EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003692 (Gene tree)
Gene ID: 108272596
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 84434 bases
Position: chr12:132437-216870
Accession: 108272596
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005279	ResIII	PF04851.15	3.6e-06	1	1
ENSIPUP00000005310	BRK	PF07533.16	3.4e-17	1	1
ENSIPUP00000005279	BRK	PF07533.16	3.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000005517	-	8817	XM_017481077	ENSIPUP00000005279	2938 (aa)	XP_017336566	A0A2D0S2Z3
ENSIPUT00000005547	-	8493	-	ENSIPUP00000005310	2830 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000003692's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003692's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003692	chd6	61	66.667	ENSIPUG00000016448	chd9	69	65.969
ENSIPUG00000003692	chd6	69	68.177	ENSIPUG00000007585	chd7	84	68.278
ENSIPUG00000003692	chd6	53	60.776	ENSIPUG00000019891	chd8	60	60.984

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003692	chd6	74	76.316	ENSG00000124177	CHD6	99	81.783	Homo_sapiens
ENSIPUG00000003692	chd6	84	75.870	ENSAPOG00000013736	chd6	75	80.151	Acanthochromis_polyacanthus
ENSIPUG00000003692	chd6	74	76.845	ENSAMEG00000009496	CHD6	76	77.921	Ailuropoda_melanoleuca
ENSIPUG00000003692	chd6	86	80.299	ENSATEG00000005608	chd6	77	80.299	Anabas_testudineus
ENSIPUG00000003692	chd6	74	77.258	ENSAPLG00000015592	CHD6	76	78.391	Anas_platyrhynchos
ENSIPUG00000003692	chd6	72	76.789	ENSACAG00000006842	CHD6	76	72.973	Anolis_carolinensis
ENSIPUG00000003692	chd6	74	76.319	ENSANAG00000037548	CHD6	94	85.631	Aotus_nancymaae
ENSIPUG00000003692	chd6	97	79.713	ENSAMXG00000009576	chd6	93	79.713	Astyanax_mexicanus
ENSIPUG00000003692	chd6	80	71.267	ENSBTAG00000005733	CHD6	79	77.270	Bos_taurus
ENSIPUG00000003692	chd6	74	76.253	ENSCJAG00000017920	CHD6	94	85.437	Callithrix_jacchus
ENSIPUG00000003692	chd6	75	76.845	ENSCAFG00000009236	CHD6	78	75.656	Canis_familiaris
ENSIPUG00000003692	chd6	75	76.697	ENSCAFG00020012906	CHD6	94	85.380	Canis_lupus_dingo
ENSIPUG00000003692	chd6	79	71.601	ENSCHIG00000017606	CHD6	77	77.135	Capra_hircus
ENSIPUG00000003692	chd6	62	81.679	ENSTSYG00000014635	CHD6	79	80.067	Carlito_syrichta
ENSIPUG00000003692	chd6	74	76.946	ENSCPOG00000015641	CHD6	80	74.069	Cavia_porcellus
ENSIPUG00000003692	chd6	74	76.385	ENSCCAG00000036828	CHD6	94	85.631	Cebus_capucinus
ENSIPUG00000003692	chd6	74	76.288	ENSCATG00000039248	CHD6	94	85.631	Cercocebus_atys
ENSIPUG00000003692	chd6	74	76.946	ENSCLAG00000013743	CHD6	80	74.037	Chinchilla_lanigera
ENSIPUG00000003692	chd6	74	76.451	ENSCSAG00000013997	CHD6	76	77.703	Chlorocebus_sabaeus
ENSIPUG00000003692	chd6	61	76.817	ENSCHOG00000012647	CHD6	64	76.817	Choloepus_hoffmanni
ENSIPUG00000003692	chd6	74	77.361	ENSCPBG00000019382	CHD6	77	78.193	Chrysemys_picta_bellii
ENSIPUG00000003692	chd6	74	76.502	ENSCANG00000043435	CHD6	94	85.631	Colobus_angolensis_palliatus
ENSIPUG00000003692	chd6	77	75.935	ENSCGRG00001002694	Chd6	76	76.834	Cricetulus_griseus_chok1gshd
