EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000004067 (Gene tree)
Gene ID: 108256503
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 2223 bases
Position: chr23:767024-769246
Accession: 108256503
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005854	GTP_EFTU	PF00009.27	2.7e-53	1	1
ENSIPUP00000005854	GTP_EFTU_D2	PF03144.25	4.8e-11	1	1
ENSIPUP00000005854	GTP_EFTU_D3	PF03143.17	9e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006122	-	1396	XM_017453436	ENSIPUP00000005854	458 (aa)	XP_017308925	A0A2D0PUZ2

Gene Model

Click here to download ENSIPUG00000004067's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000004067	si:dkey-37o8.1	96	37.415	ENSIPUG00000011358	Gspt1	77	36.054
ENSIPUG00000004067	si:dkey-37o8.1	100	72.294	ENSIPUG00000023399	EEF1A1	100	72.294
ENSIPUG00000004067	si:dkey-37o8.1	95	38.356	ENSIPUG00000010748	hbs1l	63	38.462
ENSIPUG00000004067	si:dkey-37o8.1	96	30.649	ENSIPUG00000022457	tufm	87	30.649
ENSIPUG00000004067	si:dkey-37o8.1	100	72.078	ENSIPUG00000022421	eef1a1b	100	72.078
ENSIPUG00000004067	si:dkey-37o8.1	100	70.779	ENSIPUG00000019880	-	100	70.779
ENSIPUG00000004067	si:dkey-37o8.1	96	37.868	ENSIPUG00000001655	Gspt1	83	37.923
ENSIPUG00000004067	si:dkey-37o8.1	99	71.460	ENSIPUG00000008686	eef1a2	99	71.460

