EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003290 (Gene tree)
Gene ID: 108280557
Gene Symbol: riok1
Alias: fb99f04|wu:fb99f04|zgc:56195
Full Name: RIO kinase 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 10936 bases
Position: chr20:2517684-2528619
Accession: 108280557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004735	RIO1	PF01163.22	3.9e-76	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000004948	-	5280	XM_017495659	ENSIPUP00000004735	561 (aa)	XP_017351148	A0A2D0T8E2

Gene Model

Click here to download ENSIPUG00000003290's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003290's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003290	riok1	54	44.481	ENSIPUG00000001406	Riok3	60	44.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003290	riok1	100	69.338	ENSG00000124784	RIOK1	99	70.035	Homo_sapiens
ENSIPUG00000003290	riok1	56	70.312	ENSAPOG00000015632	riok1	99	69.159	Acanthochromis_polyacanthus
ENSIPUG00000003290	riok1	100	69.284	ENSAMEG00000017367	RIOK1	99	68.947	Ailuropoda_melanoleuca
ENSIPUG00000003290	riok1	87	75.000	ENSACIG00000003735	riok1	88	75.051	Amphilophus_citrinellus
ENSIPUG00000003290	riok1	100	70.265	ENSAOCG00000011818	riok1	100	68.375	Amphiprion_ocellaris
ENSIPUG00000003290	riok1	100	70.265	ENSAPEG00000001345	riok1	100	68.375	Amphiprion_percula
ENSIPUG00000003290	riok1	81	76.906	ENSATEG00000006594	riok1	99	76.906	Anabas_testudineus
ENSIPUG00000003290	riok1	83	77.167	ENSAPLG00000004196	RIOK1	100	76.744	Anas_platyrhynchos
ENSIPUG00000003290	riok1	100	68.870	ENSACAG00000000695	RIOK1	99	68.476	Anolis_carolinensis
ENSIPUG00000003290	riok1	100	61.313	ENSANAG00000023777	RIOK1	99	59.686	Aotus_nancymaae
ENSIPUG00000003290	riok1	99	70.351	ENSACLG00000015799	riok1	99	69.298	Astatotilapia_calliptera
ENSIPUG00000003290	riok1	100	80.769	ENSAMXG00000015286	riok1	99	80.245	Astyanax_mexicanus
ENSIPUG00000003290	riok1	100	68.056	ENSBTAG00000013821	RIOK1	99	68.056	Bos_taurus
ENSIPUG00000003290	riok1	77	50.562	WBGene00019698	riok-1	86	47.648	Caenorhabditis_elegans
ENSIPUG00000003290	riok1	100	65.997	ENSCJAG00000042960	RIOK1	85	76.715	Callithrix_jacchus
ENSIPUG00000003290	riok1	86	75.000	ENSCAFG00000009563	RIOK1	99	68.586	Canis_familiaris
ENSIPUG00000003290	riok1	83	72.176	ENSCAFG00020013233	RIOK1	86	72.041	Canis_lupus_dingo
ENSIPUG00000003290	riok1	100	67.931	ENSCHIG00000001534	RIOK1	99	68.246	Capra_hircus
ENSIPUG00000003290	riok1	66	73.740	ENSTSYG00000011368	RIOK1	100	74.618	Carlito_syrichta
ENSIPUG00000003290	riok1	79	74.725	ENSCAPG00000008489	RIOK1	100	74.518	Cavia_aperea
ENSIPUG00000003290	riok1	98	68.449	ENSCPOG00000009882	RIOK1	99	68.412	Cavia_porcellus
