EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003732 (Gene tree)
Gene ID: 108277875
Gene Symbol: msi2b
Alias: zgc:174035|zgc:63812
Full Name: RNA-binding protein Musashi homolog 2-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 259818 bases
Position: chr17:14584353-14844170
Accession: 108277875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005397	RRM_1	PF00076.22	1.2e-33	1	2
ENSIPUP00000005397	RRM_1	PF00076.22	1.2e-33	2	2
ENSIPUP00000005416	RRM_1	PF00076.22	1.7e-33	1	2
ENSIPUP00000005416	RRM_1	PF00076.22	1.7e-33	2	2
ENSIPUP00000005439	RRM_1	PF00076.22	1.7e-33	1	2
ENSIPUP00000005439	RRM_1	PF00076.22	1.7e-33	2	2
ENSIPUP00000005377	RRM_1	PF00076.22	1.8e-33	1	2
ENSIPUP00000005377	RRM_1	PF00076.22	1.8e-33	2	2
ENSIPUP00000005473	RRM_1	PF00076.22	4e-29	1	2
ENSIPUP00000005473	RRM_1	PF00076.22	4e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000005658	-	1309	XM_017490884	ENSIPUP00000005416	388 (aa)	XP_017346373	A0A2D0SUL8
ENSIPUT00000005615	-	1357	XM_017490882	ENSIPUP00000005377	404 (aa)	XP_017346371	A0A2D0SV20
ENSIPUT00000005715	-	918	-	ENSIPUP00000005473	305 (aa)	-	-
ENSIPUT00000005637	-	1177	XM_017490886	ENSIPUP00000005397	344 (aa)	XP_017346375	A0A2D0SVM7
ENSIPUT00000005682	-	1344	XM_017490883	ENSIPUP00000005439	388 (aa)	XP_017346372	A0A2D0SUK3

Gene Model

Click here to download ENSIPUG00000003732's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003732's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003732	msi2b	51	43.023	ENSIPUG00000019815	RO32	74	37.815
ENSIPUG00000003732	msi2b	55	36.517	ENSIPUG00000001991	-	79	40.782
ENSIPUG00000003732	msi2b	52	42.391	ENSIPUG00000022440	-	88	38.235
ENSIPUG00000003732	msi2b	96	70.957	ENSIPUG00000001976	msi1	93	79.724
ENSIPUG00000003732	msi2b	50	35.333	ENSIPUG00000004992	tardbp	68	35.333
ENSIPUG00000003732	msi2b	55	46.154	ENSIPUG00000002023	hnrnpa1a	69	44.068
ENSIPUG00000003732	msi2b	54	48.128	ENSIPUG00000020220	hnrnpab	61	46.154
ENSIPUG00000003732	msi2b	51	48.108	ENSIPUG00000018218	HNRNPAB	63	46.818
ENSIPUG00000003732	msi2b	100	90.735	ENSIPUG00000021097	msi2a	100	97.531
ENSIPUG00000003732	msi2b	92	38.889	ENSIPUG00000006899	dazap1	64	38.636
ENSIPUG00000003732	msi2b	51	49.714	ENSIPUG00000024951	hnrnpdl	80	42.623
ENSIPUG00000003732	msi2b	53	45.109	ENSIPUG00000024954	hnrnpd	61	48.684

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003732	msi2b	93	93.886	ENSG00000153944	MSI2	96	94.603	Homo_sapiens
ENSIPUG00000003732	msi2b	100	90.415	ENSAPOG00000001658	msi2a	100	96.296	Acanthochromis_polyacanthus
