EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSIPUG00000004217 (Gene tree)
Gene ID: 108269805
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 8227 bases
Position: chr9:19511-27737
Accession: 108269805
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000006091	SMN	PF06003.12	4.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006364	-	979	XM_017475840	ENSIPUP00000006091	237 (aa)	XP_017331329	A0A2D0RLD7

Gene Model

Click here to download ENSIPUG00000004217's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004217	smndc1	100	77.731	ENSG00000119953	SMNDC1	100	77.731	Homo_sapiens
ENSIPUG00000004217	smndc1	100	84.874	ENSAPOG00000021772	smndc1	100	84.874	Acanthochromis_polyacanthus
ENSIPUG00000004217	smndc1	100	77.311	ENSAMEG00000005251	SMNDC1	100	77.311	Ailuropoda_melanoleuca
ENSIPUG00000004217	smndc1	100	84.034	ENSACIG00000004819	smndc1	100	84.034	Amphilophus_citrinellus
ENSIPUG00000004217	smndc1	100	84.034	ENSAOCG00000017869	smndc1	100	84.034	Amphiprion_ocellaris
ENSIPUG00000004217	smndc1	100	84.034	ENSAPEG00000007752	smndc1	100	84.034	Amphiprion_percula
ENSIPUG00000004217	smndc1	100	84.034	ENSATEG00000006830	smndc1	100	84.034	Anabas_testudineus
ENSIPUG00000004217	smndc1	83	78.788	ENSAPLG00000004322	SMNDC1	100	78.788	Anas_platyrhynchos
ENSIPUG00000004217	smndc1	100	78.151	ENSACAG00000005983	SMNDC1	100	78.151	Anolis_carolinensis
ENSIPUG00000004217	smndc1	100	77.311	ENSANAG00000032875	SMNDC1	100	77.311	Aotus_nancymaae
ENSIPUG00000004217	smndc1	100	83.613	ENSACLG00000016360	smndc1	100	83.613	Astatotilapia_calliptera
ENSIPUG00000004217	smndc1	100	87.342	ENSAMXG00000020310	smndc1	100	87.342	Astyanax_mexicanus
ENSIPUG00000004217	smndc1	100	76.891	ENSBTAG00000000551	SMNDC1	100	76.891	Bos_taurus
ENSIPUG00000004217	smndc1	100	77.311	ENSCJAG00000018624	SMNDC1	100	77.311	Callithrix_jacchus
ENSIPUG00000004217	smndc1	100	77.311	ENSCAFG00000010720	SMNDC1	100	77.311	Canis_familiaris
ENSIPUG00000004217	smndc1	100	77.311	ENSCAFG00020011913	SMNDC1	100	77.311	Canis_lupus_dingo
ENSIPUG00000004217	smndc1	100	76.891	ENSCHIG00000010604	SMNDC1	100	76.891	Capra_hircus
ENSIPUG00000004217	smndc1	100	77.731	ENSTSYG00000026454	SMNDC1	100	77.731	Carlito_syrichta
ENSIPUG00000004217	smndc1	100	63.750	ENSCAPG00000009132	SMNDC1	100	74.129	Cavia_aperea
ENSIPUG00000004217	smndc1	100	77.311	ENSCPOG00000031666	SMNDC1	100	77.311	Cavia_porcellus
ENSIPUG00000004217	smndc1	100	77.311	ENSCCAG00000021793	SMNDC1	100	77.311	Cebus_capucinus
ENSIPUG00000004217	smndc1	100	76.891	ENSCATG00000035910	SMNDC1	100	76.891	Cercocebus_atys
ENSIPUG00000004217	smndc1	100	77.311	ENSCLAG00000002838	SMNDC1	100	77.311	Chinchilla_lanigera