ENSIPUG00000003290	riok1	100	68.631	ENSCCAG00000024061	RIOK1	99	69.634	Cebus_capucinus
ENSIPUG00000003290	riok1	100	69.377	ENSCATG00000001548	RIOK1	99	70.157	Cercocebus_atys
ENSIPUG00000003290	riok1	100	69.164	ENSCLAG00000003522	RIOK1	99	69.164	Chinchilla_lanigera
ENSIPUG00000003290	riok1	80	74.187	ENSCSAG00000007396	RIOK1	89	72.008	Chlorocebus_sabaeus
ENSIPUG00000003290	riok1	86	72.393	ENSCPBG00000008685	RIOK1	82	72.393	Chrysemys_picta_bellii
ENSIPUG00000003290	riok1	100	69.338	ENSCANG00000032919	RIOK1	99	69.808	Colobus_angolensis_palliatus
ENSIPUG00000003290	riok1	91	70.888	ENSCGRG00001018868	Riok1	99	67.193	Cricetulus_griseus_chok1gshd
ENSIPUG00000003290	riok1	91	70.888	ENSCGRG00000008015	Riok1	99	67.193	Cricetulus_griseus_crigri
ENSIPUG00000003290	riok1	88	51.786	ENSCSEG00000015014	riok1	87	52.727	Cynoglossus_semilaevis
ENSIPUG00000003290	riok1	57	68.323	ENSCVAG00000011291	riok1	99	68.323	Cyprinodon_variegatus
ENSIPUG00000003290	riok1	100	77.289	ENSDARG00000016399	riok1	100	77.993	Danio_rerio
ENSIPUG00000003290	riok1	100	68.750	ENSDNOG00000015813	RIOK1	99	68.467	Dasypus_novemcinctus
ENSIPUG00000003290	riok1	100	70.753	ENSDORG00000008530	Riok1	99	70.351	Dipodomys_ordii
ENSIPUG00000003290	riok1	80	54.077	FBgn0036187	RIOK1	79	52.966	Drosophila_melanogaster
ENSIPUG00000003290	riok1	100	68.596	ENSETEG00000020273	RIOK1	99	68.421	Echinops_telfairi
ENSIPUG00000003290	riok1	99	60.839	ENSEBUG00000013672	riok1	98	61.538	Eptatretus_burgeri
ENSIPUG00000003290	riok1	95	67.339	ENSEASG00005012032	RIOK1	85	71.053	Equus_asinus_asinus
ENSIPUG00000003290	riok1	100	68.804	ENSECAG00000009007	RIOK1	99	67.944	Equus_caballus
ENSIPUG00000003290	riok1	73	64.692	ENSEEUG00000007123	RIOK1	90	67.424	Erinaceus_europaeus
ENSIPUG00000003290	riok1	100	73.982	ENSELUG00000017029	riok1	99	73.890	Esox_lucius
ENSIPUG00000003290	riok1	84	75.519	ENSFCAG00000027290	RIOK1	99	68.348	Felis_catus
ENSIPUG00000003290	riok1	100	71.529	ENSFALG00000013244	RIOK1	99	69.808	Ficedula_albicollis
ENSIPUG00000003290	riok1	100	67.422	ENSFDAG00000019139	RIOK1	99	67.820	Fukomys_damarensis
ENSIPUG00000003290	riok1	69	80.818	ENSFHEG00000021419	riok1	87	80.407	Fundulus_heteroclitus
ENSIPUG00000003290	riok1	73	77.751	ENSGMOG00000018668	riok1	95	77.861	Gadus_morhua
ENSIPUG00000003290	riok1	57	71.865	ENSGALG00000012795	RIOK1	100	71.865	Gallus_gallus
ENSIPUG00000003290	riok1	83	64.957	ENSGAFG00000004091	riok1	79	64.316	Gambusia_affinis
ENSIPUG00000003290	riok1	97	69.470	ENSGACG00000002496	riok1	94	76.220	Gasterosteus_aculeatus
ENSIPUG00000003290	riok1	82	71.459	ENSGAGG00000002262	RIOK1	96	71.429	Gopherus_agassizii
ENSIPUG00000003290	riok1	100	62.390	ENSGGOG00000011037	RIOK1	99	63.093	Gorilla_gorilla
