EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000003960 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Plus strand
Length: 8304 bases
Position: chr1:36227858-36236161
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	1	6
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	2	6
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	3	6
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	4	6
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	5	6
ENSIPUP00000005671	zf-C2H2	PF00096.26	1.3e-40	6	6
ENSIPUP00000005671	zf-met	PF12874.7	8.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000005930	-	852	-	ENSIPUP00000005671	283 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000003960's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000003960's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000003960	-	86	63.592	ENSIPUG00000021998	-	90	63.592
ENSIPUG00000003960	-	90	57.009	ENSIPUG00000023688	-	97	57.009
ENSIPUG00000003960	-	84	59.346	ENSIPUG00000015121	-	70	59.346
ENSIPUG00000003960	-	84	55.714	ENSIPUG00000015233	-	70	55.714
ENSIPUG00000003960	-	94	60.930	ENSIPUG00000016075	-	95	60.930
ENSIPUG00000003960	-	84	65.217	ENSIPUG00000012960	-	90	65.217
ENSIPUG00000003960	-	77	60.930	ENSIPUG00000015177	-	66	60.930
ENSIPUG00000003960	-	80	40.933	ENSIPUG00000011399	zbtb47b	74	40.933
ENSIPUG00000003960	-	84	56.784	ENSIPUG00000017575	-	66	56.784
ENSIPUG00000003960	-	83	55.497	ENSIPUG00000004428	-	73	55.497
ENSIPUG00000003960	-	86	62.562	ENSIPUG00000021515	-	85	62.562
ENSIPUG00000003960	-	87	60.386	ENSIPUG00000021518	-	93	60.386
ENSIPUG00000003960	-	81	44.286	ENSIPUG00000012109	ZN12	55	44.286
ENSIPUG00000003960	-	91	59.669	ENSIPUG00000021434	-	96	59.669
ENSIPUG00000003960	-	84	59.596	ENSIPUG00000001941	-	88	59.596
ENSIPUG00000003960	-	77	63.830	ENSIPUG00000015601	-	68	63.830
ENSIPUG00000003960	-	89	47.586	ENSIPUG00000016009	znf596	91	47.586
ENSIPUG00000003960	-	84	57.143	ENSIPUG00000005733	-	68	57.143
ENSIPUG00000003960	-	90	59.330	ENSIPUG00000023513	-	53	61.538
ENSIPUG00000003960	-	87	60.366	ENSIPUG00000022741	-	81	60.366
ENSIPUG00000003960	-	80	36.709	ENSIPUG00000015844	snai1b	56	39.326
ENSIPUG00000003960	-	78	41.096	ENSIPUG00000024011	-	55	41.096
ENSIPUG00000003960	-	73	41.667	ENSIPUG00000005547	-	50	41.667
ENSIPUG00000003960	-	87	44.218	ENSIPUG00000012769	gfi1b	71	44.218
ENSIPUG00000003960	-	84	58.525	ENSIPUG00000006936	-	93	61.333
ENSIPUG00000003960	-	84	65.563	ENSIPUG00000021484	-	98	65.563
ENSIPUG00000003960	-	86	53.642	ENSIPUG00000021527	-	99	53.642
ENSIPUG00000003960	-	75	35.885	ENSIPUG00000013526	-	84	35.885
ENSIPUG00000003960	-	85	63.380	ENSIPUG00000015468	-	88	63.380
ENSIPUG00000003960	-	87	49.763	ENSIPUG00000013315	-	95	49.763