ENSIPUG00000004217	smndc1	100	77.311	ENSCSAG00000005169	SMNDC1	100	77.311	Chlorocebus_sabaeus
ENSIPUG00000004217	smndc1	81	72.539	ENSCHOG00000002936	SMNDC1	100	72.539	Choloepus_hoffmanni
ENSIPUG00000004217	smndc1	100	78.151	ENSCPBG00000012837	SMNDC1	100	78.151	Chrysemys_picta_bellii
ENSIPUG00000004217	smndc1	100	60.338	ENSCANG00000036994	-	100	60.338	Colobus_angolensis_palliatus
ENSIPUG00000004217	smndc1	100	77.311	ENSCANG00000031720	-	100	77.311	Colobus_angolensis_palliatus
ENSIPUG00000004217	smndc1	100	71.429	ENSCANG00000034620	-	100	71.429	Colobus_angolensis_palliatus
ENSIPUG00000004217	smndc1	100	76.891	ENSCGRG00001012973	Smndc1	100	76.891	Cricetulus_griseus_chok1gshd
ENSIPUG00000004217	smndc1	100	76.891	ENSCGRG00000012396	Smndc1	100	76.891	Cricetulus_griseus_crigri
ENSIPUG00000004217	smndc1	100	82.278	ENSCSEG00000015621	smndc1	100	82.278	Cynoglossus_semilaevis
ENSIPUG00000004217	smndc1	100	81.513	ENSCVAG00000020432	smndc1	100	81.513	Cyprinodon_variegatus
ENSIPUG00000004217	smndc1	100	85.654	ENSDARG00000056235	smndc1	100	85.654	Danio_rerio
ENSIPUG00000004217	smndc1	100	77.311	ENSDNOG00000016387	SMNDC1	83	77.311	Dasypus_novemcinctus
ENSIPUG00000004217	smndc1	100	77.311	ENSDORG00000023715	Smndc1	100	77.311	Dipodomys_ordii
ENSIPUG00000004217	smndc1	95	39.919	FBgn0039977	CG17454	98	41.532	Drosophila_melanogaster
ENSIPUG00000004217	smndc1	100	66.390	ENSEBUG00000010929	smndc1	100	68.050	Eptatretus_burgeri
ENSIPUG00000004217	smndc1	100	77.311	ENSEASG00005014930	SMNDC1	100	77.311	Equus_asinus_asinus
ENSIPUG00000004217	smndc1	100	77.311	ENSECAG00000029973	SMNDC1	100	77.311	Equus_caballus
ENSIPUG00000004217	smndc1	83	57.071	ENSEEUG00000013407	-	100	57.071	Erinaceus_europaeus
ENSIPUG00000004217	smndc1	100	86.076	ENSELUG00000000227	smndc1	100	86.076	Esox_lucius
ENSIPUG00000004217	smndc1	100	77.311	ENSFCAG00000027353	SMNDC1	100	77.311	Felis_catus
ENSIPUG00000004217	smndc1	100	78.571	ENSFALG00000002306	SMNDC1	100	78.571	Ficedula_albicollis
ENSIPUG00000004217	smndc1	100	77.731	ENSFDAG00000006468	SMNDC1	100	77.731	Fukomys_damarensis
ENSIPUG00000004217	smndc1	100	83.193	ENSFHEG00000020150	smndc1	100	83.193	Fundulus_heteroclitus
ENSIPUG00000004217	smndc1	100	83.122	ENSGMOG00000016585	smndc1	100	83.122	Gadus_morhua
ENSIPUG00000004217	smndc1	100	78.571	ENSGALG00000008561	SMNDC1	100	78.571	Gallus_gallus
ENSIPUG00000004217	smndc1	100	81.092	ENSGAFG00000011582	smndc1	100	81.092	Gambusia_affinis
ENSIPUG00000004217	smndc1	100	82.773	ENSGACG00000009468	smndc1	100	82.773	Gasterosteus_aculeatus
ENSIPUG00000004217	smndc1	100	78.151	ENSGAGG00000024547	SMNDC1	100	78.151	Gopherus_agassizii
ENSIPUG00000004217	smndc1	100	77.311	ENSGGOG00000010071	SMNDC1	100	77.311	Gorilla_gorilla
