083	snrpd3	94	62.400	WBGene00004914	snr-1	63	74.118	Caenorhabditis_elegans
ENSIPUG00000003083	snrpd3	100	96.094	ENSCJAG00000009630	SNRPD3	100	96.094	Callithrix_jacchus
ENSIPUG00000003083	snrpd3	100	96.094	ENSCAFG00000013864	-	100	96.094	Canis_familiaris
ENSIPUG00000003083	snrpd3	100	95.312	ENSCAFG00000017258	-	100	95.312	Canis_familiaris
ENSIPUG00000003083	snrpd3	100	96.094	ENSCAFG00020007165	-	100	96.094	Canis_lupus_dingo
ENSIPUG00000003083	snrpd3	100	96.094	ENSCHIG00000000057	SNRPD3	100	96.094	Capra_hircus
ENSIPUG00000003083	snrpd3	100	96.094	ENSTSYG00000007649	SNRPD3	100	96.094	Carlito_syrichta
ENSIPUG00000003083	snrpd3	100	96.094	ENSCAPG00000016432	-	100	96.094	Cavia_aperea
ENSIPUG00000003083	snrpd3	100	96.094	ENSCPOG00000033102	-	100	96.094	Cavia_porcellus
ENSIPUG00000003083	snrpd3	100	96.094	ENSCCAG00000035006	SNRPD3	100	96.094	Cebus_capucinus
ENSIPUG00000003083	snrpd3	100	96.094	ENSCATG00000038878	SNRPD3	100	96.094	Cercocebus_atys
ENSIPUG00000003083	snrpd3	100	96.094	ENSCLAG00000011403	SNRPD3	100	96.094	Chinchilla_lanigera
ENSIPUG00000003083	snrpd3	100	96.094	ENSCSAG00000010694	SNRPD3	100	96.094	Chlorocebus_sabaeus
ENSIPUG00000003083	snrpd3	100	96.094	ENSCPBG00000002065	SNRPD3	100	96.094	Chrysemys_picta_bellii
ENSIPUG00000003083	snrpd3	84	79.439	ENSCSAVG00000004708	-	80	78.505	Ciona_savignyi
ENSIPUG00000003083	snrpd3	100	96.094	ENSCANG00000032106	SNRPD3	100	96.094	Colobus_angolensis_palliatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSCGRG00001021990	Snrpd3	100	96.094	Cricetulus_griseus_chok1gshd
ENSIPUG00000003083	snrpd3	100	96.094	ENSCGRG00000004280	Snrpd3	100	96.094	Cricetulus_griseus_crigri
ENSIPUG00000003083	snrpd3	100	96.094	ENSCVAG00000001276	snrpd3l	100	96.094	Cyprinodon_variegatus
ENSIPUG00000003083	snrpd3	100	98.438	ENSDARG00000076283	snrpd3l	100	98.438	Danio_rerio
ENSIPUG00000003083	snrpd3	100	95.312	ENSDARG00000013800	snrpd3	100	95.312	Danio_rerio
ENSIPUG00000003083	snrpd3	100	96.094	ENSDNOG00000047424	-	100	96.094	Dasypus_novemcinctus
ENSIPUG00000003083	snrpd3	100	86.260	ENSDNOG00000018004	-	100	85.496	Dasypus_novemcinctus
ENSIPUG00000003083	snrpd3	97	74.194	ENSDNOG00000042638	-	100	74.194	Dasypus_novemcinctus
ENSIPUG00000003083	snrpd3	88	87.500	ENSDORG00000002800	-	100	86.607	Dipodomys_ordii
ENSIPUG00000003083	snrpd3	100	81.250	ENSDORG00000027706	-	100	80.469	Dipodomys_ordii
ENSIPUG00000003083	snrpd3	100	71.094	ENSDORG00000027169	-	100	69.531	Dipodomys_ordii
ENSIPUG00000003083	snrpd3	83	83.962	FBgn0023167	SmD3	71	83.178	Drosophila_melanogaster
