EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000004117 (Gene tree)
Gene ID: 108257404
Gene Symbol: twistnb
Alias: -
Full Name: TWIST neighbor
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5641 bases
Position: chr24:14416695-14422335
Accession: 108257404
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000005921	SHS2_Rpb7-N	PF03876.17	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006190	-	2503	XM_017455147	ENSIPUP00000005921	362 (aa)	XP_017310636	A0A2D0PYW9

Gene Model

Click here to download ENSIPUG00000004117's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004117	twistnb	90	42.683	ENSG00000105849	TWISTNB	89	43.385	Homo_sapiens
ENSIPUG00000004117	twistnb	95	48.305	ENSAPOG00000011796	twistnb	92	48.159	Acanthochromis_polyacanthus
ENSIPUG00000004117	twistnb	99	47.632	ENSACIG00000020400	twistnb	98	46.950	Amphilophus_citrinellus
ENSIPUG00000004117	twistnb	95	48.305	ENSAOCG00000024200	twistnb	98	46.438	Amphiprion_ocellaris
ENSIPUG00000004117	twistnb	95	48.870	ENSAPEG00000016750	twistnb	98	46.966	Amphiprion_percula
ENSIPUG00000004117	twistnb	95	49.722	ENSATEG00000017956	twistnb	91	49.718	Anabas_testudineus
ENSIPUG00000004117	twistnb	90	40.964	ENSANAG00000026418	TWISTNB	93	42.560	Aotus_nancymaae
ENSIPUG00000004117	twistnb	95	49.859	ENSACLG00000022280	twistnb	92	48.670	Astatotilapia_calliptera
ENSIPUG00000004117	twistnb	82	57.000	ENSAMXG00000035868	twistnb	92	57.237	Astyanax_mexicanus
ENSIPUG00000004117	twistnb	55	53.465	ENSBTAG00000006721	TWISTNB	95	43.068	Bos_taurus
ENSIPUG00000004117	twistnb	90	44.109	ENSCJAG00000001148	TWISTNB	93	43.917	Callithrix_jacchus
ENSIPUG00000004117	twistnb	50	54.945	ENSCAFG00000002511	TWISTNB	94	39.104	Canis_familiaris
ENSIPUG00000004117	twistnb	50	54.945	ENSCAFG00020002140	TWISTNB	88	39.286	Canis_lupus_dingo
ENSIPUG00000004117	twistnb	91	42.308	ENSCHIG00000024078	TWISTNB	95	42.647	Capra_hircus
ENSIPUG00000004117	twistnb	89	43.252	ENSTSYG00000001471	TWISTNB	89	42.638	Carlito_syrichta
ENSIPUG00000004117	twistnb	56	53.659	ENSCPOG00000031651	TWISTNB	93	42.308	Cavia_porcellus
ENSIPUG00000004117	twistnb	50	56.593	ENSCCAG00000026416	TWISTNB	92	41.399	Cebus_capucinus
ENSIPUG00000004117	twistnb	90	42.683	ENSCATG00000035621	TWISTNB	90	43.293	Cercocebus_atys
ENSIPUG00000004117	twistnb	50	55.495	ENSCLAG00000012696	TWISTNB	93	41.916	Chinchilla_lanigera
ENSIPUG00000004117	twistnb	90	42.683	ENSCSAG00000013544	TWISTNB	89	43.385	Chlorocebus_sabaeus
ENSIPUG00000004117	twistnb	51	55.080	ENSCPBG00000000367	TWISTNB	62	53.299	Chrysemys_picta_bellii
ENSIPUG00000004117	twistnb	90	42.683	ENSCANG00000038759	TWISTNB	89	43.077	Colobus_angolensis_palliatus
ENSIPUG00000004117	twistnb	56	51.707	ENSCGRG00001000499	Twistnb	93	41.692	Cricetulus_griseus_chok1gshd
ENSIPUG00000004117	twistnb	56	58.454	ENSCVAG00000014324	twistnb	88	45.322	Cyprinodon_variegatus
ENSIPUG00000004117	twistnb	97	45.220	ENSDARG00000024416	twistnb	100	46.329	Danio_rerio
ENSIPUG00000004117	twistnb	59	49.767	ENSDNOG00000006438	-	93	42.012	Dasypus_novemcinctus
ENSIPUG00000004117	twistnb	73	43.956	ENSDORG00000007795	Twistnb	67	49.767	Dipodomys_ordii
ENSIPUG00000004117	twistnb	91	42.308	ENSEASG00005021702	TWISTNB	89	42.308	Equus_asinus_asinus
ENSIPUG00000004117	twistnb	50	56.044	ENSECAG00000014563	TWISTNB	89	42.308	Equus_caballus