ENSIPUG00000003960	-	80	42.487	ENSIPUG00000003040	zbtb47a	76	42.487
ENSIPUG00000003960	-	86	61.468	ENSIPUG00000009750	-	93	61.468
ENSIPUG00000003960	-	86	40.404	ENSIPUG00000008581	znf319b	88	40.404
ENSIPUG00000003960	-	86	47.343	ENSIPUG00000022266	ZNF135	67	47.343
ENSIPUG00000003960	-	83	61.224	ENSIPUG00000021556	-	88	61.224
ENSIPUG00000003960	-	83	60.638	ENSIPUG00000005339	-	83	60.638
ENSIPUG00000003960	-	88	41.732	ENSIPUG00000004905	znf236	60	41.732
ENSIPUG00000003960	-	75	51.905	ENSIPUG00000023761	-	58	51.905
ENSIPUG00000003960	-	90	59.551	ENSIPUG00000011073	-	98	59.551
ENSIPUG00000003960	-	86	43.373	ENSIPUG00000012830	-	87	43.373
ENSIPUG00000003960	-	88	40.714	ENSIPUG00000000131	snai2	52	40.602
ENSIPUG00000003960	-	86	45.270	ENSIPUG00000007076	-	89	36.667
ENSIPUG00000003960	-	77	44.444	ENSIPUG00000011652	znf648	76	44.444
ENSIPUG00000003960	-	76	50.000	ENSIPUG00000013083	-	50	50.000
ENSIPUG00000003960	-	83	35.227	ENSIPUG00000015037	znf711	50	35.227
ENSIPUG00000003960	-	90	40.201	ENSIPUG00000011258	-	86	40.201
ENSIPUG00000003960	-	89	58.571	ENSIPUG00000006916	-	95	58.571
ENSIPUG00000003960	-	86	65.842	ENSIPUG00000015400	-	94	65.842
ENSIPUG00000003960	-	83	41.633	ENSIPUG00000019205	-	75	44.240
ENSIPUG00000003960	-	84	60.417	ENSIPUG00000021472	-	75	60.417
ENSIPUG00000003960	-	87	60.280	ENSIPUG00000022751	-	95	60.280
ENSIPUG00000003960	-	87	55.026	ENSIPUG00000005581	-	82	55.026
ENSIPUG00000003960	-	86	58.411	ENSIPUG00000021441	-	94	58.411
ENSIPUG00000003960	-	89	45.205	ENSIPUG00000018102	znf646	61	45.205
ENSIPUG00000003960	-	84	62.085	ENSIPUG00000003011	-	55	62.085
ENSIPUG00000003960	-	74	37.584	ENSIPUG00000002075	znf341	50	37.584
ENSIPUG00000003960	-	90	58.937	ENSIPUG00000013065	-	93	58.937
ENSIPUG00000003960	-	92	44.706	ENSIPUG00000001248	prdm5	73	44.706
ENSIPUG00000003960	-	93	56.621	ENSIPUG00000023635	-	97	59.615
ENSIPUG00000003960	-	84	59.204	ENSIPUG00000007934	-	95	59.204
ENSIPUG00000003960	-	84	68.201	ENSIPUG00000002655	-	98	70.833

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000003960	-	86	52.153	ENSACIG00000019791	-	92	51.892	Amphilophus_citrinellus
ENSIPUG00000003960	-	84	51.942	ENSACIG00000011153	-	77	51.942	Amphilophus_citrinellus
ENSIPUG00000003960	-	75	48.969	ENSANAG00000032414	-	82	48.969	Aotus_nancymaae
ENSIPUG00000003960	-	90	42.672	ENSACLG00000014167	-	64	51.402	Astatotilapia_calliptera
ENSIPUG00000003960	-	81	46.083	ENSACLG00000022499	-	81	46.083	Astatotilapia_calliptera
ENSIPUG00000003960	-	81	47.802	ENSACLG00000017329	-	81	47.802	Astatotilapia_calliptera
ENSIPUG00000003960	-	84	49.533	ENSACLG00000020474	-	84	49.533	Astatotilapia_calliptera
ENSIPUG00000003960	-	77	50.521	ENSACLG00000001507	-	71	50.521	Astatotilapia_calliptera