ENSIPUG00000003692	chd6	98	78.097	ENSDARG00000017244	chd6	95	77.199	Danio_rerio
ENSIPUG00000003692	chd6	73	77.250	ENSDNOG00000004176	CHD6	76	77.446	Dasypus_novemcinctus
ENSIPUG00000003692	chd6	75	77.149	ENSEASG00005023433	CHD6	94	86.745	Equus_asinus_asinus
ENSIPUG00000003692	chd6	75	77.149	ENSECAG00000011761	CHD6	77	77.404	Equus_caballus
ENSIPUG00000003692	chd6	68	88.085	ENSELUG00000012309	chd6	90	88.085	Esox_lucius
ENSIPUG00000003692	chd6	74	76.946	ENSFCAG00000003572	CHD6	76	77.306	Felis_catus
ENSIPUG00000003692	chd6	73	78.520	ENSFALG00000012563	CHD6	75	78.401	Ficedula_albicollis
ENSIPUG00000003692	chd6	74	76.326	ENSFDAG00000013791	CHD6	78	75.591	Fukomys_damarensis
ENSIPUG00000003692	chd6	75	74.699	ENSGMOG00000011715	chd6	90	74.841	Gadus_morhua
ENSIPUG00000003692	chd6	78	73.213	ENSGACG00000000037	chd6	87	73.895	Gasterosteus_aculeatus
ENSIPUG00000003692	chd6	74	76.370	ENSGGOG00000013123	CHD6	94	85.631	Gorilla_gorilla
ENSIPUG00000003692	chd6	83	79.851	ENSHBUG00000014701	chd6	75	79.851	Haplochromis_burtoni
ENSIPUG00000003692	chd6	74	76.946	ENSHGLG00000004548	CHD6	76	77.717	Heterocephalus_glaber_female
ENSIPUG00000003692	chd6	74	76.946	ENSHGLG00100006401	CHD6	76	77.717	Heterocephalus_glaber_male
ENSIPUG00000003692	chd6	73	76.882	ENSSTOG00000013382	CHD6	80	76.272	Ictidomys_tridecemlineatus
ENSIPUG00000003692	chd6	72	78.304	ENSLACG00000010881	CHD6	82	75.188	Latimeria_chalumnae
ENSIPUG00000003692	chd6	69	83.757	ENSLOCG00000007386	chd6	82	83.450	Lepisosteus_oculatus
ENSIPUG00000003692	chd6	74	76.720	ENSLAFG00000012144	CHD6	78	76.066	Loxodonta_africana
ENSIPUG00000003692	chd6	74	76.451	ENSMFAG00000032830	CHD6	94	85.631	Macaca_fascicularis
ENSIPUG00000003692	chd6	74	76.451	ENSMMUG00000020458	CHD6	94	85.631	Macaca_mulatta
ENSIPUG00000003692	chd6	74	76.451	ENSMNEG00000040847	CHD6	94	85.631	Macaca_nemestrina
ENSIPUG00000003692	chd6	74	76.451	ENSMLEG00000031965	CHD6	94	85.631	Mandrillus_leucophaeus
ENSIPUG00000003692	chd6	86	72.426	ENSMAMG00000013111	chd6	76	80.050	Mastacembelus_armatus
ENSIPUG00000003692	chd6	74	75.600	ENSMGAG00000001121	CHD6	77	76.630	Meleagris_gallopavo
ENSIPUG00000003692	chd6	77	73.181	ENSMICG00000016641	CHD6	94	85.243	Microcebus_murinus
ENSIPUG00000003692	chd6	69	79.188	ENSMODG00000000720	-	81	79.188	Monodelphis_domestica
ENSIPUG00000003692	chd6	78	75.733	MGP_CAROLIEiJ_G0024604	Chd6	85	83.548	Mus_caroli
ENSIPUG00000003692	chd6	78	75.935	ENSMUSG00000057133	Chd6	85	83.647	Mus_musculus
ENSIPUG00000003692	chd6	77	76.812	MGP_PahariEiJ_G0026048	Chd6	85	83.449	Mus_pahari
ENSIPUG00000003692	chd6	78	75.935	MGP_SPRETEiJ_G0025526	Chd6	85	83.647	Mus_spretus
ENSIPUG00000003692	chd6	74	76.845	ENSMPUG00000017695	CHD6	77	77.634	Mustela_putorius_furo
ENSIPUG00000003692	chd6	74	77.607	ENSMLUG00000016247	CHD6	76	77.778	Myotis_lucifugus
ENSIPUG00000003692	chd6	90	75.260	ENSNBRG00000013839	chd6	97	71.262	Neolamprologus_brichardi
ENSIPUG00000003692	chd6	73	76.845	ENSNLEG00000006496	CHD6	76	76.538	Nomascus_leucogenys