ENSIPUG00000003732	msi2b	93	86.452	ENSAMEG00000002697	MSI2	96	90.385	Ailuropoda_melanoleuca
ENSIPUG00000003732	msi2b	100	87.755	ENSACIG00000009475	msi2a	100	87.755	Amphilophus_citrinellus
ENSIPUG00000003732	msi2b	55	78.667	ENSAOCG00000014822	msi2a	69	78.667	Amphiprion_ocellaris
ENSIPUG00000003732	msi2b	100	90.415	ENSAPEG00000007706	msi2a	100	90.415	Amphiprion_percula
ENSIPUG00000003732	msi2b	100	90.415	ENSATEG00000010498	msi2a	100	96.296	Anabas_testudineus
ENSIPUG00000003732	msi2b	93	90.288	ENSATEG00000003301	-	100	90.288	Anabas_testudineus
ENSIPUG00000003732	msi2b	89	89.674	ENSACAG00000005452	MSI2	88	83.051	Anolis_carolinensis
ENSIPUG00000003732	msi2b	92	94.603	ENSANAG00000037827	MSI2	96	94.603	Aotus_nancymaae
ENSIPUG00000003732	msi2b	100	89.776	ENSACLG00000007752	msi2a	100	95.885	Astatotilapia_calliptera
ENSIPUG00000003732	msi2b	100	94.087	ENSAMXG00000032796	msi2a	100	93.830	Astyanax_mexicanus
ENSIPUG00000003732	msi2b	100	97.680	ENSAMXG00000010474	msi2b	100	97.680	Astyanax_mexicanus
ENSIPUG00000003732	msi2b	93	91.438	ENSBTAG00000004406	MSI2	99	91.438	Bos_taurus
ENSIPUG00000003732	msi2b	66	60.494	WBGene00003423	msi-1	76	60.494	Caenorhabditis_elegans
ENSIPUG00000003732	msi2b	92	94.603	ENSCJAG00000013998	MSI2	96	94.603	Callithrix_jacchus
ENSIPUG00000003732	msi2b	93	86.408	ENSCAFG00020025620	MSI2	81	86.452	Canis_lupus_dingo
ENSIPUG00000003732	msi2b	100	85.061	ENSCHIG00000016580	MSI2	96	93.016	Capra_hircus
ENSIPUG00000003732	msi2b	93	86.879	ENSCPOG00000034042	MSI2	99	86.879	Cavia_porcellus
ENSIPUG00000003732	msi2b	92	94.603	ENSCCAG00000033927	MSI2	96	94.603	Cebus_capucinus
ENSIPUG00000003732	msi2b	92	94.273	ENSCATG00000040879	MSI2	96	94.286	Cercocebus_atys
ENSIPUG00000003732	msi2b	100	82.081	ENSCLAG00000014325	MSI2	96	89.489	Chinchilla_lanigera
ENSIPUG00000003732	msi2b	92	94.603	ENSCSAG00000005633	MSI2	96	94.603	Chlorocebus_sabaeus
ENSIPUG00000003732	msi2b	89	63.571	ENSCHOG00000008660	MSI2	83	88.235	Choloepus_hoffmanni
ENSIPUG00000003732	msi2b	100	84.507	ENSCPBG00000009942	MSI2	96	86.087	Chrysemys_picta_bellii
ENSIPUG00000003732	msi2b	86	53.333	ENSCING00000018579	-	99	51.754	Ciona_intestinalis
ENSIPUG00000003732	msi2b	58	68.224	ENSCSAVG00000010397	-	67	68.900	Ciona_savignyi
ENSIPUG00000003732	msi2b	92	94.273	ENSCANG00000036414	MSI2	91	96.861	Colobus_angolensis_palliatus
ENSIPUG00000003732	msi2b	100	86.018	ENSCGRG00001013330	Msi2	96	93.987	Cricetulus_griseus_chok1gshd
ENSIPUG00000003732	msi2b	93	86.174	ENSCGRG00000003141	Msi2	100	86.174	Cricetulus_griseus_crigri