ENSIPUG00000003083	snrpd3	100	96.094	ENSEASG00005000273	SNRPD3	100	96.094	Equus_asinus_asinus
ENSIPUG00000003083	snrpd3	100	96.094	ENSECAG00000023316	SNRPD3	100	96.094	Equus_caballus
ENSIPUG00000003083	snrpd3	100	95.312	ENSEEUG00000015518	SNRPD3	100	95.312	Erinaceus_europaeus
ENSIPUG00000003083	snrpd3	100	96.094	ENSELUG00000001854	snrpd3	100	96.094	Esox_lucius
ENSIPUG00000003083	snrpd3	100	96.875	ENSELUG00000010092	snrpd3l	100	96.875	Esox_lucius
ENSIPUG00000003083	snrpd3	100	96.094	ENSFCAG00000001512	SNRPD3	100	96.094	Felis_catus
ENSIPUG00000003083	snrpd3	100	96.094	ENSFALG00000007303	SNRPD3	100	96.094	Ficedula_albicollis
ENSIPUG00000003083	snrpd3	100	96.094	ENSFDAG00000010772	SNRPD3	100	96.094	Fukomys_damarensis
ENSIPUG00000003083	snrpd3	100	96.875	ENSFHEG00000010754	snrpd3l	100	96.875	Fundulus_heteroclitus
ENSIPUG00000003083	snrpd3	100	96.124	ENSGMOG00000008469	snrpd3l	100	96.124	Gadus_morhua
ENSIPUG00000003083	snrpd3	100	96.094	ENSGALG00000006596	SNRPD3	100	96.094	Gallus_gallus
ENSIPUG00000003083	snrpd3	83	98.113	ENSGAFG00000006661	snrpd3l	88	93.913	Gambusia_affinis
ENSIPUG00000003083	snrpd3	100	96.124	ENSGACG00000017533	snrpd3l	100	96.124	Gasterosteus_aculeatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSGAGG00000023325	SNRPD3	100	96.094	Gopherus_agassizii
ENSIPUG00000003083	snrpd3	100	96.094	ENSGGOG00000015640	SNRPD3	100	96.094	Gorilla_gorilla
ENSIPUG00000003083	snrpd3	100	96.875	ENSHBUG00000001332	snrpd3l	100	96.875	Haplochromis_burtoni
ENSIPUG00000003083	snrpd3	100	96.094	ENSHGLG00000016496	SNRPD3	100	96.094	Heterocephalus_glaber_female
ENSIPUG00000003083	snrpd3	99	92.913	ENSHGLG00000009844	-	99	91.339	Heterocephalus_glaber_female
ENSIPUG00000003083	snrpd3	100	96.094	ENSHGLG00100019304	SNRPD3	100	96.094	Heterocephalus_glaber_male
ENSIPUG00000003083	snrpd3	99	92.913	ENSHGLG00100011326	-	99	91.339	Heterocephalus_glaber_male
ENSIPUG00000003083	snrpd3	100	96.094	ENSHCOG00000014396	snrpd3l	100	96.094	Hippocampus_comes
ENSIPUG00000003083	snrpd3	100	96.094	ENSSTOG00000025674	SNRPD3	100	96.094	Ictidomys_tridecemlineatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSJJAG00000013303	Snrpd3	100	96.094	Jaculus_jaculus
ENSIPUG00000003083	snrpd3	100	96.875	ENSKMAG00000012493	snrpd3l	100	96.875	Kryptolebias_marmoratus
ENSIPUG00000003083	snrpd3	100	96.875	ENSLBEG00000003202	snrpd3l	100	96.875	Labrus_bergylta
ENSIPUG00000003083	snrpd3	100	95.312	ENSLACG00000015192	SNRPD3	100	95.312	Latimeria_chalumnae