ENSIPUG00000003290	riok1	100	67.888	ENSHGLG00000008699	RIOK1	99	67.888	Heterocephalus_glaber_female
ENSIPUG00000003290	riok1	100	68.063	ENSHGLG00100008188	RIOK1	99	68.134	Heterocephalus_glaber_male
ENSIPUG00000003290	riok1	88	73.589	ENSHCOG00000013275	riok1	91	72.819	Hippocampus_comes
ENSIPUG00000003290	riok1	100	69.474	ENSSTOG00000009289	RIOK1	99	69.686	Ictidomys_tridecemlineatus
ENSIPUG00000003290	riok1	100	68.870	ENSJJAG00000015152	Riok1	99	68.284	Jaculus_jaculus
ENSIPUG00000003290	riok1	68	77.892	ENSKMAG00000019378	riok1	100	77.892	Kryptolebias_marmoratus
ENSIPUG00000003290	riok1	88	76.008	ENSLBEG00000016650	riok1	87	76.375	Labrus_bergylta
ENSIPUG00000003290	riok1	87	67.470	ENSLACG00000000300	RIOK1	99	61.728	Latimeria_chalumnae
ENSIPUG00000003290	riok1	100	74.476	ENSLOCG00000011728	riok1	99	73.951	Lepisosteus_oculatus
ENSIPUG00000003290	riok1	99	69.894	ENSLAFG00000005504	RIOK1	99	68.815	Loxodonta_africana
ENSIPUG00000003290	riok1	100	69.377	ENSMFAG00000029990	RIOK1	99	70.175	Macaca_fascicularis
ENSIPUG00000003290	riok1	100	69.204	ENSMMUG00000015577	RIOK1	99	70.000	Macaca_mulatta
ENSIPUG00000003290	riok1	100	66.436	ENSMNEG00000034396	RIOK1	97	71.459	Macaca_nemestrina
ENSIPUG00000003290	riok1	84	76.907	ENSMLEG00000026327	RIOK1	99	70.157	Mandrillus_leucophaeus
ENSIPUG00000003290	riok1	99	71.530	ENSMAMG00000019557	riok1	99	71.708	Mastacembelus_armatus
ENSIPUG00000003290	riok1	99	70.877	ENSMZEG00005019482	riok1	99	69.123	Maylandia_zebra
ENSIPUG00000003290	riok1	100	69.136	ENSMGAG00000003816	RIOK1	99	69.596	Meleagris_gallopavo
ENSIPUG00000003290	riok1	94	69.926	ENSMAUG00000012751	Riok1	99	67.361	Mesocricetus_auratus
ENSIPUG00000003290	riok1	100	69.580	ENSMICG00000044301	RIOK1	83	69.930	Microcebus_murinus
ENSIPUG00000003290	riok1	100	67.016	ENSMOCG00000017032	Riok1	99	66.435	Microtus_ochrogaster
ENSIPUG00000003290	riok1	83	67.327	ENSMMOG00000020598	riok1	87	67.723	Mola_mola
ENSIPUG00000003290	riok1	86	75.100	ENSMODG00000009964	RIOK1	99	69.444	Monodelphis_domestica
ENSIPUG00000003290	riok1	83	70.064	ENSMALG00000019982	riok1	89	69.767	Monopterus_albus
ENSIPUG00000003290	riok1	100	68.586	MGP_CAROLIEiJ_G0018439	Riok1	99	67.770	Mus_caroli
ENSIPUG00000003290	riok1	100	68.284	ENSMUSG00000021428	Riok1	99	67.422	Mus_musculus
ENSIPUG00000003290	riok1	100	67.714	MGP_PahariEiJ_G0019507	Riok1	99	66.725	Mus_pahari
ENSIPUG00000003290	riok1	100	68.586	MGP_SPRETEiJ_G0019319	Riok1	99	67.368	Mus_spretus
ENSIPUG00000003290	riok1	100	69.338	ENSMPUG00000000570	RIOK1	99	69.177	Mustela_putorius_furo
ENSIPUG00000003290	riok1	100	69.649	ENSMLUG00000015312	RIOK1	99	69.649	Myotis_lucifugus
ENSIPUG00000003290	riok1	100	69.043	ENSNGAG00000021734	Riok1	99	69.512	Nannospalax_galili