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004067	si:dkey-37o8.1	99	83.628	ENSAPOG00000016459	si:dkey-37o8.1	99	83.628	Acanthochromis_polyacanthus
ENSIPUG00000004067	si:dkey-37o8.1	95	80.778	ENSACIG00000020985	si:dkey-37o8.1	82	80.778	Amphilophus_citrinellus
ENSIPUG00000004067	si:dkey-37o8.1	100	83.843	ENSAOCG00000002663	si:dkey-37o8.1	100	83.843	Amphiprion_ocellaris
ENSIPUG00000004067	si:dkey-37o8.1	100	83.843	ENSAPEG00000012670	si:dkey-37o8.1	100	83.843	Amphiprion_percula
ENSIPUG00000004067	si:dkey-37o8.1	92	83.412	ENSATEG00000002217	si:dkey-37o8.1	99	83.412	Anabas_testudineus
ENSIPUG00000004067	si:dkey-37o8.1	100	82.314	ENSACLG00000003519	si:dkey-37o8.1	100	82.314	Astatotilapia_calliptera
ENSIPUG00000004067	si:dkey-37o8.1	100	93.013	ENSAMXG00000002728	si:dkey-37o8.1	100	93.013	Astyanax_mexicanus
ENSIPUG00000004067	si:dkey-37o8.1	99	73.304	ENSCPBG00000020570	-	90	73.465	Chrysemys_picta_bellii
ENSIPUG00000004067	si:dkey-37o8.1	100	78.043	ENSCSEG00000019807	si:dkey-37o8.1	100	77.204	Cynoglossus_semilaevis
ENSIPUG00000004067	si:dkey-37o8.1	99	83.297	ENSCVAG00000009828	si:dkey-37o8.1	99	83.297	Cyprinodon_variegatus
ENSIPUG00000004067	si:dkey-37o8.1	99	86.344	ENSDARG00000071727	si:dkey-37o8.1	94	86.344	Danio_rerio
ENSIPUG00000004067	si:dkey-37o8.1	100	83.624	ENSELUG00000007495	si:dkey-37o8.1	100	83.624	Esox_lucius
ENSIPUG00000004067	si:dkey-37o8.1	100	83.188	ENSFHEG00000017452	si:dkey-37o8.1	100	83.188	Fundulus_heteroclitus
ENSIPUG00000004067	si:dkey-37o8.1	99	76.703	ENSGMOG00000006122	si:dkey-37o8.1	100	76.703	Gadus_morhua
ENSIPUG00000004067	si:dkey-37o8.1	98	77.333	ENSGAFG00000000367	si:dkey-37o8.1	99	77.333	Gambusia_affinis
ENSIPUG00000004067	si:dkey-37o8.1	100	79.039	ENSGACG00000004505	si:dkey-37o8.1	100	79.039	Gasterosteus_aculeatus
ENSIPUG00000004067	si:dkey-37o8.1	99	74.561	ENSGAGG00000007724	-	97	78.846	Gopherus_agassizii
ENSIPUG00000004067	si:dkey-37o8.1	100	82.533	ENSHBUG00000015515	si:dkey-37o8.1	100	82.533	Haplochromis_burtoni
ENSIPUG00000004067	si:dkey-37o8.1	97	75.395	ENSHCOG00000001215	si:dkey-37o8.1	98	75.395	Hippocampus_comes
ENSIPUG00000004067	si:dkey-37o8.1	100	81.878	ENSKMAG00000015910	si:dkey-37o8.1	100	81.878	Kryptolebias_marmoratus
ENSIPUG00000004067	si:dkey-37o8.1	99	83.186	ENSLBEG00000021334	si:dkey-37o8.1	90	83.186	Labrus_bergylta
ENSIPUG00000004067	si:dkey-37o8.1	99	77.363	ENSLACG00000003948	si:dkey-37o8.1	99	77.363	Latimeria_chalumnae
ENSIPUG00000004067	si:dkey-37o8.1	100	82.135	ENSLOCG00000011245	si:dkey-37o8.1	100	82.135	Lepisosteus_oculatus
ENSIPUG00000004067	si:dkey-37o8.1	98	73.438	ENSMAMG00000009907	si:dkey-37o8.1	94	73.438	Mastacembelus_armatus
ENSIPUG00000004067	si:dkey-37o8.1	100	82.314	ENSMZEG00005018358	si:dkey-37o8.1	100	82.314	Maylandia_zebra
ENSIPUG00000004067	si:dkey-37o8.1	98	82.851	ENSMMOG00000004111	si:dkey-37o8.1	98	82.851	Mola_mola
ENSIPUG00000004067	si:dkey-37o8.1	95	77.626	ENSMALG00000017152	si:dkey-37o8.1	99	77.626	Monopterus_albus
ENSIPUG00000004067	si:dkey-37o8.1	100	81.878	ENSNBRG00000013552	si:dkey-37o8.1	100	81.878	Neolamprologus_brichardi
ENSIPUG00000004067	si:dkey-37o8.1	100	82.096	ENSONIG00000006165	si:dkey-37o8.1	100	82.096	Oreochromis_niloticus
ENSIPUG00000004067	si:dkey-37o8.1	100	83.188	ENSORLG00000019066	si:dkey-37o8.1	100	83.188	Oryzias_latipes
ENSIPUG00000004067	si:dkey-37o8.1	100	83.188	ENSORLG00020008094	si:dkey-37o8.1	100	83.188	Oryzias_latipes_hni
ENSIPUG00000004067	si:dkey-37o8.1	100	83.406	ENSORLG00015008410	si:dkey-37o8.1	100	83.406	Oryzias_latipes_hsok
ENSIPUG00000004067	si:dkey-37o8.1	99	84.581	ENSOMEG00000001868	si:dkey-37o8.1	99	84.581	Oryzias_melastigma
ENSIPUG00000004067	si:dkey-37o8.1	99	84.868	ENSPKIG00000017246	si:dkey-37o8.1	99	84.868	Paramormyrops_kingsleyae
ENSIPUG00000004067	si:dkey-37o8.1	60	67.845	ENSPSIG00000008080	-	99	67.845	Pelodiscus_sinensis
ENSIPUG00000004067	si:dkey-37o8.1	100	82.751	ENSPFOG00000013173	si:dkey-37o8.1	100	82.751	Poecilia_formosa
ENSIPUG00000004067	si:dkey-37o8.1	100	81.659	ENSPLAG00000010405	si:dkey-37o8.1	100	81.659	Poecilia_latipinna
ENSIPUG00000004067	si:dkey-37o8.1	100	82.751	ENSPMEG00000015233	si:dkey-37o8.1	100	82.751	Poecilia_mexicana
ENSIPUG00000004067	si:dkey-37o8.1	99	82.418	ENSPREG00000006280	si:dkey-37o8.1	100	82.418	Poecilia_reticulata
ENSIPUG00000004067	si:dkey-37o8.1	100	81.659	ENSPNYG00000002059	si:dkey-37o8.1	100	81.659	Pundamilia_nyererei
ENSIPUG00000004067	si:dkey-37o8.1	100	92.140	ENSPNAG00000009990	si:dkey-37o8.1	100	92.140	Pygocentrus_nattereri
ENSIPUG00000004067	si:dkey-37o8.1	99	83.664	ENSSFOG00015019070	si:dkey-37o8.1	99	83.664	Scleropages_formosus
ENSIPUG00000004067	si:dkey-37o8.1	100	82.969	ENSSMAG00000016143	si:dkey-37o8.1	100	82.969	Scophthalmus_maximus
ENSIPUG00000004067	si:dkey-37o8.1	100	82.969	ENSSDUG00000009163	si:dkey-37o8.1	100	82.969	Seriola_dumerili
ENSIPUG00000004067	si:dkey-37o8.1	100	83.188	ENSSLDG00000023761	si:dkey-37o8.1	100	83.188	Seriola_lalandi_dorsalis
ENSIPUG00000004067	si:dkey-37o8.1	98	72.727	ENSSPUG00000007467	-	98	72.727	Sphenodon_punctatus
ENSIPUG00000004067	si:dkey-37o8.1	100	84.279	ENSSPAG00000013856	si:dkey-37o8.1	100	84.279	Stegastes_partitus
ENSIPUG00000004067	si:dkey-37o8.1	96	85.000	ENSTRUG00000009006	si:dkey-37o8.1	98	85.000	Takifugu_rubripes
ENSIPUG00000004067	si:dkey-37o8.1	97	83.296	ENSTNIG00000017138	si:dkey-37o8.1	95	83.296	Tetraodon_nigroviridis
ENSIPUG00000004067	si:dkey-37o8.1	96	77.449	ENSXETG00000017744	42Sp50	99	75.930	Xenopus_tropicalis
ENSIPUG00000004067	si:dkey-37o8.1	99	82.198	ENSXCOG00000012296	si:dkey-37o8.1	98	85.714	Xiphophorus_couchianus
ENSIPUG00000004067	si:dkey-37o8.1	100	82.969	ENSXMAG00000001998	si:dkey-37o8.1	100	82.969	Xiphophorus_maculatus