ENSIPUG00000004217	smndc1	100	83.613	ENSHBUG00000017596	smndc1	100	83.613	Haplochromis_burtoni
ENSIPUG00000004217	smndc1	100	77.731	ENSHGLG00000013390	-	100	77.731	Heterocephalus_glaber_female
ENSIPUG00000004217	smndc1	100	57.613	ENSHGLG00000001157	-	100	57.377	Heterocephalus_glaber_female
ENSIPUG00000004217	smndc1	100	61.475	ENSHGLG00100004278	-	100	60.484	Heterocephalus_glaber_male
ENSIPUG00000004217	smndc1	100	77.731	ENSHGLG00100004814	-	100	77.731	Heterocephalus_glaber_male
ENSIPUG00000004217	smndc1	100	79.079	ENSHCOG00000000783	smndc1	100	79.079	Hippocampus_comes
ENSIPUG00000004217	smndc1	100	77.731	ENSSTOG00000006088	SMNDC1	100	77.731	Ictidomys_tridecemlineatus
ENSIPUG00000004217	smndc1	100	76.891	ENSJJAG00000019974	Smndc1	100	76.891	Jaculus_jaculus
ENSIPUG00000004217	smndc1	100	81.092	ENSKMAG00000020134	smndc1	100	81.092	Kryptolebias_marmoratus
ENSIPUG00000004217	smndc1	100	80.591	ENSLBEG00000004598	smndc1	100	80.591	Labrus_bergylta
ENSIPUG00000004217	smndc1	100	76.891	ENSLACG00000007784	SMNDC1	100	76.891	Latimeria_chalumnae
ENSIPUG00000004217	smndc1	100	82.278	ENSLOCG00000012355	smndc1	100	82.278	Lepisosteus_oculatus
ENSIPUG00000004217	smndc1	100	77.311	ENSLAFG00000014353	SMNDC1	100	77.311	Loxodonta_africana
ENSIPUG00000004217	smndc1	100	64.557	ENSMFAG00000038381	-	100	64.557	Macaca_fascicularis
ENSIPUG00000004217	smndc1	100	77.311	ENSMFAG00000002433	-	100	77.311	Macaca_fascicularis
ENSIPUG00000004217	smndc1	100	77.311	ENSMMUG00000007775	SMNDC1	100	77.311	Macaca_mulatta
ENSIPUG00000004217	smndc1	100	64.557	ENSMMUG00000045875	-	100	64.557	Macaca_mulatta
ENSIPUG00000004217	smndc1	100	77.311	ENSMNEG00000042963	-	100	77.311	Macaca_nemestrina
ENSIPUG00000004217	smndc1	100	68.067	ENSMNEG00000033853	-	100	68.067	Macaca_nemestrina
ENSIPUG00000004217	smndc1	100	72.803	ENSMLEG00000040236	SMNDC1	100	72.385	Mandrillus_leucophaeus
ENSIPUG00000004217	smndc1	89	80.751	ENSMAMG00000018233	smndc1	87	80.751	Mastacembelus_armatus
ENSIPUG00000004217	smndc1	100	83.613	ENSMZEG00005027510	smndc1	100	83.613	Maylandia_zebra
ENSIPUG00000004217	smndc1	97	72.174	ENSMGAG00000010777	SMNDC1	97	72.174	Meleagris_gallopavo
ENSIPUG00000004217	smndc1	100	77.311	ENSMAUG00000012243	-	100	77.311	Mesocricetus_auratus
ENSIPUG00000004217	smndc1	99	62.288	ENSMAUG00000005459	-	93	63.713	Mesocricetus_auratus
ENSIPUG00000004217	smndc1	100	76.891	ENSMICG00000027336	-	100	76.891	Microcebus_murinus
ENSIPUG00000004217	smndc1	100	67.511	ENSMICG00000031640	-	100	67.511	Microcebus_murinus
ENSIPUG00000004217	smndc1	100	76.891	ENSMOCG00000002458	Smndc1	100	76.891	Microtus_ochrogaster
ENSIPUG00000004217	smndc1	100	81.513	ENSMMOG00000008856	smndc1	100	81.513	Mola_mola
ENSIPUG00000004217	smndc1	100	78.151	ENSMODG00000010542	SMNDC1	100	78.151	Monodelphis_domestica