ENSIPUG00000004117	twistnb	95	50.997	ENSELUG00000000098	TWISTNB	94	50.997	Esox_lucius
ENSIPUG00000004117	twistnb	92	40.698	ENSFCAG00000025987	TWISTNB	93	40.413	Felis_catus
ENSIPUG00000004117	twistnb	77	41.806	ENSFALG00000009761	TWISTNB	99	39.634	Ficedula_albicollis
ENSIPUG00000004117	twistnb	50	56.593	ENSFDAG00000017368	TWISTNB	93	42.398	Fukomys_damarensis
ENSIPUG00000004117	twistnb	55	60.396	ENSFHEG00000013318	twistnb	56	60.396	Fundulus_heteroclitus
ENSIPUG00000004117	twistnb	82	41.290	ENSGALG00000010863	TWISTNB	76	40.351	Gallus_gallus
ENSIPUG00000004117	twistnb	59	58.447	ENSGAFG00000018309	twistnb	99	45.067	Gambusia_affinis
ENSIPUG00000004117	twistnb	71	48.828	ENSGACG00000006425	twistnb	77	57.426	Gasterosteus_aculeatus
ENSIPUG00000004117	twistnb	93	42.183	ENSGGOG00000026888	TWISTNB	92	42.560	Gorilla_gorilla
ENSIPUG00000004117	twistnb	95	49.296	ENSHBUG00000020155	twistnb	92	48.138	Haplochromis_burtoni
ENSIPUG00000004117	twistnb	91	42.690	ENSHGLG00000010976	TWISTNB	93	41.194	Heterocephalus_glaber_female
ENSIPUG00000004117	twistnb	55	52.970	ENSHGLG00100005410	TWISTNB	93	41.194	Heterocephalus_glaber_male
ENSIPUG00000004117	twistnb	62	57.143	ENSHCOG00000010590	twistnb	56	57.143	Hippocampus_comes
ENSIPUG00000004117	twistnb	55	51.741	ENSSTOG00000022702	TWISTNB	91	39.189	Ictidomys_tridecemlineatus
ENSIPUG00000004117	twistnb	91	41.194	ENSJJAG00000015887	Twistnb	93	39.823	Jaculus_jaculus
ENSIPUG00000004117	twistnb	60	56.019	ENSKMAG00000001591	twistnb	67	51.406	Kryptolebias_marmoratus
ENSIPUG00000004117	twistnb	95	47.324	ENSLBEG00000024225	twistnb	98	45.789	Labrus_bergylta
ENSIPUG00000004117	twistnb	90	46.407	ENSLACG00000010508	TWISTNB	89	43.505	Latimeria_chalumnae
ENSIPUG00000004117	twistnb	74	53.731	ENSLOCG00000011399	twistnb	89	50.649	Lepisosteus_oculatus
ENSIPUG00000004117	twistnb	91	42.216	ENSLAFG00000008755	TWISTNB	93	42.515	Loxodonta_africana
ENSIPUG00000004117	twistnb	90	42.378	ENSMFAG00000045328	TWISTNB	89	43.077	Macaca_fascicularis
ENSIPUG00000004117	twistnb	91	41.840	ENSMMUG00000009609	TWISTNB	92	42.433	Macaca_mulatta
ENSIPUG00000004117	twistnb	88	42.188	ENSMNEG00000041159	TWISTNB	88	42.812	Macaca_nemestrina
ENSIPUG00000004117	twistnb	90	42.683	ENSMLEG00000042783	TWISTNB	89	43.385	Mandrillus_leucophaeus
ENSIPUG00000004117	twistnb	95	49.859	ENSMZEG00005007561	twistnb	92	48.670	Maylandia_zebra
ENSIPUG00000004117	twistnb	91	42.687	ENSMICG00000036489	TWISTNB	93	43.807	Microcebus_murinus
ENSIPUG00000004117	twistnb	55	52.764	ENSMOCG00000003458	Twistnb	65	52.607	Microtus_ochrogaster
ENSIPUG00000004117	twistnb	91	46.131	ENSMMOG00000020085	twistnb	93	43.836	Mola_mola
ENSIPUG00000004117	twistnb	95	45.405	ENSMALG00000016407	twistnb	92	46.027	Monopterus_albus
ENSIPUG00000004117	twistnb	55	51.741	MGP_CAROLIEiJ_G0017692	Twistnb	99	37.921	Mus_caroli
ENSIPUG00000004117	twistnb	55	51.244	ENSMUSG00000020561	Twistnb	61	51.244	Mus_musculus
ENSIPUG00000004117	twistnb	51	53.514	MGP_PahariEiJ_G0029450	Twistnb	62	51.471	Mus_pahari
ENSIPUG00000004117	twistnb	55	51.244	MGP_SPRETEiJ_G0018534	Twistnb	61	51.244	Mus_spretus
ENSIPUG00000004117	twistnb	91	40.118	ENSMPUG00000013948	TWISTNB	88	40.118	Mustela_putorius_furo
ENSIPUG00000004117	twistnb	95	49.573	ENSNBRG00000008652	twistnb	98	48.936	Neolamprologus_brichardi