ENSIPUG00000003083	snrpd3	100	96.875	ENSLOCG00000006978	snrpd3	100	96.875	Lepisosteus_oculatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSLAFG00000028180	SNRPD3	100	96.094	Loxodonta_africana
ENSIPUG00000003083	snrpd3	100	96.094	ENSMFAG00000033628	SNRPD3	100	96.094	Macaca_fascicularis
ENSIPUG00000003083	snrpd3	100	96.094	ENSMMUG00000000264	SNRPD3	100	96.094	Macaca_mulatta
ENSIPUG00000003083	snrpd3	100	96.094	ENSMNEG00000020857	SNRPD3	100	96.094	Macaca_nemestrina
ENSIPUG00000003083	snrpd3	100	96.094	ENSMLEG00000037548	SNRPD3	100	96.094	Mandrillus_leucophaeus
ENSIPUG00000003083	snrpd3	100	96.875	ENSMZEG00005017664	snrpd3l	100	96.875	Maylandia_zebra
ENSIPUG00000003083	snrpd3	100	96.094	ENSMAUG00000021393	Snrpd3	100	96.094	Mesocricetus_auratus
ENSIPUG00000003083	snrpd3	100	96.094	ENSMICG00000034782	SNRPD3	100	96.094	Microcebus_murinus
ENSIPUG00000003083	snrpd3	100	96.094	ENSMOCG00000009361	Snrpd3	100	96.094	Microtus_ochrogaster
ENSIPUG00000003083	snrpd3	83	98.113	ENSMMOG00000020985	snrpd3l	68	97.222	Mola_mola
ENSIPUG00000003083	snrpd3	100	96.094	ENSMODG00000004024	SNRPD3	100	96.094	Monodelphis_domestica
ENSIPUG00000003083	snrpd3	100	96.875	ENSMALG00000013334	snrpd3l	100	96.875	Monopterus_albus
ENSIPUG00000003083	snrpd3	100	96.094	MGP_CAROLIEiJ_G0015441	Snrpd3	100	96.094	Mus_caroli
ENSIPUG00000003083	snrpd3	100	96.094	ENSMUSG00000020180	Snrpd3	100	96.094	Mus_musculus
ENSIPUG00000003083	snrpd3	100	96.094	MGP_PahariEiJ_G0030857	Snrpd3	100	96.094	Mus_pahari
ENSIPUG00000003083	snrpd3	100	96.094	MGP_SPRETEiJ_G0016254	Snrpd3	100	96.094	Mus_spretus
ENSIPUG00000003083	snrpd3	100	96.094	ENSMPUG00000002889	SNRPD3	100	96.094	Mustela_putorius_furo
ENSIPUG00000003083	snrpd3	100	96.094	ENSMLUG00000009838	SNRPD3	100	96.094	Myotis_lucifugus
ENSIPUG00000003083	snrpd3	100	96.094	ENSNGAG00000010328	Snrpd3	100	96.094	Nannospalax_galili
ENSIPUG00000003083	snrpd3	100	96.875	ENSNBRG00000020307	snrpd3l	100	96.875	Neolamprologus_brichardi
ENSIPUG00000003083	snrpd3	100	96.094	ENSNLEG00000035757	SNRPD3	100	96.094	Nomascus_leucogenys
ENSIPUG00000003083	snrpd3	100	96.094	ENSMEUG00000003772	SNRPD3	100	96.094	Notamacropus_eugenii
ENSIPUG00000003083	snrpd3	100	96.094	ENSOPRG00000005763	SNRPD3	100	96.094	Ochotona_princeps
ENSIPUG00000003083	snrpd3	100	92.969	ENSODEG00000020162	-	100	91.406	Octodon_degus
ENSIPUG00000003083	snrpd3	100	95.312	ENSODEG00000019354	-	100	95.312	Octodon_degus
ENSIPUG00000003083	snrpd3	100	96.094	ENSODEG00000008064	-	100	96.094	Octodon_degus
