EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003199 (Gene tree)
Gene ID: 108268955
Gene Symbol: rab13
Alias: cb764|hm:zeh0455
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 12142 bases
Position: chr1:7637286-7649427
Accession: 108268955
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004565	MMR_HSR1	PF01926.23	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004773	-	2751	XM_017474347	ENSIPUP00000004565	201 (aa)	XP_017329836	W5UKR5

Gene Model

Click here to download ENSIPUG00000003199's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003199's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003199	rab13	99	49.751	ENSIPUG00000008650	rab1a	99	49.751
ENSIPUG00000003199	rab13	80	37.037	ENSIPUG00000022502	hrasb	85	37.037
ENSIPUG00000003199	rab13	80	37.423	ENSIPUG00000000962	MRAS	78	37.423
ENSIPUG00000003199	rab13	95	39.175	ENSIPUG00000020082	rab5c	91	39.175
ENSIPUG00000003199	rab13	79	48.428	ENSIPUG00000025100	rab11b	73	48.428
ENSIPUG00000003199	rab13	85	52.353	ENSIPUG00000011489	Rab35	84	52.353
ENSIPUG00000003199	rab13	88	35.714	ENSIPUG00000016494	rab23	90	35.567
ENSIPUG00000003199	rab13	80	36.810	ENSIPUG00000013954	rasm	78	36.810
ENSIPUG00000003199	rab13	98	42.347	ENSIPUG00000007539	rab2a	92	42.347
ENSIPUG00000003199	rab13	88	35.912	ENSIPUG00000006053	hras	94	36.111
ENSIPUG00000003199	rab13	83	47.590	ENSIPUG00000021401	Rab11a	77	47.590
ENSIPUG00000003199	rab13	79	44.937	ENSIPUG00000019382	rab41	80	44.737
ENSIPUG00000003199	rab13	99	49.010	ENSIPUG00000020226	RAB15	99	49.010
ENSIPUG00000003199	rab13	97	40.000	ENSIPUG00000007415	rab14	97	40.000
ENSIPUG00000003199	rab13	64	34.884	ENSIPUG00000000432	RAB20	65	32.121
ENSIPUG00000003199	rab13	85	39.080	ENSIPUG00000017200	-	84	39.080
ENSIPUG00000003199	rab13	95	40.299	ENSIPUG00000022394	zgc:101559	86	40.299
ENSIPUG00000003199	rab13	99	50.495	ENSIPUG00000017890	Rab1A	99	50.495
ENSIPUG00000003199	rab13	68	31.884	ENSIPUG00000015451	arl3	75	31.884
ENSIPUG00000003199	rab13	78	41.875	ENSIPUG00000017447	rab34a	62	41.875
ENSIPUG00000003199	rab13	97	31.841	ENSIPUG00000005254	RERG	95	31.841
ENSIPUG00000003199	rab13	83	38.323	ENSIPUG00000018050	RAB31	86	38.323
ENSIPUG00000003199	rab13	82	36.970	ENSIPUG00000016561	rab9b	75	36.970
ENSIPUG00000003199	rab13	81	42.690	ENSIPUG00000017684	rab33b	73	42.690
ENSIPUG00000003199	rab13	94	34.536	ENSIPUG00000006702	rras	95	34.536
ENSIPUG00000003199	rab13	99	35.468	ENSIPUG00000007246	rab7a	99	35.468
ENSIPUG00000003199	rab13	80	48.750	ENSIPUG00000006091	RAB11A	74	48.750
ENSIPUG00000003199	rab13	96	34.536	ENSIPUG00000004259	kras	98	33.505
ENSIPUG00000003199	rab13	76	35.294	ENSIPUG00000024568	rheb	82	35.294
ENSIPUG00000003199	rab13	95	37.949	ENSIPUG00000010794	rab22a	96	37.949
ENSIPUG00000003199	rab13	94	41.579	ENSIPUG00000021740	rab6a	91	41.579
ENSIPUG00000003199	rab13	94	30.457	ENSIPUG00000021888	-	93	30.457
ENSIPUG00000003199	rab13	68	31.884	ENSIPUG00000008227	arl3	72	31.884
ENSIPUG00000003199	rab13	99	50.746	ENSIPUG00000020508	rab1ab	99	50.746