ENSIPUG00000004217	smndc1	100	84.874	ENSMALG00000017598	smndc1	100	84.874	Monopterus_albus
ENSIPUG00000004217	smndc1	100	76.891	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.891	Mus_caroli
ENSIPUG00000004217	smndc1	100	77.311	ENSMUSG00000025024	Smndc1	100	77.311	Mus_musculus
ENSIPUG00000004217	smndc1	100	77.731	MGP_PahariEiJ_G0014560	Smndc1	100	77.731	Mus_pahari
ENSIPUG00000004217	smndc1	100	77.311	MGP_SPRETEiJ_G0023993	Smndc1	100	77.311	Mus_spretus
ENSIPUG00000004217	smndc1	100	77.311	ENSMPUG00000002089	SMNDC1	100	77.311	Mustela_putorius_furo
ENSIPUG00000004217	smndc1	100	77.731	ENSMLUG00000016007	SMNDC1	100	77.731	Myotis_lucifugus
ENSIPUG00000004217	smndc1	100	77.731	ENSNGAG00000006833	Smndc1	100	77.731	Nannospalax_galili
ENSIPUG00000004217	smndc1	100	84.034	ENSNBRG00000017089	smndc1	100	84.034	Neolamprologus_brichardi
ENSIPUG00000004217	smndc1	100	77.311	ENSNLEG00000015471	SMNDC1	100	77.311	Nomascus_leucogenys
ENSIPUG00000004217	smndc1	82	55.276	ENSMEUG00000010120	-	99	55.446	Notamacropus_eugenii
ENSIPUG00000004217	smndc1	100	77.311	ENSOPRG00000015348	SMNDC1	100	77.311	Ochotona_princeps
ENSIPUG00000004217	smndc1	100	56.540	ENSODEG00000007594	-	100	54.430	Octodon_degus
ENSIPUG00000004217	smndc1	100	84.034	ENSONIG00000000434	smndc1	100	84.034	Oreochromis_niloticus
ENSIPUG00000004217	smndc1	100	78.151	ENSOANG00000001598	SMNDC1	100	78.151	Ornithorhynchus_anatinus
ENSIPUG00000004217	smndc1	100	58.650	ENSOCUG00000012274	-	100	58.650	Oryctolagus_cuniculus
ENSIPUG00000004217	smndc1	100	76.471	ENSOCUG00000008145	-	100	76.471	Oryctolagus_cuniculus
ENSIPUG00000004217	smndc1	100	80.672	ENSORLG00000005934	smndc1	95	80.672	Oryzias_latipes
ENSIPUG00000004217	smndc1	100	80.672	ENSORLG00020008796	smndc1	95	80.672	Oryzias_latipes_hni
ENSIPUG00000004217	smndc1	100	80.252	ENSORLG00015013666	smndc1	100	80.252	Oryzias_latipes_hsok
ENSIPUG00000004217	smndc1	100	78.903	ENSOMEG00000007590	smndc1	100	78.903	Oryzias_melastigma
ENSIPUG00000004217	smndc1	100	76.891	ENSOGAG00000000571	SMNDC1	100	76.891	Otolemur_garnettii
ENSIPUG00000004217	smndc1	100	76.891	ENSOARG00000009500	SMNDC1	100	76.891	Ovis_aries
ENSIPUG00000004217	smndc1	100	77.311	ENSPPAG00000027815	SMNDC1	100	77.311	Pan_paniscus
ENSIPUG00000004217	smndc1	100	77.311	ENSPPRG00000013749	SMNDC1	100	77.311	Panthera_pardus
ENSIPUG00000004217	smndc1	100	77.311	ENSPTIG00000011451	SMNDC1	100	77.311	Panthera_tigris_altaica
ENSIPUG00000004217	smndc1	100	77.311	ENSPTRG00000002937	SMNDC1	100	77.311	Pan_troglodytes
ENSIPUG00000004217	smndc1	100	73.840	ENSPANG00000031346	-	100	73.840	Papio_anubis
ENSIPUG00000004217	smndc1	100	77.311	ENSPANG00000020805	-	100	77.311	Papio_anubis
