EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000004177 (Gene tree)
Gene ID: 100528953
Gene Symbol: srprb
Alias: -
Full Name: SRP receptor subunit beta
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5336 bases
Position: chr20:3753408-3758743
Accession: 100528953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000006061	MMR_HSR1	PF01926.23	3.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006334	-	1138	-	ENSIPUP00000006061	264 (aa)	-	-

Gene Model

Click here to download ENSIPUG00000004177's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004177's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000004177	srprb	53	30.216	ENSIPUG00000004215	arf5	69	30.370
ENSIPUG00000004177	srprb	53	30.216	ENSIPUG00000004159	Arf5	69	30.370
ENSIPUG00000004177	srprb	56	30.201	ENSIPUG00000020344	-	86	30.201
ENSIPUG00000004177	srprb	59	30.573	ENSIPUG00000020426	arl11	84	30.573
ENSIPUG00000004177	srprb	53	32.374	ENSIPUG00000007016	arf4	78	31.373
ENSIPUG00000004177	srprb	56	30.968	ENSIPUG00000006298	-	74	30.968

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004177	srprb	94	69.841	ENSAPOG00000021219	srprb	91	69.841	Acanthochromis_polyacanthus
ENSIPUG00000004177	srprb	94	68.651	ENSACIG00000014621	srprb	95	68.651	Amphilophus_citrinellus
ENSIPUG00000004177	srprb	94	68.254	ENSAOCG00000017265	srprb	91	68.254	Amphiprion_ocellaris
ENSIPUG00000004177	srprb	94	68.254	ENSAPEG00000024541	srprb	81	68.254	Amphiprion_percula
ENSIPUG00000004177	srprb	94	69.841	ENSATEG00000014016	srprb	92	69.841	Anabas_testudineus
ENSIPUG00000004177	srprb	94	69.565	ENSACLG00000016748	srprb	92	69.565	Astatotilapia_calliptera
ENSIPUG00000004177	srprb	100	76.030	ENSAMXG00000044118	srprb	100	76.030	Astyanax_mexicanus
ENSIPUG00000004177	srprb	100	65.543	ENSCSEG00000017194	srprb	97	65.543	Cynoglossus_semilaevis
ENSIPUG00000004177	srprb	100	66.667	ENSCVAG00000004221	srprb	100	66.667	Cyprinodon_variegatus
ENSIPUG00000004177	srprb	100	70.037	ENSDARG00000030949	srprb	100	70.037	Danio_rerio
ENSIPUG00000004177	srprb	94	68.127	ENSELUG00000009740	srprb	93	68.127	Esox_lucius
ENSIPUG00000004177	srprb	100	65.169	ENSFHEG00000006004	srprb	100	65.169	Fundulus_heteroclitus
ENSIPUG00000004177	srprb	94	65.873	ENSGMOG00000002081	srprb	93	65.873	Gadus_morhua
ENSIPUG00000004177	srprb	94	67.063	ENSGAFG00000012593	srprb	95	67.063	Gambusia_affinis
ENSIPUG00000004177	srprb	100	65.543	ENSGACG00000009891	srprb	98	65.543	Gasterosteus_aculeatus
ENSIPUG00000004177	srprb	94	69.565	ENSHBUG00000002145	srprb	92	69.565	Haplochromis_burtoni
ENSIPUG00000004177	srprb	98	67.045	ENSHCOG00000007732	srprb	99	67.045	Hippocampus_comes
ENSIPUG00000004177	srprb	94	66.932	ENSKMAG00000020736	srprb	94	66.932	Kryptolebias_marmoratus
ENSIPUG00000004177	srprb	100	66.667	ENSLBEG00000021483	srprb	97	66.667	Labrus_bergylta
ENSIPUG00000004177	srprb	99	62.921	ENSLOCG00000009740	srprb	89	63.296	Lepisosteus_oculatus
ENSIPUG00000004177	srprb	100	66.292	ENSMAMG00000011876	srprb	97	66.292	Mastacembelus_armatus
ENSIPUG00000004177	srprb	94	69.170	ENSMZEG00005016621	srprb	98	69.170	Maylandia_zebra
ENSIPUG00000004177	srprb	92	70.370	ENSMMOG00000012550	srprb	91	70.370	Mola_mola
ENSIPUG00000004177	srprb	100	65.543	ENSMALG00000012595	srprb	97	65.543	Monopterus_albus
ENSIPUG00000004177	srprb	69	68.306	ENSNBRG00000004699	srprb	78	68.306	Neolamprologus_brichardi
ENSIPUG00000004177	srprb	94	69.048	ENSONIG00000003788	srprb	75	69.048	Oreochromis_niloticus
ENSIPUG00000004177	srprb	100	64.964	ENSORLG00000006430	srprb	100	64.964	Oryzias_latipes
ENSIPUG00000004177	srprb	94	69.600	ENSORLG00020003413	srprb	91	69.600	Oryzias_latipes_hni
ENSIPUG00000004177	srprb	94	69.200	ENSORLG00015000166	srprb	91	69.200	Oryzias_latipes_hsok
ENSIPUG00000004177	srprb	94	67.460	ENSOMEG00000012735	srprb	92	67.460	Oryzias_melastigma
ENSIPUG00000004177	srprb	94	66.932	ENSPKIG00000013147	srprb	95	66.932	Paramormyrops_kingsleyae
ENSIPUG00000004177	srprb	94	65.476	ENSPMGG00000014061	srprb	92	65.476	Periophthalmus_magnuspinnatus
ENSIPUG00000004177	srprb	94	67.460	ENSPFOG00000011347	srprb	91	67.460	Poecilia_formosa
ENSIPUG00000004177	srprb	94	67.460	ENSPLAG00000001156	srprb	98	67.460	Poecilia_latipinna
ENSIPUG00000004177	srprb	94	67.063	ENSPMEG00000012169	srprb	98	67.063	Poecilia_mexicana
ENSIPUG00000004177	srprb	94	66.667	ENSPREG00000001449	srprb	98	66.667	Poecilia_reticulata
ENSIPUG00000004177	srprb	94	69.565	ENSPNYG00000005911	srprb	92	69.565	Pundamilia_nyererei
ENSIPUG00000004177	srprb	100	73.408	ENSPNAG00000009983	srprb	100	73.408	Pygocentrus_nattereri
ENSIPUG00000004177	srprb	94	67.589	ENSSFOG00015019355	srprb	96	66.279	Scleropages_formosus
ENSIPUG00000004177	srprb	100	64.794	ENSSMAG00000013202	srprb	97	64.794	Scophthalmus_maximus
ENSIPUG00000004177	srprb	94	67.857	ENSSDUG00000018746	srprb	86	67.857	Seriola_dumerili
ENSIPUG00000004177	srprb	94	68.651	ENSSLDG00000020560	srprb	92	68.651	Seriola_lalandi_dorsalis
ENSIPUG00000004177	srprb	94	70.238	ENSSPAG00000008898	srprb	91	70.238	Stegastes_partitus
ENSIPUG00000004177	srprb	100	63.670	ENSTRUG00000022463	srprb	97	64.419	Takifugu_rubripes
ENSIPUG00000004177	srprb	95	63.386	ENSTNIG00000007725	srprb	97	63.386	Tetraodon_nigroviridis
ENSIPUG00000004177	srprb	94	67.857	ENSXCOG00000012585	srprb	98	67.857	Xiphophorus_couchianus
ENSIPUG00000004177	srprb	94	67.460	ENSXMAG00000028725	srprb	98	67.460	Xiphophorus_maculatus