ENSIPUG00000003732	msi2b	55	75.543	ENSCSEG00000013549	msi2a	100	75.543	Cynoglossus_semilaevis
ENSIPUG00000003732	msi2b	100	79.012	ENSCSEG00000003266	-	100	79.012	Cynoglossus_semilaevis
ENSIPUG00000003732	msi2b	66	82.353	ENSCSEG00000013557	msi2a	97	66.079	Cynoglossus_semilaevis
ENSIPUG00000003732	msi2b	100	92.526	ENSCVAG00000017075	msi2a	100	96.296	Cyprinodon_variegatus
ENSIPUG00000003732	msi2b	100	93.137	ENSDARG00000032614	msi2b	100	100.000	Danio_rerio
ENSIPUG00000003732	msi2b	100	89.433	ENSDARG00000033901	msi2a	100	89.433	Danio_rerio
ENSIPUG00000003732	msi2b	93	91.667	ENSDNOG00000014501	MSI2	100	91.667	Dasypus_novemcinctus
ENSIPUG00000003732	msi2b	79	84.264	ENSDORG00000005394	Msi2	84	84.264	Dipodomys_ordii
ENSIPUG00000003732	msi2b	96	54.068	FBgn0260943	Rbp6	88	66.667	Drosophila_melanogaster
ENSIPUG00000003732	msi2b	64	74.342	ENSETEG00000012450	-	64	74.342	Echinops_telfairi
ENSIPUG00000003732	msi2b	93	61.022	ENSEBUG00000006732	msi2a	83	65.217	Eptatretus_burgeri
ENSIPUG00000003732	msi2b	93	88.963	ENSEASG00005002965	MSI2	99	79.701	Equus_asinus_asinus
ENSIPUG00000003732	msi2b	91	95.089	ENSECAG00000011435	MSI2	99	85.032	Equus_caballus
ENSIPUG00000003732	msi2b	86	75.494	ENSEEUG00000007810	MSI2	100	80.632	Erinaceus_europaeus
ENSIPUG00000003732	msi2b	100	92.013	ENSELUG00000011747	msi2a	100	92.013	Esox_lucius
ENSIPUG00000003732	msi2b	100	92.658	ENSELUG00000001361	msi2b	100	92.658	Esox_lucius
ENSIPUG00000003732	msi2b	92	94.603	ENSFCAG00000041686	MSI2	96	94.603	Felis_catus
ENSIPUG00000003732	msi2b	55	76.923	ENSFCAG00000033787	-	82	76.923	Felis_catus
ENSIPUG00000003732	msi2b	93	86.452	ENSFDAG00000016118	MSI2	100	86.452	Fukomys_damarensis
ENSIPUG00000003732	msi2b	100	89.776	ENSFHEG00000000084	msi2a	96	95.395	Fundulus_heteroclitus
ENSIPUG00000003732	msi2b	53	94.231	ENSGMOG00000007596	-	100	94.231	Gadus_morhua
ENSIPUG00000003732	msi2b	100	81.214	ENSGALG00000005567	MSI2	96	88.589	Gallus_gallus
ENSIPUG00000003732	msi2b	95	81.908	ENSGAFG00000006974	msi2a	90	96.026	Gambusia_affinis
ENSIPUG00000003732	msi2b	100	84.906	ENSGAGG00000016542	MSI2	100	83.863	Gopherus_agassizii
ENSIPUG00000003732	msi2b	93	93.886	ENSGGOG00000013182	MSI2	91	96.861	Gorilla_gorilla
ENSIPUG00000003732	msi2b	100	89.776	ENSHBUG00000020800	msi2a	100	95.885	Haplochromis_burtoni
ENSIPUG00000003732	msi2b	100	74.852	ENSHGLG00000012444	MSI2	96	80.180	Heterocephalus_glaber_female
ENSIPUG00000003732	msi2b	79	73.896	ENSHGLG00100003744	MSI2	100	85.990	Heterocephalus_glaber_male
