EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003439 (Gene tree)
Gene ID: 108262996
Gene Symbol: srsf5a
Alias: fb49e01|im:6906390|sfrs5|sfrs5a|wu:fb49e01|wu:fj09b12
Full Name: serine and arginine rich splicing factor 5
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 4763 bases
Position: chr3:35744747-35749509
Accession: 108262996
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000004952	RRM_5	PF13893.6	2e-06	1	1
ENSIPUP00000004941	RRM_5	PF13893.6	2e-06	1	1
ENSIPUP00000004952	RRM_1	PF00076.22	7.1e-35	1	2
ENSIPUP00000004952	RRM_1	PF00076.22	7.1e-35	2	2
ENSIPUP00000004941	RRM_1	PF00076.22	7.2e-35	1	2
ENSIPUP00000004941	RRM_1	PF00076.22	7.2e-35	2	2
ENSIPUP00000004941	RRM_3	PF08777.11	3.8e-08	1	1
ENSIPUP00000004952	RRM_3	PF08777.11	3.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000005174	-	834	-	ENSIPUP00000004952	277 (aa)	-	-
ENSIPUT00000005162	-	2226	XM_017463361	ENSIPUP00000004941	278 (aa)	XP_017318850	-

Gene Model

Click here to download ENSIPUG00000003439's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003439	srsf5a	64	45.355	ENSIPUG00000017039	srsf1a	68	45.355
ENSIPUG00000003439	srsf5a	69	38.806	ENSIPUG00000005511	srsf9	79	38.889
ENSIPUG00000003439	srsf5a	69	62.500	ENSIPUG00000004776	-	63	60.526
ENSIPUG00000003439	srsf5a	64	42.623	ENSIPUG00000008750	srsf1b	67	42.077