ENSIPUG00000003290	riok1	70	84.051	ENSNBRG00000017489	riok1	76	84.051	Neolamprologus_brichardi
ENSIPUG00000003290	riok1	100	63.240	ENSNLEG00000011621	RIOK1	99	62.544	Nomascus_leucogenys
ENSIPUG00000003290	riok1	73	60.194	ENSMEUG00000006679	-	72	60.261	Notamacropus_eugenii
ENSIPUG00000003290	riok1	65	73.854	ENSOPRG00000009524	RIOK1	100	73.854	Ochotona_princeps
ENSIPUG00000003290	riok1	72	61.042	ENSODEG00000005663	RIOK1	98	61.538	Octodon_degus
ENSIPUG00000003290	riok1	88	76.660	ENSONIG00000014010	riok1	87	77.033	Oreochromis_niloticus
ENSIPUG00000003290	riok1	81	78.448	ENSOANG00000012553	RIOK1	100	78.017	Ornithorhynchus_anatinus
ENSIPUG00000003290	riok1	84	76.082	ENSOCUG00000011824	RIOK1	99	68.596	Oryctolagus_cuniculus
ENSIPUG00000003290	riok1	99	71.099	ENSORLG00000008221	riok1	88	75.506	Oryzias_latipes
ENSIPUG00000003290	riok1	99	69.300	ENSORLG00020013838	riok1	62	73.511	Oryzias_latipes_hni
ENSIPUG00000003290	riok1	99	71.277	ENSORLG00015009817	riok1	88	75.506	Oryzias_latipes_hsok
ENSIPUG00000003290	riok1	99	70.160	ENSOMEG00000002758	riok1	89	69.627	Oryzias_melastigma
ENSIPUG00000003290	riok1	100	64.437	ENSOGAG00000010192	RIOK1	99	64.613	Otolemur_garnettii
ENSIPUG00000003290	riok1	100	69.284	ENSOARG00000017747	RIOK1	99	68.237	Ovis_aries
ENSIPUG00000003290	riok1	100	61.698	ENSPPAG00000016349	RIOK1	100	71.560	Pan_paniscus
ENSIPUG00000003290	riok1	84	75.983	ENSPPRG00000001932	RIOK1	99	68.229	Panthera_pardus
ENSIPUG00000003290	riok1	84	75.983	ENSPTIG00000018545	RIOK1	99	68.229	Panthera_tigris_altaica
ENSIPUG00000003290	riok1	100	69.512	ENSPTRG00000017700	RIOK1	99	70.209	Pan_troglodytes
ENSIPUG00000003290	riok1	100	69.377	ENSPANG00000016522	RIOK1	99	70.157	Papio_anubis
ENSIPUG00000003290	riok1	100	73.890	ENSPKIG00000006442	riok1	100	73.582	Paramormyrops_kingsleyae
ENSIPUG00000003290	riok1	86	77.935	ENSPSIG00000006488	RIOK1	97	71.278	Pelodiscus_sinensis
ENSIPUG00000003290	riok1	69	74.359	ENSPMGG00000017807	riok1	96	70.225	Periophthalmus_magnuspinnatus
ENSIPUG00000003290	riok1	86	74.044	ENSPEMG00000017844	Riok1	99	67.944	Peromyscus_maniculatus_bairdii
ENSIPUG00000003290	riok1	60	79.167	ENSPMAG00000006351	riok1	98	69.928	Petromyzon_marinus
ENSIPUG00000003290	riok1	77	75.571	ENSPCIG00000012653	RIOK1	86	71.984	Phascolarctos_cinereus
ENSIPUG00000003290	riok1	87	70.265	ENSPFOG00000011532	riok1	100	64.903	Poecilia_formosa
ENSIPUG00000003290	riok1	100	65.079	ENSPLAG00000001341	riok1	100	65.432	Poecilia_latipinna
ENSIPUG00000003290	riok1	87	70.265	ENSPMEG00000007710	riok1	100	64.727	Poecilia_mexicana
ENSIPUG00000003290	riok1	87	70.588	ENSPREG00000009237	riok1	100	64.912	Poecilia_reticulata