ENSIPUG00000003199	rab13	79	45.570	ENSIPUG00000006126	Rab25	75	45.570
ENSIPUG00000003199	rab13	88	55.114	ENSIPUG00000019237	rab15	83	55.114
ENSIPUG00000003199	rab13	78	36.250	ENSIPUG00000024531	rab34	63	36.250
ENSIPUG00000003199	rab13	82	43.713	ENSIPUG00000011376	rab42a	78	43.713
ENSIPUG00000003199	rab13	66	30.827	ENSIPUG00000020344	-	79	30.827
ENSIPUG00000003199	rab13	84	46.471	ENSIPUG00000012509	-	77	46.471
ENSIPUG00000003199	rab13	85	53.529	ENSIPUG00000024622	rab35	84	53.529
ENSIPUG00000003199	rab13	80	32.164	ENSIPUG00000000761	zgc	67	32.164
ENSIPUG00000003199	rab13	97	42.439	ENSIPUG00000019927	rab11bb	94	42.439
ENSIPUG00000003199	rab13	79	44.937	ENSIPUG00000015058	rab6b	76	44.937
ENSIPUG00000003199	rab13	84	44.379	ENSIPUG00000016261	RAB19	76	44.379
ENSIPUG00000003199	rab13	95	41.969	ENSIPUG00000023392	rab5a	89	41.969
ENSIPUG00000003199	rab13	80	31.515	ENSIPUG00000015086	dnajc27	59	31.677
ENSIPUG00000003199	rab13	81	46.626	ENSIPUG00000010859	rab18b	79	46.626
ENSIPUG00000003199	rab13	96	37.245	ENSIPUG00000022445	RAB7A	91	37.245
ENSIPUG00000003199	rab13	67	30.147	ENSIPUG00000003931	arl2	70	30.147
ENSIPUG00000003199	rab13	64	34.884	ENSIPUG00000018288	RAB20	65	32.121
ENSIPUG00000003199	rab13	85	46.512	ENSIPUG00000024203	rab39ba	81	46.512
ENSIPUG00000003199	rab13	85	50.000	ENSIPUG00000017401	rab12	70	50.000
ENSIPUG00000003199	rab13	95	41.206	ENSIPUG00000014269	rab33a	86	41.206
ENSIPUG00000003199	rab13	72	39.189	ENSIPUG00000009784	-	67	39.189
ENSIPUG00000003199	rab13	96	40.000	ENSIPUG00000012218	RAB25	92	40.000
ENSIPUG00000003199	rab13	78	39.375	ENSIPUG00000022673	rab36	61	39.375
ENSIPUG00000003199	rab13	97	40.000	ENSIPUG00000015525	-	97	40.000
ENSIPUG00000003199	rab13	79	44.937	ENSIPUG00000018098	rab6b	76	44.937
ENSIPUG00000003199	rab13	85	46.512	ENSIPUG00000020833	rab39b	81	46.512
ENSIPUG00000003199	rab13	96	37.186	ENSIPUG00000014035	rab9a	97	37.186
ENSIPUG00000003199	rab13	81	50.000	ENSIPUG00000021010	Rab30	81	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003199	rab13	99	77.000	ENSG00000143545	RAB13	99	77.000	Homo_sapiens
ENSIPUG00000003199	rab13	91	92.308	ENSACIG00000008584	rab13	88	92.308	Amphilophus_citrinellus
ENSIPUG00000003199	rab13	99	77.500	ENSANAG00000030247	-	99	77.500	Aotus_nancymaae
ENSIPUG00000003199	rab13	100	92.079	ENSAMXG00000030712	rab13	100	92.079	Astyanax_mexicanus
ENSIPUG00000003199	rab13	99	76.098	ENSBTAG00000017604	RAB13	99	76.098	Bos_taurus
ENSIPUG00000003199	rab13	80	47.531	WBGene00019317	K02E10.1	74	47.531	Caenorhabditis_elegans
ENSIPUG00000003199	rab13	86	85.549	ENSCJAG00000009933	-	99	76.500	Callithrix_jacchus
ENSIPUG00000003199	rab13	99	76.098	ENSCHIG00000022271	-	99	76.098	Capra_hircus
ENSIPUG00000003199	rab13	99	77.000	ENSCPOG00000011491	-	99	77.000	Cavia_porcellus
ENSIPUG00000003199	rab13	99	77.000	ENSCCAG00000028502	-	99	77.000	Cebus_capucinus
ENSIPUG00000003199	rab13	99	77.000	ENSCATG00000041779	-	99	77.000	Cercocebus_atys
ENSIPUG00000003199	rab13	99	77.000	ENSCLAG00000006603	-	99	77.000	Chinchilla_lanigera
ENSIPUG00000003199	rab13	99	77.000	ENSCANG00000036573	-	99	77.000	Colobus_angolensis_palliatus