ENSIPUG00000003960	-	86	57.820	ENSAMXG00000039770	-	82	57.820	Astyanax_mexicanus
ENSIPUG00000003960	-	84	64.019	ENSAMXG00000031501	-	91	64.019	Astyanax_mexicanus
ENSIPUG00000003960	-	87	63.256	ENSAMXG00000031646	-	93	63.256	Astyanax_mexicanus
ENSIPUG00000003960	-	88	59.722	ENSAMXG00000036849	-	88	59.722	Astyanax_mexicanus
ENSIPUG00000003960	-	87	64.651	ENSAMXG00000039162	-	95	64.651	Astyanax_mexicanus
ENSIPUG00000003960	-	88	61.429	ENSAMXG00000010078	-	87	61.429	Astyanax_mexicanus
ENSIPUG00000003960	-	85	64.593	ENSAMXG00000038324	-	78	64.593	Astyanax_mexicanus
ENSIPUG00000003960	-	87	62.814	ENSAMXG00000031844	-	90	62.814	Astyanax_mexicanus
ENSIPUG00000003960	-	87	50.388	ENSCHIG00000015741	-	85	50.388	Capra_hircus
ENSIPUG00000003960	-	75	51.256	ENSCCAG00000035188	-	84	54.502	Cebus_capucinus
ENSIPUG00000003960	-	84	52.174	ENSCPBG00000001258	-	90	52.174	Chrysemys_picta_bellii
ENSIPUG00000003960	-	87	51.185	ENSDNOG00000048084	-	98	51.185	Dasypus_novemcinctus
ENSIPUG00000003960	-	84	42.396	ENSETEG00000002865	-	80	42.396	Echinops_telfairi
ENSIPUG00000003960	-	78	42.169	ENSEBUG00000011582	-	73	44.022	Eptatretus_burgeri
ENSIPUG00000003960	-	87	52.607	ENSEBUG00000012748	-	69	52.607	Eptatretus_burgeri
ENSIPUG00000003960	-	93	52.427	ENSEBUG00000008157	-	98	52.427	Eptatretus_burgeri
ENSIPUG00000003960	-	98	51.667	ENSEBUG00000011479	-	79	51.667	Eptatretus_burgeri
ENSIPUG00000003960	-	84	51.456	ENSECAG00000035557	-	74	51.456	Equus_caballus
ENSIPUG00000003960	-	86	49.444	ENSFHEG00000016184	-	73	49.444	Fundulus_heteroclitus
ENSIPUG00000003960	-	77	45.366	ENSGMOG00000004315	-	95	45.366	Gadus_morhua
ENSIPUG00000003960	-	87	43.000	ENSGACG00000019863	-	98	43.000	Gasterosteus_aculeatus
ENSIPUG00000003960	-	85	52.133	ENSGAGG00000013851	-	70	52.133	Gopherus_agassizii
ENSIPUG00000003960	-	84	52.683	ENSGAGG00000007230	-	91	52.683	Gopherus_agassizii
ENSIPUG00000003960	-	85	45.614	ENSHBUG00000017372	-	82	47.887	Haplochromis_burtoni
ENSIPUG00000003960	-	91	43.056	ENSHBUG00000013264	-	85	43.056	Haplochromis_burtoni
ENSIPUG00000003960	-	83	45.217	ENSHBUG00000006238	-	97	45.217	Haplochromis_burtoni
ENSIPUG00000003960	-	86	49.029	ENSHBUG00000019800	-	95	49.029	Haplochromis_burtoni
ENSIPUG00000003960	-	85	48.649	ENSHBUG00000000146	-	78	48.649	Haplochromis_burtoni
ENSIPUG00000003960	-	87	43.777	ENSHBUG00000021028	-	81	43.777	Haplochromis_burtoni
ENSIPUG00000003960	-	94	49.533	ENSHGLG00000018394	-	96	49.533	Heterocephalus_glaber_female
ENSIPUG00000003960	-	90	52.607	ENSSTOG00000034297	-	66	52.607	Ictidomys_tridecemlineatus
ENSIPUG00000003960	-	75	58.768	ENSMFAG00000046052	-	85	58.768	Macaca_fascicularis
ENSIPUG00000003960	-	78	58.768	ENSMNEG00000041636	-	85	58.768	Macaca_nemestrina
