EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000003194 (Gene tree)
Gene ID: 108268413
Gene Symbol: gar1
Alias: nola1|zgc:56086
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 1445 bases
Position: chr8:28239960-28241404
Accession: 108268413
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004555	Gar1	PF04410.14	6.7e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004761	-	636	XM_017473370	ENSIPUP00000004555	211 (aa)	XP_017328859	-

Gene Model

Click here to download ENSIPUG00000003194's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003194's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003194	gar1	51	91.589	ENSG00000109534	GAR1	62	84.444	Homo_sapiens
ENSIPUG00000003194	gar1	51	96.296	ENSAPOG00000019754	gar1	52	96.364	Acanthochromis_polyacanthus
ENSIPUG00000003194	gar1	51	90.654	ENSAMEG00000004605	GAR1	54	89.091	Ailuropoda_melanoleuca
ENSIPUG00000003194	gar1	51	96.296	ENSAOCG00000020947	gar1	51	96.364	Amphiprion_ocellaris
ENSIPUG00000003194	gar1	51	96.296	ENSAPEG00000001676	gar1	51	96.364	Amphiprion_percula
ENSIPUG00000003194	gar1	51	95.370	ENSATEG00000003733	gar1	51	95.455	Anabas_testudineus
ENSIPUG00000003194	gar1	50	88.679	ENSAPLG00000010926	GAR1	59	88.679	Anas_platyrhynchos
ENSIPUG00000003194	gar1	50	89.623	ENSACAG00000010031	GAR1	50	89.623	Anolis_carolinensis
ENSIPUG00000003194	gar1	51	91.589	ENSANAG00000021608	GAR1	50	90.000	Aotus_nancymaae
ENSIPUG00000003194	gar1	52	95.455	ENSACLG00000010029	gar1	74	80.000	Astatotilapia_calliptera
ENSIPUG00000003194	gar1	52	91.818	ENSAMXG00000015752	gar1	62	87.943	Astyanax_mexicanus
ENSIPUG00000003194	gar1	63	85.714	ENSBTAG00000000748	GAR1	52	90.000	Bos_taurus
ENSIPUG00000003194	gar1	51	91.589	ENSCJAG00000004041	GAR1	50	90.000	Callithrix_jacchus
ENSIPUG00000003194	gar1	63	85.714	ENSCHIG00000016026	-	53	90.000	Capra_hircus
ENSIPUG00000003194	gar1	79	71.212	ENSCHIG00000011049	-	55	77.273	Capra_hircus
ENSIPUG00000003194	gar1	51	91.589	ENSTSYG00000013668	-	64	84.444	Carlito_syrichta
ENSIPUG00000003194	gar1	51	83.178	ENSTSYG00000026632	-	56	81.818	Carlito_syrichta
ENSIPUG00000003194	gar1	52	90.000	ENSCPOG00000004216	GAR1	51	90.000	Cavia_porcellus
ENSIPUG00000003194	gar1	51	91.589	ENSCCAG00000029372	GAR1	50	90.000	Cebus_capucinus
ENSIPUG00000003194	gar1	52	90.000	ENSCATG00000021854	GAR1	56	90.000	Cercocebus_atys
ENSIPUG00000003194	gar1	52	89.091	ENSCLAG00000005335	GAR1	69	94.545	Chinchilla_lanigera
ENSIPUG00000003194	gar1	51	89.720	ENSCSAG00000003922	GAR1	56	90.000	Chlorocebus_sabaeus
ENSIPUG00000003194	gar1	60	82.540	ENSCPBG00000004310	GAR1	56	90.000	Chrysemys_picta_bellii
ENSIPUG00000003194	gar1	73	56.774	ENSCING00000005744	-	52	66.981	Ciona_intestinalis
ENSIPUG00000003194	gar1	72	54.605	ENSCSAVG00000006355	-	75	54.605	Ciona_savignyi
ENSIPUG00000003194	gar1	52	89.091	ENSCANG00000039262	GAR1	51	89.091	Colobus_angolensis_palliatus
ENSIPUG00000003194	gar1	58	87.705	ENSCGRG00001003919	Gar1	50	91.818	Cricetulus_griseus_chok1gshd
ENSIPUG00000003194	gar1	51	94.444	ENSCSEG00000003525	gar1	50	94.545	Cynoglossus_semilaevis
ENSIPUG00000003194	gar1	51	96.296	ENSCVAG00000002103	gar1	53	96.364	Cyprinodon_variegatus
ENSIPUG00000003194	gar1	51	91.589	ENSDNOG00000037632	GAR1	56	90.000	Dasypus_novemcinctus