ENSIPUG00000003083	snrpd3	100	96.875	ENSONIG00000003828	snrpd3l	100	96.875	Oreochromis_niloticus
ENSIPUG00000003083	snrpd3	100	96.094	ENSOANG00000002463	SNRPD3	100	96.094	Ornithorhynchus_anatinus
ENSIPUG00000003083	snrpd3	100	96.094	ENSOCUG00000004845	SNRPD3	100	96.094	Oryctolagus_cuniculus
ENSIPUG00000003083	snrpd3	100	96.875	ENSORLG00000010586	snrpd3l	100	96.875	Oryzias_latipes
ENSIPUG00000003083	snrpd3	100	96.875	ENSORLG00020011769	snrpd3l	100	96.875	Oryzias_latipes_hni
ENSIPUG00000003083	snrpd3	100	96.875	ENSORLG00015022940	snrpd3l	100	96.875	Oryzias_latipes_hsok
ENSIPUG00000003083	snrpd3	100	96.875	ENSOMEG00000022734	snrpd3l	100	96.875	Oryzias_melastigma
ENSIPUG00000003083	snrpd3	100	96.094	ENSOGAG00000012708	SNRPD3	100	96.094	Otolemur_garnettii
ENSIPUG00000003083	snrpd3	100	96.094	ENSOARG00000013984	SNRPD3	100	96.094	Ovis_aries
ENSIPUG00000003083	snrpd3	100	96.094	ENSPPAG00000039191	SNRPD3	100	96.094	Pan_paniscus
ENSIPUG00000003083	snrpd3	100	96.094	ENSPPRG00000001470	SNRPD3	100	96.094	Panthera_pardus
ENSIPUG00000003083	snrpd3	100	96.094	ENSPTIG00000016610	SNRPD3	100	96.094	Panthera_tigris_altaica
ENSIPUG00000003083	snrpd3	100	96.094	ENSPTRG00000014176	SNRPD3	100	96.094	Pan_troglodytes
ENSIPUG00000003083	snrpd3	100	96.094	ENSPANG00000009279	SNRPD3	100	96.094	Papio_anubis
ENSIPUG00000003083	snrpd3	100	95.312	ENSPKIG00000006412	snrpd3l	100	95.312	Paramormyrops_kingsleyae
ENSIPUG00000003083	snrpd3	100	94.531	ENSPSIG00000010022	-	100	94.531	Pelodiscus_sinensis
ENSIPUG00000003083	snrpd3	84	97.222	ENSPMGG00000004486	snrpd3l	88	97.222	Periophthalmus_magnuspinnatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSPCIG00000010910	SNRPD3	84	96.094	Phascolarctos_cinereus
ENSIPUG00000003083	snrpd3	100	96.875	ENSPFOG00000019673	snrpd3l	100	96.875	Poecilia_formosa
ENSIPUG00000003083	snrpd3	100	96.875	ENSPLAG00000023249	snrpd3l	100	96.875	Poecilia_latipinna
ENSIPUG00000003083	snrpd3	100	96.875	ENSPMEG00000008482	snrpd3l	100	96.875	Poecilia_mexicana
ENSIPUG00000003083	snrpd3	83	98.113	ENSPREG00000007532	snrpd3l	99	89.256	Poecilia_reticulata
ENSIPUG00000003083	snrpd3	100	96.094	ENSPPYG00000011648	SNRPD3	100	96.094	Pongo_abelii
ENSIPUG00000003083	snrpd3	100	96.094	ENSPCAG00000002065	SNRPD3	100	96.094	Procavia_capensis
ENSIPUG00000003083	snrpd3	100	96.094	ENSPCOG00000011842	SNRPD3	100	96.094	Propithecus_coquereli
ENSIPUG00000003083	snrpd3	100	95.312	ENSPVAG00000011405	SNRPD3	100	95.312	Pteropus_vampyrus
