EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003271 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 31194 bases
Position: chr7:20182092-20213285
Accession: 108267686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004711	ResIII	PF04851.15	1.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004924	-	5064	XM_017472009	ENSIPUP00000004711	1687 (aa)	XP_017327498	-

Gene Model

Click here to download ENSIPUG00000003271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003271	chd3	94	71.588	ENSIPUG00000005446	chd5	86	85.350
ENSIPUG00000003271	chd3	89	80.255	ENSIPUG00000005694	chd4	81	80.255

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003271	chd3	96	80.919	ENSG00000170004	CHD3	86	78.807	Homo_sapiens
ENSIPUG00000003271	chd3	93	84.288	ENSAPOG00000005614	chd3	98	83.303	Acanthochromis_polyacanthus
ENSIPUG00000003271	chd3	71	86.340	ENSAMEG00000003025	-	89	85.479	Ailuropoda_melanoleuca
ENSIPUG00000003271	chd3	93	84.611	ENSACIG00000019671	chd3	100	84.548	Amphilophus_citrinellus
ENSIPUG00000003271	chd3	93	86.790	ENSAOCG00000023784	chd3	99	84.978	Amphiprion_ocellaris
ENSIPUG00000003271	chd3	93	86.719	ENSAPEG00000006341	chd3	88	85.854	Amphiprion_percula
ENSIPUG00000003271	chd3	89	93.671	ENSATEG00000000848	chd3	93	93.671	Anabas_testudineus
ENSIPUG00000003271	chd3	94	80.209	ENSACAG00000004276	CHD3	80	81.027	Anolis_carolinensis
ENSIPUG00000003271	chd3	96	80.000	ENSANAG00000034323	CHD3	88	80.283	Aotus_nancymaae
ENSIPUG00000003271	chd3	96	80.351	ENSACLG00000009222	chd3	93	80.456	Astatotilapia_calliptera
ENSIPUG00000003271	chd3	94	80.265	ENSBTAG00000014377	CHD3	84	80.865	Bos_taurus
ENSIPUG00000003271	chd3	96	80.848	ENSCJAG00000014766	CHD3	84	80.424	Callithrix_jacchus
ENSIPUG00000003271	chd3	96	79.709	ENSCAFG00000016859	CHD3	83	80.652	Canis_familiaris
ENSIPUG00000003271	chd3	96	79.847	ENSCAFG00020007422	CHD3	90	80.797	Canis_lupus_dingo
ENSIPUG00000003271	chd3	96	80.111	ENSCHIG00000016737	CHD3	84	80.495	Capra_hircus
ENSIPUG00000003271	chd3	96	78.495	ENSTSYG00000035658	CHD3	91	76.446	Carlito_syrichta
ENSIPUG00000003271	chd3	94	76.039	ENSCAPG00000014864	CHD3	82	76.466	Cavia_aperea
ENSIPUG00000003271	chd3	94	79.363	ENSCPOG00000022653	CHD3	83	79.859	Cavia_porcellus
ENSIPUG00000003271	chd3	96	80.848	ENSCCAG00000034792	CHD3	83	80.424	Cebus_capucinus
ENSIPUG00000003271	chd3	96	80.848	ENSCATG00000041717	CHD3	84	80.424	Cercocebus_atys
ENSIPUG00000003271	chd3	96	79.571	ENSCLAG00000010523	CHD3	86	80.510	Chinchilla_lanigera
ENSIPUG00000003271	chd3	96	81.077	ENSCSAG00000011122	CHD3	84	80.652	Chlorocebus_sabaeus
ENSIPUG00000003271	chd3	93	78.799	ENSCPBG00000011966	CHD3	88	92.617	Chrysemys_picta_bellii
ENSIPUG00000003271	chd3	96	80.848	ENSCANG00000037641	CHD3	90	77.095	Colobus_angolensis_palliatus