ENSIPUG00000003199	rab13	99	76.500	ENSCGRG00001021505	Rab13	99	76.500	Cricetulus_griseus_chok1gshd
ENSIPUG00000003199	rab13	99	76.500	ENSCGRG00000012126	Rab13	99	76.500	Cricetulus_griseus_crigri
ENSIPUG00000003199	rab13	100	91.542	ENSCSEG00000002358	rab13	100	91.542	Cynoglossus_semilaevis
ENSIPUG00000003199	rab13	100	91.542	ENSDARG00000034771	rab13	100	91.542	Danio_rerio
ENSIPUG00000003199	rab13	99	78.500	ENSDORG00000001591	Rab13	99	78.500	Dipodomys_ordii
ENSIPUG00000003199	rab13	99	76.500	ENSEASG00005000683	-	99	76.500	Equus_asinus_asinus
ENSIPUG00000003199	rab13	99	76.500	ENSECAG00000016551	RAB13	99	76.500	Equus_caballus
ENSIPUG00000003199	rab13	100	73.399	ENSEEUG00000001233	-	100	73.399	Erinaceus_europaeus
ENSIPUG00000003199	rab13	100	88.557	ENSELUG00000012801	rab13	100	88.557	Esox_lucius
ENSIPUG00000003199	rab13	99	76.500	ENSFCAG00000045269	-	99	76.500	Felis_catus
ENSIPUG00000003199	rab13	66	88.636	ENSFDAG00000014469	-	100	88.636	Fukomys_damarensis
ENSIPUG00000003199	rab13	100	88.557	ENSFHEG00000021221	rab13	97	93.220	Fundulus_heteroclitus
ENSIPUG00000003199	rab13	100	89.552	ENSGACG00000011925	rab13	99	89.552	Gasterosteus_aculeatus
ENSIPUG00000003199	rab13	89	84.270	ENSGAGG00000000742	-	100	77.114	Gopherus_agassizii
ENSIPUG00000003199	rab13	99	77.000	ENSGGOG00000023693	RAB13	99	77.000	Gorilla_gorilla
ENSIPUG00000003199	rab13	99	76.382	ENSHGLG00000008749	RAB13	99	76.382	Heterocephalus_glaber_female
ENSIPUG00000003199	rab13	99	76.382	ENSHGLG00100013608	RAB13	99	76.382	Heterocephalus_glaber_male
ENSIPUG00000003199	rab13	100	84.577	ENSHCOG00000007440	rab13	98	93.855	Hippocampus_comes
ENSIPUG00000003199	rab13	99	77.073	ENSSTOG00000011222	-	99	77.073	Ictidomys_tridecemlineatus
ENSIPUG00000003199	rab13	99	77.500	ENSJJAG00000010575	Rab13	99	77.500	Jaculus_jaculus
ENSIPUG00000003199	rab13	100	88.060	ENSKMAG00000001908	rab13	100	88.060	Kryptolebias_marmoratus
ENSIPUG00000003199	rab13	100	90.050	ENSLBEG00000026779	rab13	100	90.050	Labrus_bergylta
ENSIPUG00000003199	rab13	88	76.836	ENSLACG00000008103	-	99	76.836	Latimeria_chalumnae
ENSIPUG00000003199	rab13	99	77.000	ENSMFAG00000041018	RAB13	99	77.000	Macaca_fascicularis
ENSIPUG00000003199	rab13	99	77.000	ENSMNEG00000028951	-	99	77.000	Macaca_nemestrina
ENSIPUG00000003199	rab13	99	77.000	ENSMLEG00000042247	-	99	77.000	Mandrillus_leucophaeus
ENSIPUG00000003199	rab13	100	89.552	ENSMAMG00000014602	rab13	100	89.552	Mastacembelus_armatus
ENSIPUG00000003199	rab13	99	77.000	ENSMAUG00000015713	Rab13	99	77.000	Mesocricetus_auratus
ENSIPUG00000003199	rab13	99	77.387	ENSMICG00000010340	-	99	77.387	Microcebus_murinus
ENSIPUG00000003199	rab13	99	77.000	ENSMOCG00000021448	Rab13	99	77.000	Microtus_ochrogaster
ENSIPUG00000003199	rab13	99	76.500	ENSMODG00000017295	-	84	76.500	Monodelphis_domestica
ENSIPUG00000003199	rab13	99	74.396	MGP_CAROLIEiJ_G0025227	Rab13	99	74.396	Mus_caroli
ENSIPUG00000003199	rab13	99	74.879	ENSMUSG00000027935	Rab13	99	74.879	Mus_musculus