ENSIPUG00000003732	msi2b	95	95.618	ENSHCOG00000000266	msi2a	100	86.978	Hippocampus_comes
ENSIPUG00000003732	msi2b	94	79.297	ENSHCOG00000017241	-	98	70.896	Hippocampus_comes
ENSIPUG00000003732	msi2b	93	86.879	ENSSTOG00000007884	MSI2	99	86.879	Ictidomys_tridecemlineatus
ENSIPUG00000003732	msi2b	69	78.421	ENSJJAG00000006292	-	100	81.407	Jaculus_jaculus
ENSIPUG00000003732	msi2b	100	91.753	ENSKMAG00000009494	msi2a	100	91.753	Kryptolebias_marmoratus
ENSIPUG00000003732	msi2b	95	78.655	ENSLBEG00000026223	-	100	78.655	Labrus_bergylta
ENSIPUG00000003732	msi2b	100	90.415	ENSLBEG00000007061	msi2a	100	90.415	Labrus_bergylta
ENSIPUG00000003732	msi2b	53	77.778	ENSLACG00000016798	MSI2	98	93.407	Latimeria_chalumnae
ENSIPUG00000003732	msi2b	100	95.361	ENSLOCG00000004675	msi2b	100	95.361	Lepisosteus_oculatus
ENSIPUG00000003732	msi2b	92	94.273	ENSMFAG00000003775	MSI2	91	96.861	Macaca_fascicularis
ENSIPUG00000003732	msi2b	92	94.273	ENSMMUG00000002069	MSI2	91	96.861	Macaca_mulatta
ENSIPUG00000003732	msi2b	92	94.603	ENSMNEG00000045275	MSI2	96	94.603	Macaca_nemestrina
ENSIPUG00000003732	msi2b	92	94.273	ENSMLEG00000033888	MSI2	91	96.861	Mandrillus_leucophaeus
ENSIPUG00000003732	msi2b	100	88.179	ENSMAMG00000002488	-	99	96.689	Mastacembelus_armatus
ENSIPUG00000003732	msi2b	100	90.127	ENSMAMG00000010503	msi2a	100	96.296	Mastacembelus_armatus
ENSIPUG00000003732	msi2b	100	89.776	ENSMZEG00005007676	msi2a	100	95.885	Maylandia_zebra
ENSIPUG00000003732	msi2b	100	81.556	ENSMAUG00000003862	Msi2	96	88.922	Mesocricetus_auratus
ENSIPUG00000003732	msi2b	100	67.267	ENSMICG00000032913	-	96	75.000	Microcebus_murinus
ENSIPUG00000003732	msi2b	97	90.448	ENSMICG00000013598	-	96	94.603	Microcebus_murinus
ENSIPUG00000003732	msi2b	100	81.792	ENSMOCG00000005820	Msi2	96	89.189	Microtus_ochrogaster
ENSIPUG00000003732	msi2b	86	85.811	ENSMMOG00000008348	msi2a	85	95.928	Mola_mola
ENSIPUG00000003732	msi2b	79	73.494	ENSMODG00000014790	MSI2	100	85.507	Monodelphis_domestica
ENSIPUG00000003732	msi2b	100	95.425	ENSMALG00000000071	msi2a	100	96.296	Monopterus_albus
ENSIPUG00000003732	msi2b	92	94.286	MGP_CAROLIEiJ_G0016948	Msi2	100	99.115	Mus_caroli
ENSIPUG00000003732	msi2b	92	94.286	ENSMUSG00000069769	Msi2	100	99.115	Mus_musculus
ENSIPUG00000003732	msi2b	92	94.286	MGP_PahariEiJ_G0018079	Msi2	100	99.115	Mus_pahari
ENSIPUG00000003732	msi2b	92	94.286	MGP_SPRETEiJ_G0017795	Msi2	100	99.115	Mus_spretus
ENSIPUG00000003732	msi2b	93	91.781	ENSMPUG00000015377	MSI2	99	91.781	Mustela_putorius_furo
ENSIPUG00000003732	msi2b	93	91.781	ENSMLUG00000007865	MSI2	99	91.781	Myotis_lucifugus