ENSIPUG00000003271	chd3	96	79.100	ENSCGRG00001011306	Chd3	91	73.270	Cricetulus_griseus_chok1gshd
ENSIPUG00000003271	chd3	88	76.471	ENSCGRG00000007878	Chd3	89	69.511	Cricetulus_griseus_crigri
ENSIPUG00000003271	chd3	93	83.170	ENSCSEG00000004489	chd3	91	83.190	Cynoglossus_semilaevis
ENSIPUG00000003271	chd3	89	93.038	ENSCVAG00000007293	chd3	86	93.038	Cyprinodon_variegatus
ENSIPUG00000003271	chd3	96	85.564	ENSDARG00000021405	chd3	98	84.223	Danio_rerio
ENSIPUG00000003271	chd3	85	87.176	ENSDNOG00000047846	CHD3	75	89.403	Dasypus_novemcinctus
ENSIPUG00000003271	chd3	96	74.481	ENSDORG00000010713	Chd3	85	80.141	Dipodomys_ordii
ENSIPUG00000003271	chd3	96	74.171	ENSETEG00000017733	CHD3	86	74.841	Echinops_telfairi
ENSIPUG00000003271	chd3	72	82.166	ENSEBUG00000008310	chd3	87	76.860	Eptatretus_burgeri
ENSIPUG00000003271	chd3	96	79.778	ENSEASG00005019360	CHD3	90	80.567	Equus_asinus_asinus
ENSIPUG00000003271	chd3	96	79.778	ENSECAG00000010051	CHD3	90	80.567	Equus_caballus
ENSIPUG00000003271	chd3	88	85.870	ENSEEUG00000015205	CHD3	76	85.870	Erinaceus_europaeus
ENSIPUG00000003271	chd3	89	96.732	ENSELUG00000019499	chd3	99	96.732	Esox_lucius
ENSIPUG00000003271	chd3	96	80.365	ENSFCAG00000009629	CHD3	80	80.581	Felis_catus
ENSIPUG00000003271	chd3	96	79.556	ENSFDAG00000008220	CHD3	84	80.198	Fukomys_damarensis
ENSIPUG00000003271	chd3	88	85.656	ENSGMOG00000013599	chd3	83	86.165	Gadus_morhua
ENSIPUG00000003271	chd3	61	83.743	ENSGAFG00000004055	chd3	92	83.932	Gambusia_affinis
ENSIPUG00000003271	chd3	95	78.127	ENSGACG00000019275	chd3	87	77.890	Gasterosteus_aculeatus
ENSIPUG00000003271	chd3	83	76.536	ENSGAGG00000013164	CHD3	99	77.016	Gopherus_agassizii
ENSIPUG00000003271	chd3	96	80.848	ENSGGOG00000013496	CHD3	92	75.322	Gorilla_gorilla
ENSIPUG00000003271	chd3	96	74.437	ENSHGLG00000012017	CHD3	83	80.071	Heterocephalus_glaber_female
ENSIPUG00000003271	chd3	84	68.290	ENSHGLG00100013902	CHD3	82	87.938	Heterocephalus_glaber_male
ENSIPUG00000003271	chd3	93	82.474	ENSHCOG00000010170	chd3	80	92.357	Hippocampus_comes
ENSIPUG00000003271	chd3	96	74.845	ENSSTOG00000025907	CHD3	91	74.366	Ictidomys_tridecemlineatus
ENSIPUG00000003271	chd3	96	79.501	ENSJJAG00000017633	Chd3	91	74.099	Jaculus_jaculus
ENSIPUG00000003271	chd3	96	79.559	ENSKMAG00000019292	chd3	93	80.269	Kryptolebias_marmoratus
ENSIPUG00000003271	chd3	93	80.270	ENSLBEG00000028485	chd3	85	80.465	Labrus_bergylta
ENSIPUG00000003271	chd3	91	76.314	ENSLACG00000008031	CHD3	92	69.760	Latimeria_chalumnae
ENSIPUG00000003271	chd3	96	87.159	ENSLOCG00000013965	chd3	88	84.903	Lepisosteus_oculatus
ENSIPUG00000003271	chd3	93	78.177	ENSLAFG00000000572	CHD3	82	87.898	Loxodonta_africana
ENSIPUG00000003271	chd3	96	80.777	ENSMFAG00000020113	CHD3	90	78.282	Macaca_fascicularis
ENSIPUG00000003271	chd3	96	77.668	ENSMMUG00000022221	CHD3	84	78.758	Macaca_mulatta
