EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003291 (Gene tree)
Gene ID: 108273755
Gene Symbol: HDLBP
Alias: fa07b03|sb:eu532|si:dkey-38p12.2|wu:fa07b03
Full Name: vigilin-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 18946 bases
Position: chr13:2699843-2718788
Accession: 108273755
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	1	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	2	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	3	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	4	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	5	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	6	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	7	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	8	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	9	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	10	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	11	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	12	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	13	14
ENSIPUP00000004805	KH_1	PF00013.29	1.1e-181	14	14
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	1	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	2	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	3	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	4	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	5	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	6	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	7	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	8	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	9	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	10	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	11	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	12	13
ENSIPUP00000004833	KH_1	PF00013.29	4e-172	13	13

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000005050	-	3666	-	ENSIPUP00000004833	1145 (aa)	-	-
ENSIPUT00000005024	-	4019	XM_017483245	ENSIPUP00000004805	1266 (aa)	XP_017338734	W6A3B7

Gene Model

Click here to download ENSIPUG00000003291's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003291's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003291	HDLBP	87	57.216	ENSIPUG00000013177	-	88	59.036
ENSIPUG00000003291	HDLBP	100	70.009	ENSIPUG00000013088	hdlbp	100	69.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003291	HDLBP	100	85.789	ENSAPOG00000006904	hdlbpb	100	85.433	Acanthochromis_polyacanthus
ENSIPUG00000003291	HDLBP	100	82.031	ENSACIG00000016154	hdlbpb	100	81.697	Amphilophus_citrinellus
ENSIPUG00000003291	HDLBP	100	86.051	ENSAOCG00000004083	hdlbpb	100	85.669	Amphiprion_ocellaris
ENSIPUG00000003291	HDLBP	100	85.963	ENSAPEG00000012270	hdlbpb	100	85.591	Amphiprion_percula
ENSIPUG00000003291	HDLBP	100	85.340	ENSATEG00000019877	hdlbpb	100	84.791	Anabas_testudineus
ENSIPUG00000003291	HDLBP	100	79.301	ENSACAG00000003606	-	100	78.910	Anolis_carolinensis
ENSIPUG00000003291	HDLBP	100	85.876	ENSACLG00000006618	hdlbpb	100	85.512	Astatotilapia_calliptera
ENSIPUG00000003291	HDLBP	100	81.481	ENSAMXG00000019946	hdlbpb	100	81.481	Astyanax_mexicanus
ENSIPUG00000003291	HDLBP	100	85.179	ENSCSEG00000000955	hdlbpb	100	84.712	Cynoglossus_semilaevis
ENSIPUG00000003291	HDLBP	100	85.266	ENSCVAG00000005345	hdlbpb	100	84.961	Cyprinodon_variegatus
ENSIPUG00000003291	HDLBP	100	87.860	ENSDARG00000061864	hdlbpb	99	86.719	Danio_rerio
ENSIPUG00000003291	HDLBP	97	68.728	ENSEBUG00000005304	hdlbpb	96	67.692	Eptatretus_burgeri
ENSIPUG00000003291	HDLBP	100	73.920	ENSELUG00000019925	hdlbpb	100	73.998	Esox_lucius