ENSIPUG00000003194	gar1	74	76.923	ENSDORG00000000482	Gar1	51	89.091	Dipodomys_ordii
ENSIPUG00000003194	gar1	64	84.559	ENSEASG00005004658	GAR1	63	85.185	Equus_asinus_asinus
ENSIPUG00000003194	gar1	64	83.824	ENSECAG00000013624	GAR1	69	84.444	Equus_caballus
ENSIPUG00000003194	gar1	51	55.140	ENSFCAG00000025841	-	52	57.273	Felis_catus
ENSIPUG00000003194	gar1	63	84.962	ENSFCAG00000040791	-	53	90.000	Felis_catus
ENSIPUG00000003194	gar1	53	95.495	ENSFHEG00000008068	gar1	51	95.455	Fundulus_heteroclitus
ENSIPUG00000003194	gar1	60	82.540	ENSGAGG00000004393	GAR1	55	90.741	Gopherus_agassizii
ENSIPUG00000003194	gar1	51	92.523	ENSGGOG00000008681	GAR1	62	85.185	Gorilla_gorilla
ENSIPUG00000003194	gar1	65	64.234	ENSGGOG00000036205	-	54	71.560	Gorilla_gorilla
ENSIPUG00000003194	gar1	72	78.289	ENSHGLG00000000493	GAR1	72	96.364	Heterocephalus_glaber_female
ENSIPUG00000003194	gar1	51	93.519	ENSHCOG00000008656	gar1	50	93.578	Hippocampus_comes
ENSIPUG00000003194	gar1	52	88.991	ENSSTOG00000005577	GAR1	71	94.545	Ictidomys_tridecemlineatus
ENSIPUG00000003194	gar1	66	81.429	ENSJJAG00000010063	Gar1	61	83.704	Jaculus_jaculus
ENSIPUG00000003194	gar1	53	91.892	ENSKMAG00000010402	gar1	52	92.727	Kryptolebias_marmoratus
ENSIPUG00000003194	gar1	50	88.679	ENSLACG00000003306	GAR1	64	88.679	Latimeria_chalumnae
ENSIPUG00000003194	gar1	63	72.727	ENSMFAG00000003572	-	63	72.656	Macaca_fascicularis
ENSIPUG00000003194	gar1	52	90.000	ENSMFAG00000024592	GAR1	51	90.000	Macaca_fascicularis
ENSIPUG00000003194	gar1	51	79.630	ENSMMUG00000038929	-	53	72.794	Macaca_mulatta
ENSIPUG00000003194	gar1	52	90.000	ENSMMUG00000021225	GAR1	51	90.000	Macaca_mulatta
ENSIPUG00000003194	gar1	52	90.000	ENSMNEG00000042594	GAR1	51	90.000	Macaca_nemestrina
ENSIPUG00000003194	gar1	52	90.000	ENSMLEG00000002496	GAR1	50	90.000	Mandrillus_leucophaeus
ENSIPUG00000003194	gar1	52	95.455	ENSMZEG00005001281	gar1	74	80.000	Maylandia_zebra
ENSIPUG00000003194	gar1	58	87.705	ENSMAUG00000016788	Gar1	70	96.364	Mesocricetus_auratus
ENSIPUG00000003194	gar1	53	88.393	ENSMICG00000003326	GAR1	51	89.091	Microcebus_murinus
ENSIPUG00000003194	gar1	58	86.066	ENSMOCG00000001340	Gar1	70	96.364	Microtus_ochrogaster
ENSIPUG00000003194	gar1	51	93.458	ENSMMOG00000004156	gar1	53	92.593	Mola_mola
ENSIPUG00000003194	gar1	51	92.523	ENSMALG00000009672	gar1	50	91.667	Monopterus_albus
ENSIPUG00000003194	gar1	58	86.885	MGP_CAROLIEiJ_G0025627	Gar1	70	96.364	Mus_caroli
ENSIPUG00000003194	gar1	59	85.600	ENSMUSG00000028010	Gar1	70	96.364	Mus_musculus
ENSIPUG00000003194	gar1	59	85.600	MGP_PahariEiJ_G0027076	Gar1	70	96.364	Mus_pahari
ENSIPUG00000003194	gar1	59	85.600	MGP_SPRETEiJ_G0026580	Gar1	70	96.364	Mus_spretus
ENSIPUG00000003194	gar1	63	84.962	ENSMPUG00000008615	GAR1	53	90.000	Mustela_putorius_furo
ENSIPUG00000003194	gar1	52	90.000	ENSNGAG00000008268	Gar1	71	94.545	Nannospalax_galili
ENSIPUG00000003194	gar1	61	70.543	ENSNLEG00000034282	-	56	74.545	Nomascus_leucogenys
ENSIPUG00000003194	gar1	52	90.000	ENSNLEG00000016578	GAR1	51	90.000	Nomascus_leucogenys
ENSIPUG00000003194	gar1	51	90.654	ENSODEG00000011083	GAR1	78	82.482	Octodon_degus
ENSIPUG00000003194	gar1	51	96.296	ENSONIG00000001085	gar1	50	96.364	Oreochromis_niloticus