ENSIPUG00000003083	snrpd3	100	96.875	ENSPNYG00000013344	snrpd3l	100	96.875	Pundamilia_nyererei
ENSIPUG00000003083	snrpd3	100	96.094	ENSPNAG00000010547	snrpd3	100	96.094	Pygocentrus_nattereri
ENSIPUG00000003083	snrpd3	100	96.875	ENSPNAG00000008683	snrpd3l	100	96.875	Pygocentrus_nattereri
ENSIPUG00000003083	snrpd3	100	96.094	ENSRNOG00000050410	Snrpd3	100	96.094	Rattus_norvegicus
ENSIPUG00000003083	snrpd3	100	96.094	ENSRBIG00000029017	SNRPD3	100	96.094	Rhinopithecus_bieti
ENSIPUG00000003083	snrpd3	100	96.094	ENSRROG00000031152	SNRPD3	100	96.094	Rhinopithecus_roxellana
ENSIPUG00000003083	snrpd3	74	47.368	YLR147C	SMD3	80	50.617	Saccharomyces_cerevisiae
ENSIPUG00000003083	snrpd3	100	98.438	ENSSFOG00015007002	snrpd3l	100	98.438	Scleropages_formosus
ENSIPUG00000003083	snrpd3	100	96.094	ENSSFOG00015014180	snrpd3l	100	96.094	Scleropages_formosus
ENSIPUG00000003083	snrpd3	100	96.875	ENSSMAG00000019307	snrpd3l	100	96.875	Scophthalmus_maximus
ENSIPUG00000003083	snrpd3	100	96.875	ENSSDUG00000006870	snrpd3l	100	96.875	Seriola_dumerili
ENSIPUG00000003083	snrpd3	100	96.875	ENSSLDG00000022664	snrpd3l	100	96.875	Seriola_lalandi_dorsalis
ENSIPUG00000003083	snrpd3	100	96.094	ENSSARG00000002357	SNRPD3	100	96.094	Sorex_araneus
ENSIPUG00000003083	snrpd3	100	95.312	ENSSPUG00000014285	SNRPD3	100	95.312	Sphenodon_punctatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSSSCG00000010058	SNRPD3	100	96.094	Sus_scrofa
ENSIPUG00000003083	snrpd3	100	96.094	ENSTGUG00000010079	SNRPD3	100	96.094	Taeniopygia_guttata
ENSIPUG00000003083	snrpd3	83	98.113	ENSTRUG00000023976	snrpd3l	92	97.222	Takifugu_rubripes
ENSIPUG00000003083	snrpd3	100	96.875	ENSTNIG00000005323	snrpd3l	100	96.875	Tetraodon_nigroviridis
ENSIPUG00000003083	snrpd3	100	96.094	ENSTBEG00000014334	SNRPD3	100	96.094	Tupaia_belangeri
ENSIPUG00000003083	snrpd3	100	96.094	ENSTTRG00000006022	SNRPD3	100	96.094	Tursiops_truncatus
ENSIPUG00000003083	snrpd3	100	96.094	ENSUAMG00000010767	SNRPD3	100	96.094	Ursus_americanus
ENSIPUG00000003083	snrpd3	100	96.094	ENSUMAG00000001670	SNRPD3	100	96.094	Ursus_maritimus
ENSIPUG00000003083	snrpd3	100	96.094	ENSVPAG00000000241	SNRPD3	100	96.094	Vicugna_pacos
ENSIPUG00000003083	snrpd3	83	98.113	ENSVVUG00000019340	SNRPD3	53	98.131	Vulpes_vulpes
ENSIPUG00000003083	snrpd3	100	81.955	ENSXETG00000024918	snrpd3	100	80.451	Xenopus_tropicalis
ENSIPUG00000003083	snrpd3	100	96.875	ENSXCOG00000004795	snrpd3l	100	96.875	Xiphophorus_couchianus
ENSIPUG00000003083	snrpd3	100	96.875	ENSXMAG00000001133	snrpd3l	100	96.875	Xiphophorus_maculatus