ENSIPUG00000003291	HDLBP	96	34.034	ENSFHEG00000001701	hdlbpb	100	80.536	Fundulus_heteroclitus
ENSIPUG00000003291	HDLBP	100	81.833	ENSGMOG00000004522	hdlbpb	78	81.833	Gadus_morhua
ENSIPUG00000003291	HDLBP	100	85.963	ENSGAFG00000005278	hdlbpb	100	85.354	Gambusia_affinis
ENSIPUG00000003291	HDLBP	100	83.261	ENSGACG00000019361	hdlbpb	100	83.360	Gasterosteus_aculeatus
ENSIPUG00000003291	HDLBP	100	85.702	ENSHBUG00000018434	hdlbpb	100	85.354	Haplochromis_burtoni
ENSIPUG00000003291	HDLBP	100	85.266	ENSKMAG00000016562	hdlbpb	100	84.882	Kryptolebias_marmoratus
ENSIPUG00000003291	HDLBP	100	85.079	ENSLBEG00000027855	hdlbpb	100	84.791	Labrus_bergylta
ENSIPUG00000003291	HDLBP	100	70.916	ENSLACG00000007661	hdlbpb	100	70.916	Latimeria_chalumnae
ENSIPUG00000003291	HDLBP	100	80.268	ENSLOCG00000013909	hdlbpb	100	80.268	Lepisosteus_oculatus
ENSIPUG00000003291	HDLBP	100	84.991	ENSMAMG00000003035	hdlbpb	100	84.791	Mastacembelus_armatus
ENSIPUG00000003291	HDLBP	100	85.876	ENSMZEG00005021465	hdlbpb	100	85.512	Maylandia_zebra
ENSIPUG00000003291	HDLBP	100	84.206	ENSMMOG00000012525	hdlbpb	100	83.833	Mola_mola
ENSIPUG00000003291	HDLBP	100	83.944	ENSMALG00000008938	hdlbpb	100	83.609	Monopterus_albus
ENSIPUG00000003291	HDLBP	100	85.876	ENSNBRG00000002236	hdlbpb	100	85.512	Neolamprologus_brichardi
ENSIPUG00000003291	HDLBP	100	85.789	ENSONIG00000009211	hdlbpb	100	85.276	Oreochromis_niloticus
ENSIPUG00000003291	HDLBP	100	84.817	ENSORLG00000006581	hdlbpb	100	84.543	Oryzias_latipes
ENSIPUG00000003291	HDLBP	100	84.729	ENSORLG00020010012	hdlbpb	100	84.464	Oryzias_latipes_hni
ENSIPUG00000003291	HDLBP	100	84.904	ENSORLG00015006863	hdlbpb	100	84.621	Oryzias_latipes_hsok
ENSIPUG00000003291	HDLBP	100	84.468	ENSOMEG00000011131	hdlbpb	100	84.148	Oryzias_melastigma
ENSIPUG00000003291	HDLBP	100	86.376	ENSPKIG00000005966	hdlbpb	100	86.335	Paramormyrops_kingsleyae
ENSIPUG00000003291	HDLBP	95	88.056	ENSPMGG00000019853	hdlbpb	99	88.056	Periophthalmus_magnuspinnatus
ENSIPUG00000003291	HDLBP	91	65.000	ENSPMAG00000000249	-	99	64.217	Petromyzon_marinus
ENSIPUG00000003291	HDLBP	99	73.326	ENSPMAG00000002131	hdlbpb	100	73.326	Petromyzon_marinus
ENSIPUG00000003291	HDLBP	100	84.927	ENSPFOG00000008755	hdlbpb	100	84.502	Poecilia_formosa
ENSIPUG00000003291	HDLBP	100	85.963	ENSPLAG00000007055	hdlbpb	100	85.433	Poecilia_latipinna
ENSIPUG00000003291	HDLBP	100	85.876	ENSPMEG00000001952	hdlbpb	100	85.354	Poecilia_mexicana
ENSIPUG00000003291	HDLBP	100	85.876	ENSPREG00000012848	hdlbpb	100	85.354	Poecilia_reticulata
ENSIPUG00000003291	HDLBP	100	85.876	ENSPNYG00000022467	hdlbpb	100	85.343	Pundamilia_nyererei
ENSIPUG00000003291	HDLBP	100	92.926	ENSPNAG00000011104	hdlbpb	100	92.654	Pygocentrus_nattereri
ENSIPUG00000003291	HDLBP	100	85.590	ENSSFOG00015023199	hdlbpb	100	85.387	Scleropages_formosus
ENSIPUG00000003291	HDLBP	100	85.702	ENSSMAG00000008790	hdlbpb	100	85.354	Scophthalmus_maximus
ENSIPUG00000003291	HDLBP	100	85.515	ENSSDUG00000020694	hdlbpb	100	85.106	Seriola_dumerili
ENSIPUG00000003291	HDLBP	100	85.515	ENSSLDG00000020807	hdlbpb	100	85.106	Seriola_lalandi_dorsalis
ENSIPUG00000003291	HDLBP	100	80.000	ENSSPUG00000018688	-	100	79.463	Sphenodon_punctatus
ENSIPUG00000003291	HDLBP	100	85.789	ENSSPAG00000016969	hdlbpb	100	85.433	Stegastes_partitus
ENSIPUG00000003291	HDLBP	100	84.394	ENSTRUG00000012888	hdlbpb	99	82.027	Takifugu_rubripes
ENSIPUG00000003291	HDLBP	100	83.751	ENSTNIG00000002555	hdlbpb	100	83.034	Tetraodon_nigroviridis
ENSIPUG00000003291	HDLBP	100	64.960	ENSXCOG00000001797	hdlbpb	100	64.960	Xiphophorus_couchianus
ENSIPUG00000003291	HDLBP	100	85.353	ENSXMAG00000015633	hdlbpb	100	84.882	Xiphophorus_maculatus