ENSIPUG00000003732	msi2b	100	81.792	ENSNGAG00000017807	Msi2	96	89.189	Nannospalax_galili
ENSIPUG00000003732	msi2b	100	92.268	ENSNBRG00000014596	msi2a	100	92.268	Neolamprologus_brichardi
ENSIPUG00000003732	msi2b	92	94.273	ENSNLEG00000008059	MSI2	95	96.651	Nomascus_leucogenys
ENSIPUG00000003732	msi2b	64	86.184	ENSOPRG00000000872	-	64	86.184	Ochotona_princeps
ENSIPUG00000003732	msi2b	100	82.081	ENSODEG00000011974	MSI2	96	89.489	Octodon_degus
ENSIPUG00000003732	msi2b	55	96.026	ENSONIG00000001972	msi2a	84	96.026	Oreochromis_niloticus
ENSIPUG00000003732	msi2b	85	94.468	ENSOANG00000005667	MSI2	99	77.069	Ornithorhynchus_anatinus
ENSIPUG00000003732	msi2b	93	91.781	ENSOCUG00000010440	MSI2	99	91.781	Oryctolagus_cuniculus
ENSIPUG00000003732	msi2b	100	92.526	ENSORLG00000009671	msi2a	100	96.296	Oryzias_latipes
ENSIPUG00000003732	msi2b	100	88.179	ENSORLG00020021556	msi2a	100	96.296	Oryzias_latipes_hni
ENSIPUG00000003732	msi2b	100	92.526	ENSORLG00015004592	msi2a	100	96.296	Oryzias_latipes_hsok
ENSIPUG00000003732	msi2b	100	92.526	ENSOMEG00000000146	msi2a	100	96.296	Oryzias_melastigma
ENSIPUG00000003732	msi2b	93	86.986	ENSOGAG00000005621	MSI2	95	91.156	Otolemur_garnettii
ENSIPUG00000003732	msi2b	93	86.452	ENSPPAG00000037697	MSI2	91	96.861	Pan_paniscus
ENSIPUG00000003732	msi2b	93	91.781	ENSPPRG00000001848	MSI2	91	96.861	Panthera_pardus
ENSIPUG00000003732	msi2b	69	77.637	ENSPTIG00000021873	-	90	77.637	Panthera_tigris_altaica
ENSIPUG00000003732	msi2b	93	86.452	ENSPTIG00000021678	MSI2	96	86.452	Panthera_tigris_altaica
ENSIPUG00000003732	msi2b	93	93.886	ENSPTRG00000009437	MSI2	91	96.861	Pan_troglodytes
ENSIPUG00000003732	msi2b	92	94.603	ENSPANG00000022319	MSI2	96	94.603	Papio_anubis
ENSIPUG00000003732	msi2b	51	72.072	ENSPKIG00000017107	-	81	96.703	Paramormyrops_kingsleyae
ENSIPUG00000003732	msi2b	92	91.429	ENSPKIG00000007038	-	96	94.650	Paramormyrops_kingsleyae
ENSIPUG00000003732	msi2b	92	96.970	ENSPSIG00000008618	MSI2	100	87.685	Pelodiscus_sinensis
ENSIPUG00000003732	msi2b	100	89.776	ENSPMGG00000005888	msi2a	100	89.776	Periophthalmus_magnuspinnatus
ENSIPUG00000003732	msi2b	100	80.226	ENSPCIG00000006063	MSI2	96	87.390	Phascolarctos_cinereus
ENSIPUG00000003732	msi2b	54	94.286	ENSPFOG00000019337	MSI2	92	94.286	Poecilia_formosa
ENSIPUG00000003732	msi2b	69	92.308	ENSPLAG00000000436	msi2a	76	92.958	Poecilia_latipinna
ENSIPUG00000003732	msi2b	55	82.031	ENSPMEG00000013247	msi2a	80	82.031	Poecilia_mexicana
ENSIPUG00000003732	msi2b	99	87.859	ENSPREG00000000881	msi2a	100	88.206	Poecilia_reticulata