ENSIPUG00000004117	twistnb	90	43.114	ENSNLEG00000035755	TWISTNB	92	44.012	Nomascus_leucogenys
ENSIPUG00000004117	twistnb	90	41.379	ENSOPRG00000016109	TWISTNB	93	41.867	Ochotona_princeps
ENSIPUG00000004117	twistnb	87	49.226	ENSORLG00000004005	twistnb	81	48.295	Oryzias_latipes
ENSIPUG00000004117	twistnb	87	48.012	ENSORLG00020002579	twistnb	90	47.472	Oryzias_latipes_hni
ENSIPUG00000004117	twistnb	85	49.201	ENSORLG00015013403	twistnb	80	45.404	Oryzias_latipes_hsok
ENSIPUG00000004117	twistnb	50	56.044	ENSOGAG00000009189	TWISTNB	89	43.865	Otolemur_garnettii
ENSIPUG00000004117	twistnb	91	42.442	ENSOARG00000009803	TWISTNB	93	43.235	Ovis_aries
ENSIPUG00000004117	twistnb	90	42.683	ENSPPAG00000034623	TWISTNB	89	44.172	Pan_paniscus
ENSIPUG00000004117	twistnb	92	39.823	ENSPPRG00000005877	TWISTNB	93	40.653	Panthera_pardus
ENSIPUG00000004117	twistnb	87	41.358	ENSPTIG00000021539	TWISTNB	99	40.373	Panthera_tigris_altaica
ENSIPUG00000004117	twistnb	90	42.988	ENSPTRG00000018962	TWISTNB	89	43.692	Pan_troglodytes
ENSIPUG00000004117	twistnb	90	42.683	ENSPANG00000015736	TWISTNB	90	43.293	Papio_anubis
ENSIPUG00000004117	twistnb	64	60.086	ENSPKIG00000025635	twistnb	65	58.607	Paramormyrops_kingsleyae
ENSIPUG00000004117	twistnb	95	46.591	ENSPMGG00000019023	twistnb	91	47.159	Periophthalmus_magnuspinnatus
ENSIPUG00000004117	twistnb	82	39.597	ENSPCIG00000017456	TWISTNB	51	53.571	Phascolarctos_cinereus
ENSIPUG00000004117	twistnb	90	41.768	ENSPPYG00000017752	TWISTNB	89	43.827	Pongo_abelii
ENSIPUG00000004117	twistnb	51	56.757	ENSPCOG00000017601	TWISTNB	93	43.582	Propithecus_coquereli
ENSIPUG00000004117	twistnb	95	50.141	ENSPNYG00000002674	twistnb	98	48.936	Pundamilia_nyererei
ENSIPUG00000004117	twistnb	95	61.449	ENSPNAG00000011956	twistnb	94	58.046	Pygocentrus_nattereri
ENSIPUG00000004117	twistnb	51	54.054	ENSRNOG00000010750	Twistnb	71	46.930	Rattus_norvegicus
ENSIPUG00000004117	twistnb	90	42.683	ENSRBIG00000043007	TWISTNB	88	43.077	Rhinopithecus_bieti
ENSIPUG00000004117	twistnb	90	42.683	ENSRROG00000040155	TWISTNB	89	43.077	Rhinopithecus_roxellana
ENSIPUG00000004117	twistnb	90	43.505	ENSSBOG00000023188	TWISTNB	93	41.228	Saimiri_boliviensis_boliviensis
ENSIPUG00000004117	twistnb	51	56.989	ENSSFOG00015012788	twistnb	62	55.612	Scleropages_formosus
ENSIPUG00000004117	twistnb	99	46.982	ENSSMAG00000012792	twistnb	98	47.769	Scophthalmus_maximus
ENSIPUG00000004117	twistnb	95	51.117	ENSSDUG00000007038	twistnb	98	50.000	Seriola_dumerili
ENSIPUG00000004117	twistnb	88	38.253	ENSSPUG00000007595	TWISTNB	59	53.039	Sphenodon_punctatus
ENSIPUG00000004117	twistnb	95	45.892	ENSSPAG00000005871	twistnb	98	43.651	Stegastes_partitus
ENSIPUG00000004117	twistnb	91	40.179	ENSSSCG00000025298	TWISTNB	93	42.560	Sus_scrofa
ENSIPUG00000004117	twistnb	87	47.619	ENSTNIG00000017778	twistnb	89	47.619	Tetraodon_nigroviridis
ENSIPUG00000004117	twistnb	89	44.136	ENSTBEG00000003554	TWISTNB	89	44.136	Tupaia_belangeri
ENSIPUG00000004117	twistnb	50	56.593	ENSUAMG00000017593	TWISTNB	93	42.308	Ursus_americanus
ENSIPUG00000004117	twistnb	50	56.593	ENSUMAG00000022203	TWISTNB	93	42.308	Ursus_maritimus
ENSIPUG00000004117	twistnb	50	55.495	ENSVVUG00000008386	TWISTNB	95	40.179	Vulpes_vulpes
ENSIPUG00000004117	twistnb	54	62.562	ENSXCOG00000020199	twistnb	57	62.562	Xiphophorus_couchianus