ENSIPUG00000003271	chd3	96	80.848	ENSMNEG00000001728	CHD3	90	79.915	Macaca_nemestrina
ENSIPUG00000003271	chd3	96	80.848	ENSMLEG00000032249	CHD3	84	80.424	Mandrillus_leucophaeus
ENSIPUG00000003271	chd3	93	82.635	ENSMAMG00000000564	chd3	93	93.711	Mastacembelus_armatus
ENSIPUG00000003271	chd3	96	78.734	ENSMAUG00000013873	Chd3	92	76.524	Mesocricetus_auratus
ENSIPUG00000003271	chd3	96	79.848	ENSMICG00000008741	CHD3	81	80.565	Microcebus_murinus
ENSIPUG00000003271	chd3	96	78.596	ENSMOCG00000004848	Chd3	91	73.131	Microtus_ochrogaster
ENSIPUG00000003271	chd3	95	83.427	ENSMMOG00000012699	chd3	84	94.268	Mola_mola
ENSIPUG00000003271	chd3	96	74.436	ENSMODG00000007509	CHD3	98	73.592	Monodelphis_domestica
ENSIPUG00000003271	chd3	96	79.196	MGP_CAROLIEiJ_G0016564	Chd3	94	73.363	Mus_caroli
ENSIPUG00000003271	chd3	94	78.922	ENSMUSG00000018474	Chd3	93	73.239	Mus_musculus
ENSIPUG00000003271	chd3	94	79.294	MGP_PahariEiJ_G0017695	Chd3	94	73.521	Mus_pahari
ENSIPUG00000003271	chd3	94	78.922	MGP_SPRETEiJ_G0017400	Chd3	94	73.239	Mus_spretus
ENSIPUG00000003271	chd3	88	81.126	ENSMPUG00000008861	CHD3	89	82.179	Mustela_putorius_furo
ENSIPUG00000003271	chd3	96	78.788	ENSMLUG00000014643	-	83	80.283	Myotis_lucifugus
ENSIPUG00000003271	chd3	94	79.363	ENSNGAG00000000773	Chd3	83	80.141	Nannospalax_galili
ENSIPUG00000003271	chd3	93	85.139	ENSNBRG00000000636	chd3	97	85.139	Neolamprologus_brichardi
ENSIPUG00000003271	chd3	96	73.741	ENSNLEG00000009770	CHD3	87	78.657	Nomascus_leucogenys
ENSIPUG00000003271	chd3	86	80.303	ENSMEUG00000005852	CHD3	77	80.303	Notamacropus_eugenii
ENSIPUG00000003271	chd3	94	79.071	ENSOPRG00000011069	CHD3	89	79.716	Ochotona_princeps
ENSIPUG00000003271	chd3	93	80.365	ENSODEG00000017785	CHD3	83	80.212	Octodon_degus
ENSIPUG00000003271	chd3	95	83.753	ENSONIG00000009292	chd3	89	84.247	Oreochromis_niloticus
ENSIPUG00000003271	chd3	94	78.231	ENSOCUG00000029299	CHD3	85	78.906	Oryctolagus_cuniculus
ENSIPUG00000003271	chd3	80	85.735	ENSORLG00000007107	chd3	83	85.516	Oryzias_latipes
ENSIPUG00000003271	chd3	59	84.538	ENSORLG00020008387	chd3	87	84.080	Oryzias_latipes_hni
ENSIPUG00000003271	chd3	90	91.975	ENSOMEG00000013691	chd3	99	82.342	Oryzias_melastigma
ENSIPUG00000003271	chd3	93	80.919	ENSOGAG00000003216	CHD3	84	80.353	Otolemur_garnettii
ENSIPUG00000003271	chd3	96	79.634	ENSOARG00000017855	CHD3	83	80.014	Ovis_aries
ENSIPUG00000003271	chd3	96	78.720	ENSPPAG00000032886	CHD3	92	75.390	Pan_paniscus
ENSIPUG00000003271	chd3	96	80.435	ENSPPRG00000000626	CHD3	90	73.815	Panthera_pardus
ENSIPUG00000003271	chd3	96	80.919	ENSPTRG00000008714	CHD3	92	75.593	Pan_troglodytes
ENSIPUG00000003271	chd3	96	80.848	ENSPANG00000023938	CHD3	90	78.353	Papio_anubis
ENSIPUG00000003271	chd3	95	89.396	ENSPKIG00000006305	chd3	92	82.397	Paramormyrops_kingsleyae