ENSIPUG00000003732	msi2b	93	91.518	ENSPPYG00000008244	-	94	91.556	Pongo_abelii
ENSIPUG00000003732	msi2b	58	88.462	ENSPCAG00000010552	MSI2	95	64.444	Procavia_capensis
ENSIPUG00000003732	msi2b	93	83.904	ENSPVAG00000017053	MSI2	85	99.451	Pteropus_vampyrus
ENSIPUG00000003732	msi2b	100	89.776	ENSPNYG00000018393	msi2a	100	95.885	Pundamilia_nyererei
ENSIPUG00000003732	msi2b	100	94.859	ENSPNAG00000014957	msi2a	100	94.602	Pygocentrus_nattereri
ENSIPUG00000003732	msi2b	100	97.943	ENSPNAG00000000844	msi2b	100	97.943	Pygocentrus_nattereri
ENSIPUG00000003732	msi2b	93	91.367	ENSRNOG00000025338	Msi2	100	91.367	Rattus_norvegicus
ENSIPUG00000003732	msi2b	93	91.525	ENSSBOG00000026425	MSI2	91	96.861	Saimiri_boliviensis_boliviensis
ENSIPUG00000003732	msi2b	93	85.806	ENSSHAG00000008672	MSI2	100	85.806	Sarcophilus_harrisii
ENSIPUG00000003732	msi2b	93	86.689	ENSSFOG00015021687	-	97	94.144	Scleropages_formosus
ENSIPUG00000003732	msi2b	95	86.192	ENSSFOG00015012168	msi2b	100	72.549	Scleropages_formosus
ENSIPUG00000003732	msi2b	100	90.096	ENSSMAG00000018484	msi2a	100	96.296	Scophthalmus_maximus
ENSIPUG00000003732	msi2b	100	90.415	ENSSDUG00000014507	msi2a	100	96.296	Seriola_dumerili
ENSIPUG00000003732	msi2b	100	82.388	ENSSDUG00000021968	-	99	96.026	Seriola_dumerili
ENSIPUG00000003732	msi2b	100	90.415	ENSSLDG00000017172	msi2a	100	96.296	Seriola_lalandi_dorsalis
ENSIPUG00000003732	msi2b	55	94.304	ENSSPUG00000000913	-	94	94.304	Sphenodon_punctatus
ENSIPUG00000003732	msi2b	100	86.978	ENSSPAG00000017793	msi2a	100	96.296	Stegastes_partitus
ENSIPUG00000003732	msi2b	92	94.603	ENSSSCG00000038505	MSI2	100	95.885	Sus_scrofa
ENSIPUG00000003732	msi2b	79	73.896	ENSTGUG00000008452	MSI2	100	85.990	Taeniopygia_guttata
ENSIPUG00000003732	msi2b	90	96.016	ENSTRUG00000021248	msi2a	96	88.162	Takifugu_rubripes
ENSIPUG00000003732	msi2b	70	79.339	ENSTBEG00000001241	MSI2	73	79.339	Tupaia_belangeri
ENSIPUG00000003732	msi2b	91	85.714	ENSTTRG00000002189	MSI2	91	97.368	Tursiops_truncatus
ENSIPUG00000003732	msi2b	93	91.781	ENSUAMG00000000700	MSI2	96	97.748	Ursus_americanus
ENSIPUG00000003732	msi2b	85	87.925	ENSUMAG00000000505	MSI2	100	97.409	Ursus_maritimus
ENSIPUG00000003732	msi2b	53	84.066	ENSVPAG00000006837	-	62	84.066	Vicugna_pacos
ENSIPUG00000003732	msi2b	92	95.683	ENSVVUG00000011783	MSI2	97	94.931	Vulpes_vulpes
ENSIPUG00000003732	msi2b	100	90.206	ENSXCOG00000006113	msi2a	100	90.206	Xiphophorus_couchianus
ENSIPUG00000003732	msi2b	100	86.486	ENSXMAG00000000608	msi2a	100	96.296	Xiphophorus_maculatus