EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000004066 (Gene tree)
Gene ID: 108274096
Gene Symbol: SRSF2
Alias: hm:zeh0252|sfrs2|srsf2|wu:fb51a05|wu:fk59b08|zgc:56283
Full Name: serine and arginine rich splicing factor 2
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 2989 bases
Position: chr13:3882867-3885855
Accession: 108274096
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005833	RRM_1	PF00076.22	1e-21	1	1
ENSIPUP00000005838	RRM_1	PF00076.22	1e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006100	-	993	XM_017483960	ENSIPUP00000005833	220 (aa)	XP_017339449	W5UTC9
ENSIPUT00000006108	-	1041	XM_017483958	ENSIPUP00000005838	220 (aa)	XP_017339447	W5UTC9

Gene Model

Click here to download ENSIPUG00000004066's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG
ipu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004066's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004066	SRSF2	52	96.491	ENSAOCG00000021878	srsf2a	50	96.396	Amphiprion_ocellaris
ENSIPUG00000004066	SRSF2	52	96.491	ENSAPEG00000023494	srsf2a	50	96.396	Amphiprion_percula
ENSIPUG00000004066	SRSF2	54	97.458	ENSDARG00000057484	srsf2a	100	97.458	Danio_rerio
ENSIPUG00000004066	SRSF2	62	75.000	ENSDORG00000014460	Srsf2	51	91.346	Dipodomys_ordii
ENSIPUG00000004066	SRSF2	50	96.396	ENSGAFG00000005791	srsf2a	55	96.396	Gambusia_affinis
ENSIPUG00000004066	SRSF2	51	97.321	ENSKMAG00000009464	srsf2a	75	73.256	Kryptolebias_marmoratus
ENSIPUG00000004066	SRSF2	62	65.468	ENSLAFG00000007469	-	66	65.468	Loxodonta_africana
ENSIPUG00000004066	SRSF2	52	95.614	ENSOMEG00000007583	srsf2a	70	78.049	Oryzias_melastigma
ENSIPUG00000004066	SRSF2	67	60.811	ENSOARG00000018359	-	50	73.737	Ovis_aries
ENSIPUG00000004066	SRSF2	67	60.811	ENSOARG00000018667	-	50	73.737	Ovis_aries
ENSIPUG00000004066	SRSF2	73	75.776	ENSPMGG00000006860	-	60	97.000	Periophthalmus_magnuspinnatus
ENSIPUG00000004066	SRSF2	50	98.165	ENSPNAG00000010477	srsf2a	50	98.165	Pygocentrus_nattereri
ENSIPUG00000004066	SRSF2	75	78.049	ENSSFOG00015003975	-	55	94.355	Scleropages_formosus
ENSIPUG00000004066	SRSF2	69	64.968	ENSSSCG00000012212	-	51	76.000	Sus_scrofa
ENSIPUG00000004066	SRSF2	52	96.491	ENSXCOG00000005917	srsf2a	51	96.396	Xiphophorus_couchianus