ENSIPUG00000003290	riok1	100	69.634	ENSPPYG00000016207	RIOK1	99	69.634	Pongo_abelii
ENSIPUG00000003290	riok1	100	59.619	ENSPCAG00000007892	RIOK1	99	59.375	Procavia_capensis
ENSIPUG00000003290	riok1	100	69.110	ENSPVAG00000014091	RIOK1	99	68.947	Pteropus_vampyrus
ENSIPUG00000003290	riok1	57	75.542	ENSPNYG00000004465	riok1	100	74.074	Pundamilia_nyererei
ENSIPUG00000003290	riok1	100	80.885	ENSPNAG00000015435	riok1	99	81.416	Pygocentrus_nattereri
ENSIPUG00000003290	riok1	100	66.782	ENSRNOG00000014049	Riok1	100	74.359	Rattus_norvegicus
ENSIPUG00000003290	riok1	100	69.338	ENSRBIG00000036685	RIOK1	99	69.634	Rhinopithecus_bieti
ENSIPUG00000003290	riok1	100	69.512	ENSRROG00000036611	RIOK1	99	69.808	Rhinopithecus_roxellana
ENSIPUG00000003290	riok1	60	40.108	YOR119C	RIO1	96	36.546	Saccharomyces_cerevisiae
ENSIPUG00000003290	riok1	100	69.406	ENSSBOG00000012588	RIOK1	99	69.406	Saimiri_boliviensis_boliviensis
ENSIPUG00000003290	riok1	72	78.261	ENSSHAG00000003091	RIOK1	92	71.811	Sarcophilus_harrisii
ENSIPUG00000003290	riok1	87	80.285	ENSSFOG00015001035	riok1	99	73.498	Scleropages_formosus
ENSIPUG00000003290	riok1	57	70.219	ENSSDUG00000007291	riok1	100	68.966	Seriola_dumerili
ENSIPUG00000003290	riok1	100	70.848	ENSSLDG00000017657	riok1	99	71.226	Seriola_lalandi_dorsalis
ENSIPUG00000003290	riok1	85	64.050	ENSSPUG00000007624	RIOK1	83	64.213	Sphenodon_punctatus
ENSIPUG00000003290	riok1	100	71.378	ENSSPAG00000022710	riok1	100	68.783	Stegastes_partitus
ENSIPUG00000003290	riok1	100	66.378	ENSSSCG00000001024	RIOK1	99	66.319	Sus_scrofa
ENSIPUG00000003290	riok1	86	76.923	ENSTGUG00000002331	RIOK1	99	70.629	Taeniopygia_guttata
ENSIPUG00000003290	riok1	51	65.636	ENSTRUG00000001575	-	99	65.753	Takifugu_rubripes
ENSIPUG00000003290	riok1	74	65.228	ENSTRUG00000002854	riok1	94	66.842	Takifugu_rubripes
ENSIPUG00000003290	riok1	99	62.679	ENSTNIG00000003078	riok1	98	62.766	Tetraodon_nigroviridis
ENSIPUG00000003290	riok1	100	65.404	ENSTBEG00000016730	RIOK1	99	67.075	Tupaia_belangeri
ENSIPUG00000003290	riok1	68	80.928	ENSTTRG00000017335	RIOK1	81	80.928	Tursiops_truncatus
ENSIPUG00000003290	riok1	94	67.528	ENSUAMG00000003721	RIOK1	87	71.951	Ursus_americanus
ENSIPUG00000003290	riok1	100	69.634	ENSUMAG00000018461	RIOK1	99	69.298	Ursus_maritimus
ENSIPUG00000003290	riok1	60	80.851	ENSVPAG00000010813	-	50	91.667	Vicugna_pacos
ENSIPUG00000003290	riok1	86	75.202	ENSVVUG00000005018	RIOK1	99	68.586	Vulpes_vulpes
ENSIPUG00000003290	riok1	88	70.683	ENSXETG00000020436	riok1	86	71.399	Xenopus_tropicalis
ENSIPUG00000003290	riok1	83	67.234	ENSXCOG00000000245	riok1	100	67.447	Xiphophorus_couchianus
ENSIPUG00000003290	riok1	73	73.723	ENSXMAG00000014572	riok1	80	73.786	Xiphophorus_maculatus