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003439	srsf5a	69	85.263	ENSAPOG00000017395	srsf5a	89	67.241	Acanthochromis_polyacanthus
ENSIPUG00000003439	srsf5a	69	85.789	ENSACIG00000011892	srsf5a	96	85.401	Amphilophus_citrinellus
ENSIPUG00000003439	srsf5a	69	84.211	ENSAOCG00000014967	srsf5a	90	65.505	Amphiprion_ocellaris
ENSIPUG00000003439	srsf5a	69	84.211	ENSAPEG00000009297	srsf5a	62	84.536	Amphiprion_percula
ENSIPUG00000003439	srsf5a	69	86.316	ENSATEG00000000198	srsf5a	100	66.774	Anabas_testudineus
ENSIPUG00000003439	srsf5a	75	69.524	ENSAPLG00000002469	-	70	76.042	Anas_platyrhynchos
ENSIPUG00000003439	srsf5a	91	70.120	ENSACAG00000029015	-	99	67.148	Anolis_carolinensis
ENSIPUG00000003439	srsf5a	69	84.817	ENSACLG00000027166	srsf5a	65	86.911	Astatotilapia_calliptera
ENSIPUG00000003439	srsf5a	69	93.684	ENSAMXG00000030476	srsf5a	100	88.339	Astyanax_mexicanus
ENSIPUG00000003439	srsf5a	69	78.010	ENSCPBG00000021518	-	99	69.149	Chrysemys_picta_bellii
ENSIPUG00000003439	srsf5a	69	55.612	ENSCSAVG00000011376	-	78	57.286	Ciona_savignyi
ENSIPUG00000003439	srsf5a	69	84.974	ENSCSEG00000008109	srsf5a	82	68.750	Cynoglossus_semilaevis
ENSIPUG00000003439	srsf5a	67	77.660	ENSCVAG00000016982	srsf5a	97	77.612	Cyprinodon_variegatus
ENSIPUG00000003439	srsf5a	100	81.362	ENSDARG00000029818	srsf5a	100	82.734	Danio_rerio
ENSIPUG00000003439	srsf5a	69	85.714	ENSELUG00000020439	srsf5a	62	85.204	Esox_lucius
ENSIPUG00000003439	srsf5a	69	75.789	ENSFALG00000005098	-	99	66.207	Ficedula_albicollis
ENSIPUG00000003439	srsf5a	68	77.000	ENSFHEG00000003955	srsf5a	97	75.862	Fundulus_heteroclitus
ENSIPUG00000003439	srsf5a	69	82.105	ENSGMOG00000000869	srsf5a	94	82.105	Gadus_morhua
ENSIPUG00000003439	srsf5a	69	75.789	ENSGALG00000033259	SRSF5A	99	66.553	Gallus_gallus
ENSIPUG00000003439	srsf5a	69	68.947	ENSGAFG00000018237	srsf5a	54	69.474	Gambusia_affinis
ENSIPUG00000003439	srsf5a	92	70.980	ENSGACG00000011761	srsf5a	95	74.510	Gasterosteus_aculeatus
ENSIPUG00000003439	srsf5a	69	78.010	ENSGAGG00000007312	-	99	69.149	Gopherus_agassizii
ENSIPUG00000003439	srsf5a	69	86.842	ENSHBUG00000014048	srsf5a	64	86.842	Haplochromis_burtoni
ENSIPUG00000003439	srsf5a	69	86.842	ENSHCOG00000017557	srsf5a	70	84.112	Hippocampus_comes
ENSIPUG00000003439	srsf5a	69	81.053	ENSKMAG00000014937	srsf5a	58	82.723	Kryptolebias_marmoratus
ENSIPUG00000003439	srsf5a	69	83.077	ENSLBEG00000017153	srsf5a	74	84.615	Labrus_bergylta
ENSIPUG00000003439	srsf5a	69	80.000	ENSLACG00000017874	-	70	82.632	Latimeria_chalumnae
ENSIPUG00000003439	srsf5a	69	87.895	ENSLOCG00000014075	srsf5a	93	76.224	Lepisosteus_oculatus
ENSIPUG00000003439	srsf5a	69	84.737	ENSMAMG00000000192	srsf5a	65	81.579	Mastacembelus_armatus
ENSIPUG00000003439	srsf5a	69	86.842	ENSMZEG00005010485	srsf5a	64	86.842	Maylandia_zebra
ENSIPUG00000003439	srsf5a	73	74.020	ENSMGAG00000011888	-	96	72.254	Meleagris_gallopavo
ENSIPUG00000003439	srsf5a	69	83.684	ENSMMOG00000009793	srsf5a	61	85.864	Mola_mola
ENSIPUG00000003439	srsf5a	69	78.421	ENSMALG00000021194	srsf5a	100	66.782	Monopterus_albus
ENSIPUG00000003439	srsf5a	69	86.842	ENSNBRG00000000771	srsf5a	64	86.842	Neolamprologus_brichardi
ENSIPUG00000003439	srsf5a	69	86.842	ENSONIG00000019583	srsf5a	64	86.842	Oreochromis_niloticus
ENSIPUG00000003439	srsf5a	70	82.383	ENSORLG00000009268	srsf5a	100	71.972	Oryzias_latipes
ENSIPUG00000003439	srsf5a	69	83.158	ENSORLG00020003281	srsf5	100	71.972	Oryzias_latipes_hni
ENSIPUG00000003439	srsf5a	70	82.383	ENSORLG00015023075	srsf5	100	71.972	Oryzias_latipes_hsok
ENSIPUG00000003439	srsf5a	69	83.158	ENSOMEG00000000628	srsf5a	66	84.737	Oryzias_melastigma
ENSIPUG00000003439	srsf5a	69	88.947	ENSPKIG00000002054	srsf5a	68	89.474	Paramormyrops_kingsleyae
ENSIPUG00000003439	srsf5a	69	76.440	ENSPSIG00000008238	-	99	61.702	Pelodiscus_sinensis
ENSIPUG00000003439	srsf5a	69	79.167	ENSPMGG00000020125	srsf5a	55	76.923	Periophthalmus_magnuspinnatus
ENSIPUG00000003439	srsf5a	69	80.628	ENSPFOG00000022993	srsf5a	60	80.628	Poecilia_formosa
ENSIPUG00000003439	srsf5a	68	80.526	ENSPLAG00000005508	srsf5a	59	76.000	Poecilia_latipinna
ENSIPUG00000003439	srsf5a	69	80.628	ENSPMEG00000016339	srsf5a	60	76.119	Poecilia_mexicana
ENSIPUG00000003439	srsf5a	69	80.208	ENSPREG00000018091	srsf5a	61	80.208	Poecilia_reticulata
ENSIPUG00000003439	srsf5a	69	86.842	ENSPNYG00000021245	srsf5a	64	86.842	Pundamilia_nyererei
ENSIPUG00000003439	srsf5a	69	90.000	ENSPNAG00000021333	srsf5a	100	82.353	Pygocentrus_nattereri
ENSIPUG00000003439	srsf5a	69	90.526	ENSSFOG00015008377	srsf5	66	91.053	Scleropages_formosus
ENSIPUG00000003439	srsf5a	69	82.500	ENSSMAG00000010899	srsf5a	90	69.825	Scophthalmus_maximus
ENSIPUG00000003439	srsf5a	69	84.211	ENSSDUG00000006103	srsf5a	100	64.423	Seriola_dumerili
ENSIPUG00000003439	srsf5a	69	84.211	ENSSLDG00000004146	srsf5a	89	68.327	Seriola_lalandi_dorsalis
ENSIPUG00000003439	srsf5a	95	62.264	ENSSPUG00000002052	-	99	60.854	Sphenodon_punctatus
ENSIPUG00000003439	srsf5a	69	84.737	ENSSPAG00000002821	srsf5a	100	65.064	Stegastes_partitus
ENSIPUG00000003439	srsf5a	69	76.316	ENSTGUG00000011492	-	68	77.368	Taeniopygia_guttata
ENSIPUG00000003439	srsf5a	69	83.854	ENSTRUG00000022908	srsf5a	65	84.375	Takifugu_rubripes
ENSIPUG00000003439	srsf5a	97	65.385	ENSXETG00000017937	srsf5a	72	82.723	Xenopus_tropicalis
ENSIPUG00000003439	srsf5a	69	78.351	ENSXCOG00000015338	srsf5a	91	57.576	Xiphophorus_couchianus
ENSIPUG00000003439	srsf5a	69	79.793	ENSXMAG00000012823	srsf5a	61	79.793	Xiphophorus_maculatus