ENSIPUG00000003199	rab13	100	74.038	MGP_PahariEiJ_G0026671	Rab13	100	74.038	Mus_pahari
ENSIPUG00000003199	rab13	99	76.382	ENSNGAG00000010309	Rab13	99	76.382	Nannospalax_galili
ENSIPUG00000003199	rab13	100	89.055	ENSNBRG00000004124	rab13	100	89.055	Neolamprologus_brichardi
ENSIPUG00000003199	rab13	99	77.000	ENSNLEG00000028944	-	99	77.000	Nomascus_leucogenys
ENSIPUG00000003199	rab13	99	76.500	ENSMEUG00000009667	-	99	76.500	Notamacropus_eugenii
ENSIPUG00000003199	rab13	99	77.000	ENSODEG00000010443	-	99	77.000	Octodon_degus
ENSIPUG00000003199	rab13	63	88.976	ENSODEG00000012634	-	100	88.976	Octodon_degus
ENSIPUG00000003199	rab13	100	88.614	ENSONIG00000006340	rab13	100	88.614	Oreochromis_niloticus
ENSIPUG00000003199	rab13	86	85.549	ENSOCUG00000006286	-	97	85.549	Oryctolagus_cuniculus
ENSIPUG00000003199	rab13	100	90.050	ENSOMEG00000008210	rab13	100	90.050	Oryzias_melastigma
ENSIPUG00000003199	rab13	99	76.263	ENSOGAG00000016969	-	99	76.263	Otolemur_garnettii
ENSIPUG00000003199	rab13	99	77.000	ENSPPAG00000028435	-	99	77.000	Pan_paniscus
ENSIPUG00000003199	rab13	99	76.500	ENSPPRG00000008865	-	99	76.500	Panthera_pardus
ENSIPUG00000003199	rab13	99	77.000	ENSPTRG00000001370	RAB13	99	77.000	Pan_troglodytes
ENSIPUG00000003199	rab13	99	77.000	ENSPANG00000004479	-	99	77.000	Papio_anubis
ENSIPUG00000003199	rab13	100	88.557	ENSPMGG00000007680	rab13	100	88.557	Periophthalmus_magnuspinnatus
ENSIPUG00000003199	rab13	62	78.788	ENSPEMG00000017353	-	99	78.788	Peromyscus_maniculatus_bairdii
ENSIPUG00000003199	rab13	99	76.500	ENSPCIG00000029350	-	99	76.500	Phascolarctos_cinereus
ENSIPUG00000003199	rab13	88	94.350	ENSPLAG00000005832	RAB13	95	94.350	Poecilia_latipinna
ENSIPUG00000003199	rab13	93	93.011	ENSPREG00000017567	rab13	100	90.050	Poecilia_reticulata
ENSIPUG00000003199	rab13	99	77.000	ENSPPYG00000000790	-	99	77.000	Pongo_abelii
ENSIPUG00000003199	rab13	99	77.889	ENSPCOG00000012189	-	99	77.889	Propithecus_coquereli
ENSIPUG00000003199	rab13	99	76.382	ENSPVAG00000011095	-	99	76.382	Pteropus_vampyrus
ENSIPUG00000003199	rab13	89	95.531	ENSPNAG00000004189	rab13	95	95.531	Pygocentrus_nattereri
ENSIPUG00000003199	rab13	99	74.634	ENSRNOG00000016733	Rab13	99	74.634	Rattus_norvegicus
ENSIPUG00000003199	rab13	99	77.000	ENSRBIG00000008552	-	99	77.000	Rhinopithecus_bieti
ENSIPUG00000003199	rab13	99	77.000	ENSRROG00000036885	-	99	77.000	Rhinopithecus_roxellana
ENSIPUG00000003199	rab13	99	77.387	ENSSBOG00000020342	-	99	77.387	Saimiri_boliviensis_boliviensis
ENSIPUG00000003199	rab13	99	77.000	ENSSHAG00000011866	-	99	77.000	Sarcophilus_harrisii
ENSIPUG00000003199	rab13	99	76.500	ENSSSCG00000006564	-	99	76.500	Sus_scrofa
ENSIPUG00000003199	rab13	100	89.552	ENSTRUG00000024177	rab13	100	89.552	Takifugu_rubripes
ENSIPUG00000003199	rab13	99	78.500	ENSTBEG00000012734	-	99	78.500	Tupaia_belangeri
ENSIPUG00000003199	rab13	99	76.500	ENSTTRG00000011183	-	99	76.500	Tursiops_truncatus
ENSIPUG00000003199	rab13	68	79.137	ENSXETG00000020729	rab13	100	70.000	Xenopus_tropicalis
ENSIPUG00000003199	rab13	88	93.220	ENSXCOG00000019533	rab13	95	93.220	Xiphophorus_couchianus