ENSIPUG00000003692	chd6	76	71.753	ENSOPRG00000013376	-	76	74.765	Ochotona_princeps
ENSIPUG00000003692	chd6	74	84.497	ENSONIG00000000393	chd6	84	80.943	Oreochromis_niloticus
ENSIPUG00000003692	chd6	66	76.155	ENSOANG00000014347	CHD6	70	77.186	Ornithorhynchus_anatinus
ENSIPUG00000003692	chd6	74	76.008	ENSOCUG00000012394	CHD6	76	77.446	Oryctolagus_cuniculus
ENSIPUG00000003692	chd6	91	69.214	ENSORLG00020021891	chd6	95	88.577	Oryzias_latipes_hni
ENSIPUG00000003692	chd6	75	77.048	ENSOGAG00000002427	CHD6	76	77.770	Otolemur_garnettii
ENSIPUG00000003692	chd6	78	70.386	ENSOARG00000002597	CHD6	76	76.184	Ovis_aries
ENSIPUG00000003692	chd6	74	77.048	ENSPPRG00000014756	CHD6	76	77.374	Panthera_pardus
ENSIPUG00000003692	chd6	74	76.744	ENSPTIG00000011094	CHD6	82	71.524	Panthera_tigris_altaica
ENSIPUG00000003692	chd6	74	76.316	ENSPTRG00000013504	CHD6	94	85.631	Pan_troglodytes
ENSIPUG00000003692	chd6	74	76.385	ENSPANG00000025554	CHD6	94	85.631	Papio_anubis
ENSIPUG00000003692	chd6	91	73.125	ENSPKIG00000005578	chd6	96	62.903	Paramormyrops_kingsleyae
ENSIPUG00000003692	chd6	76	86.842	ENSPMGG00000014877	chd6	92	75.382	Periophthalmus_magnuspinnatus
ENSIPUG00000003692	chd6	74	76.862	ENSPCIG00000028037	CHD6	78	75.968	Phascolarctos_cinereus
ENSIPUG00000003692	chd6	83	79.093	ENSPLAG00000003128	chd6	77	79.093	Poecilia_latipinna
ENSIPUG00000003692	chd6	83	77.184	ENSPREG00000022653	chd6	99	88.462	Poecilia_reticulata
ENSIPUG00000003692	chd6	74	76.451	ENSPPYG00000011016	CHD6	77	77.703	Pongo_abelii
ENSIPUG00000003692	chd6	74	76.592	ENSPCOG00000001089	CHD6	94	85.437	Propithecus_coquereli
ENSIPUG00000003692	chd6	90	75.180	ENSPNYG00000022516	chd6	97	72.442	Pundamilia_nyererei
ENSIPUG00000003692	chd6	99	76.481	ENSPNAG00000012825	chd6	99	76.293	Pygocentrus_nattereri
ENSIPUG00000003692	chd6	78	75.733	ENSRNOG00000016744	Chd6	76	76.216	Rattus_norvegicus
ENSIPUG00000003692	chd6	74	76.436	ENSSBOG00000022089	CHD6	94	85.631	Saimiri_boliviensis_boliviensis
ENSIPUG00000003692	chd6	74	76.568	ENSSHAG00000017072	CHD6	80	74.589	Sarcophilus_harrisii
ENSIPUG00000003692	chd6	97	69.718	ENSSFOG00015012920	chd6	99	65.149	Scleropages_formosus
ENSIPUG00000003692	chd6	53	94.737	ENSSARG00000002615	-	55	94.737	Sorex_araneus
ENSIPUG00000003692	chd6	75	77.048	ENSSSCG00000007360	CHD6	77	77.635	Sus_scrofa
ENSIPUG00000003692	chd6	73	78.051	ENSTGUG00000003179	CHD6	79	77.612	Taeniopygia_guttata
ENSIPUG00000003692	chd6	74	81.899	ENSTNIG00000017487	chd6	85	81.899	Tetraodon_nigroviridis
ENSIPUG00000003692	chd6	73	81.023	ENSTTRG00000013438	CHD6	74	79.690	Tursiops_truncatus
ENSIPUG00000003692	chd6	75	74.194	ENSUAMG00000024036	CHD6	94	85.380	Ursus_americanus
ENSIPUG00000003692	chd6	74	76.744	ENSUMAG00000002017	CHD6	94	85.380	Ursus_maritimus
ENSIPUG00000003692	chd6	69	78.125	ENSVPAG00000007941	CHD6	74	78.125	Vicugna_pacos
ENSIPUG00000003692	chd6	75	76.845	ENSVVUG00000029164	CHD6	78	75.656	Vulpes_vulpes
ENSIPUG00000003692	chd6	70	76.425	ENSXETG00000021445	chd6	75	71.488	Xenopus_tropicalis