ENSIPUG00000003194	gar1	51	91.589	ENSOCUG00000003901	GAR1	51	90.000	Oryctolagus_cuniculus
ENSIPUG00000003194	gar1	63	87.970	ENSORLG00000020583	gar1	57	90.400	Oryzias_latipes
ENSIPUG00000003194	gar1	63	87.970	ENSORLG00020008602	gar1	57	90.400	Oryzias_latipes_hni
ENSIPUG00000003194	gar1	63	87.970	ENSORLG00015017643	gar1	50	94.545	Oryzias_latipes_hsok
ENSIPUG00000003194	gar1	72	78.289	ENSOGAG00000004693	GAR1	52	90.000	Otolemur_garnettii
ENSIPUG00000003194	gar1	63	85.714	ENSOARG00000004910	GAR1	52	90.000	Ovis_aries
ENSIPUG00000003194	gar1	51	91.589	ENSPPAG00000014081	GAR1	68	84.444	Pan_paniscus
ENSIPUG00000003194	gar1	63	84.962	ENSPPRG00000023697	GAR1	53	90.000	Panthera_pardus
ENSIPUG00000003194	gar1	63	84.962	ENSPTIG00000021565	GAR1	53	90.000	Panthera_tigris_altaica
ENSIPUG00000003194	gar1	70	72.807	ENSPTRG00000049340	-	51	73.832	Pan_troglodytes
ENSIPUG00000003194	gar1	52	90.000	ENSPTRG00000016364	GAR1	68	84.444	Pan_troglodytes
ENSIPUG00000003194	gar1	52	90.000	ENSPANG00000000639	GAR1	62	83.704	Papio_anubis
ENSIPUG00000003194	gar1	51	79.630	ENSPANG00000033062	-	56	72.993	Papio_anubis
ENSIPUG00000003194	gar1	56	89.831	ENSPSIG00000002970	GAR1	50	90.000	Pelodiscus_sinensis
ENSIPUG00000003194	gar1	72	81.579	ENSPEMG00000015838	Gar1	70	96.364	Peromyscus_maniculatus_bairdii
ENSIPUG00000003194	gar1	51	93.519	ENSPFOG00000024155	gar1	52	93.636	Poecilia_formosa
ENSIPUG00000003194	gar1	51	93.519	ENSPLAG00000015056	gar1	52	93.636	Poecilia_latipinna
ENSIPUG00000003194	gar1	51	93.519	ENSPMEG00000009320	gar1	53	93.636	Poecilia_mexicana
ENSIPUG00000003194	gar1	51	91.589	ENSPPYG00000014996	GAR1	62	84.444	Pongo_abelii
ENSIPUG00000003194	gar1	51	80.374	ENSPCAG00000015897	GAR1	68	70.395	Procavia_capensis
ENSIPUG00000003194	gar1	51	89.720	ENSPCOG00000027049	GAR1	69	84.444	Propithecus_coquereli
ENSIPUG00000003194	gar1	52	95.455	ENSPNYG00000020926	gar1	65	83.226	Pundamilia_nyererei
ENSIPUG00000003194	gar1	52	92.727	ENSPNAG00000019686	gar1	68	79.167	Pygocentrus_nattereri
ENSIPUG00000003194	gar1	51	93.519	ENSRNOG00000061146	Gar1	64	91.818	Rattus_norvegicus
ENSIPUG00000003194	gar1	51	91.589	ENSRBIG00000019547	GAR1	56	90.000	Rhinopithecus_bieti
ENSIPUG00000003194	gar1	74	58.599	ENSRBIG00000042411	-	53	73.636	Rhinopithecus_bieti
ENSIPUG00000003194	gar1	68	65.278	ENSRROG00000044348	-	53	73.636	Rhinopithecus_roxellana
ENSIPUG00000003194	gar1	52	90.000	ENSRROG00000028454	GAR1	56	90.000	Rhinopithecus_roxellana
ENSIPUG00000003194	gar1	62	84.733	ENSSBOG00000024785	GAR1	51	90.000	Saimiri_boliviensis_boliviensis
ENSIPUG00000003194	gar1	51	94.444	ENSSMAG00000009976	gar1	50	94.545	Scophthalmus_maximus
ENSIPUG00000003194	gar1	75	83.648	ENSSLDG00000023264	gar1	52	97.273	Seriola_lalandi_dorsalis
ENSIPUG00000003194	gar1	62	84.733	ENSSPUG00000008707	GAR1	61	90.909	Sphenodon_punctatus
ENSIPUG00000003194	gar1	51	91.589	ENSSSCG00000009137	GAR1	54	90.000	Sus_scrofa
ENSIPUG00000003194	gar1	51	92.593	ENSTRUG00000020580	gar1	53	92.727	Takifugu_rubripes
ENSIPUG00000003194	gar1	50	95.238	ENSTNIG00000013023	gar1	63	95.455	Tetraodon_nigroviridis
ENSIPUG00000003194	gar1	63	84.962	ENSUMAG00000000776	GAR1	53	90.000	Ursus_maritimus
ENSIPUG00000003194	gar1	51	91.589	ENSVVUG00000017612	GAR1	57	90.000	Vulpes_vulpes