ENSIPUG00000003960	-	75	58.768	ENSMLEG00000032640	-	85	58.768	Mandrillus_leucophaeus
ENSIPUG00000003960	-	95	44.082	ENSMAMG00000009051	-	91	47.468	Mastacembelus_armatus
ENSIPUG00000003960	-	76	44.550	ENSMZEG00005019982	-	95	45.455	Maylandia_zebra
ENSIPUG00000003960	-	77	50.472	ENSMZEG00005021421	-	95	50.472	Maylandia_zebra
ENSIPUG00000003960	-	82	47.196	ENSMZEG00005027285	-	82	47.368	Maylandia_zebra
ENSIPUG00000003960	-	86	41.558	ENSMZEG00005027950	-	99	41.558	Maylandia_zebra
ENSIPUG00000003960	-	83	48.387	ENSMZEG00005012737	-	80	48.387	Maylandia_zebra
ENSIPUG00000003960	-	81	48.555	ENSMZEG00005020736	-	90	45.714	Maylandia_zebra
ENSIPUG00000003960	-	83	53.333	ENSMALG00000004413	-	93	53.333	Monopterus_albus
ENSIPUG00000003960	-	84	54.268	ENSNBRG00000015873	-	99	51.366	Neolamprologus_brichardi
ENSIPUG00000003960	-	78	47.059	ENSNBRG00000016582	-	84	47.059	Neolamprologus_brichardi
ENSIPUG00000003960	-	75	45.498	ENSNBRG00000015652	-	82	45.498	Neolamprologus_brichardi
ENSIPUG00000003960	-	76	45.545	ENSNBRG00000016603	-	87	45.545	Neolamprologus_brichardi
ENSIPUG00000003960	-	85	47.644	ENSNBRG00000013604	-	69	47.644	Neolamprologus_brichardi
ENSIPUG00000003960	-	76	40.000	ENSONIG00000000093	-	99	44.643	Oreochromis_niloticus
ENSIPUG00000003960	-	76	49.524	ENSONIG00000015166	-	100	49.524	Oreochromis_niloticus
ENSIPUG00000003960	-	81	39.037	ENSONIG00000007931	-	91	39.037	Oreochromis_niloticus
ENSIPUG00000003960	-	83	45.665	ENSONIG00000000122	-	100	45.665	Oreochromis_niloticus
ENSIPUG00000003960	-	88	39.904	ENSONIG00000001834	-	100	39.904	Oreochromis_niloticus
ENSIPUG00000003960	-	76	50.711	ENSONIG00000021124	-	99	50.711	Oreochromis_niloticus
ENSIPUG00000003960	-	85	51.136	ENSONIG00000020516	-	96	51.136	Oreochromis_niloticus
ENSIPUG00000003960	-	76	41.958	ENSONIG00000008953	-	97	41.958	Oreochromis_niloticus
ENSIPUG00000003960	-	86	49.425	ENSORLG00015012951	-	79	45.699	Oryzias_latipes_hsok
ENSIPUG00000003960	-	95	54.762	ENSOGAG00000025289	-	83	54.762	Otolemur_garnettii
ENSIPUG00000003960	-	75	58.768	ENSPANG00000030978	-	89	58.768	Papio_anubis
ENSIPUG00000003960	-	93	51.415	ENSPEMG00000016975	Zfp940	78	51.415	Peromyscus_maniculatus_bairdii
ENSIPUG00000003960	-	88	50.340	ENSPMEG00000004595	-	92	50.340	Poecilia_mexicana
ENSIPUG00000003960	-	91	58.411	ENSPPYG00000009906	-	70	58.411	Pongo_abelii
ENSIPUG00000003960	-	84	45.833	ENSPNYG00000024244	-	85	45.833	Pundamilia_nyererei
ENSIPUG00000003960	-	84	62.736	ENSPNAG00000019338	-	97	62.736	Pygocentrus_nattereri
ENSIPUG00000003960	-	75	61.650	ENSPNAG00000011625	-	81	61.650	Pygocentrus_nattereri
ENSIPUG00000003960	-	75	58.768	ENSSBOG00000029728	-	85	58.768	Saimiri_boliviensis_boliviensis
ENSIPUG00000003960	-	88	54.028	ENSSPUG00000010059	-	84	54.245	Sphenodon_punctatus