ENSIPUG00000003271	chd3	62	83.429	ENSPSIG00000010177	CHD3	93	83.142	Pelodiscus_sinensis
ENSIPUG00000003271	chd3	94	79.239	ENSPEMG00000014262	Chd3	84	79.802	Peromyscus_maniculatus_bairdii
ENSIPUG00000003271	chd3	90	91.216	ENSPCIG00000005442	CHD3	85	91.216	Phascolarctos_cinereus
ENSIPUG00000003271	chd3	96	85.663	ENSPFOG00000012464	chd3	80	84.466	Poecilia_formosa
ENSIPUG00000003271	chd3	93	79.892	ENSPLAG00000002887	chd3	89	79.794	Poecilia_latipinna
ENSIPUG00000003271	chd3	59	83.669	ENSPMEG00000016725	chd3	84	83.468	Poecilia_mexicana
ENSIPUG00000003271	chd3	97	81.156	ENSPREG00000011044	chd3	92	81.243	Poecilia_reticulata
ENSIPUG00000003271	chd3	96	77.723	ENSPPYG00000007940	CHD3	86	75.635	Pongo_abelii
ENSIPUG00000003271	chd3	92	74.962	ENSPCAG00000004350	CHD3	81	88.159	Procavia_capensis
ENSIPUG00000003271	chd3	96	80.989	ENSPCOG00000020952	CHD3	85	78.738	Propithecus_coquereli
ENSIPUG00000003271	chd3	79	78.656	ENSPVAG00000016344	CHD3	71	86.161	Pteropus_vampyrus
ENSIPUG00000003271	chd3	96	93.291	ENSPNAG00000020393	chd3	99	87.266	Pygocentrus_nattereri
ENSIPUG00000003271	chd3	94	79.236	ENSRNOG00000009722	Chd3	90	79.802	Rattus_norvegicus
ENSIPUG00000003271	chd3	96	77.732	ENSRBIG00000033562	CHD3	90	77.723	Rhinopithecus_bieti
ENSIPUG00000003271	chd3	96	79.050	ENSRROG00000029554	CHD3	90	78.631	Rhinopithecus_roxellana
ENSIPUG00000003271	chd3	96	80.919	ENSSBOG00000020719	CHD3	90	79.986	Saimiri_boliviensis_boliviensis
ENSIPUG00000003271	chd3	96	74.704	ENSSHAG00000014412	CHD3	92	74.082	Sarcophilus_harrisii
ENSIPUG00000003271	chd3	93	82.751	ENSSFOG00015023123	chd3	97	82.897	Scleropages_formosus
ENSIPUG00000003271	chd3	92	85.188	ENSSMAG00000006451	chd3	99	81.435	Scophthalmus_maximus
ENSIPUG00000003271	chd3	57	85.300	ENSSDUG00000005792	chd3	88	84.917	Seriola_dumerili
ENSIPUG00000003271	chd3	93	87.074	ENSSPAG00000013694	chd3	99	83.467	Stegastes_partitus
ENSIPUG00000003271	chd3	92	87.898	ENSSSCG00000021363	CHD3	91	87.421	Sus_scrofa
ENSIPUG00000003271	chd3	82	83.508	ENSTRUG00000014990	chd3	84	85.043	Takifugu_rubripes
ENSIPUG00000003271	chd3	96	78.244	ENSTNIG00000012998	chd3	91	77.507	Tetraodon_nigroviridis
ENSIPUG00000003271	chd3	66	89.952	ENSTBEG00000011454	-	62	89.952	Tupaia_belangeri
ENSIPUG00000003271	chd3	92	84.830	ENSTTRG00000010295	CHD3	78	84.948	Tursiops_truncatus
ENSIPUG00000003271	chd3	96	78.532	ENSUAMG00000005475	CHD3	90	79.223	Ursus_americanus
ENSIPUG00000003271	chd3	56	90.402	ENSVPAG00000010794	-	54	90.402	Vicugna_pacos
ENSIPUG00000003271	chd3	96	79.709	ENSVVUG00000028011	CHD3	87	80.652	Vulpes_vulpes
ENSIPUG00000003271	chd3	94	71.969	ENSXETG00000012991	chd3	81	72.441	Xenopus_tropicalis
ENSIPUG00000003271	chd3	61	82.071	ENSXCOG00000000809	chd3	85	88.664	Xiphophorus_couchianus
ENSIPUG00000003271	chd3	93	83.157	ENSXMAG00000016035	chd3	99	83.219	Xiphophorus_maculatus