ENSIPUG00000004217	smndc1	100	79.325	ENSPKIG00000017164	smndc1	100	80.753	Paramormyrops_kingsleyae
ENSIPUG00000004217	smndc1	100	78.571	ENSPSIG00000012257	SMNDC1	100	78.571	Pelodiscus_sinensis
ENSIPUG00000004217	smndc1	100	79.325	ENSPMGG00000015651	smndc1	100	79.325	Periophthalmus_magnuspinnatus
ENSIPUG00000004217	smndc1	100	77.311	ENSPEMG00000022058	Smndc1	100	77.311	Peromyscus_maniculatus_bairdii
ENSIPUG00000004217	smndc1	100	65.984	ENSPMAG00000007705	smndc1	100	65.984	Petromyzon_marinus
ENSIPUG00000004217	smndc1	100	78.151	ENSPCIG00000018419	SMNDC1	100	78.151	Phascolarctos_cinereus
ENSIPUG00000004217	smndc1	95	58.667	ENSPCIG00000009693	-	98	58.667	Phascolarctos_cinereus
ENSIPUG00000004217	smndc1	100	81.933	ENSPFOG00000017113	smndc1	100	81.933	Poecilia_formosa
ENSIPUG00000004217	smndc1	100	81.092	ENSPLAG00000010372	smndc1	100	81.092	Poecilia_latipinna
ENSIPUG00000004217	smndc1	100	82.773	ENSPMEG00000012288	smndc1	100	82.773	Poecilia_mexicana
ENSIPUG00000004217	smndc1	100	81.513	ENSPREG00000012279	smndc1	100	81.513	Poecilia_reticulata
ENSIPUG00000004217	smndc1	100	77.311	ENSPPYG00000002643	SMNDC1	100	77.311	Pongo_abelii
ENSIPUG00000004217	smndc1	81	74.093	ENSPCAG00000016183	SMNDC1	100	74.093	Procavia_capensis
ENSIPUG00000004217	smndc1	100	77.311	ENSPCOG00000024343	SMNDC1	100	77.311	Propithecus_coquereli
ENSIPUG00000004217	smndc1	100	61.345	ENSPVAG00000004368	SMNDC1	100	61.345	Pteropus_vampyrus
ENSIPUG00000004217	smndc1	83	82.828	ENSPNYG00000024093	smndc1	86	82.828	Pundamilia_nyererei
ENSIPUG00000004217	smndc1	100	88.186	ENSPNAG00000025285	smndc1	100	88.186	Pygocentrus_nattereri
ENSIPUG00000004217	smndc1	100	76.891	ENSRNOG00000014833	Smndc1	100	76.891	Rattus_norvegicus
ENSIPUG00000004217	smndc1	100	76.891	ENSRBIG00000000224	-	100	76.891	Rhinopithecus_bieti
ENSIPUG00000004217	smndc1	100	63.291	ENSRBIG00000032452	-	100	63.291	Rhinopithecus_bieti
ENSIPUG00000004217	smndc1	100	77.311	ENSRROG00000044992	-	100	77.311	Rhinopithecus_roxellana
ENSIPUG00000004217	smndc1	100	63.713	ENSRROG00000039125	-	100	63.713	Rhinopithecus_roxellana
ENSIPUG00000004217	smndc1	100	77.311	ENSSBOG00000026789	SMNDC1	100	77.311	Saimiri_boliviensis_boliviensis
ENSIPUG00000004217	smndc1	100	78.151	ENSSHAG00000015189	SMNDC1	100	78.151	Sarcophilus_harrisii
ENSIPUG00000004217	smndc1	100	80.169	ENSSFOG00015008311	smndc1	100	80.169	Scleropages_formosus
ENSIPUG00000004217	smndc1	100	84.874	ENSSMAG00000020118	smndc1	100	84.874	Scophthalmus_maximus
ENSIPUG00000004217	smndc1	100	86.555	ENSSDUG00000015330	smndc1	100	86.555	Seriola_dumerili
ENSIPUG00000004217	smndc1	100	86.134	ENSSLDG00000017325	smndc1	100	86.134	Seriola_lalandi_dorsalis
ENSIPUG00000004217	smndc1	100	77.311	ENSSARG00000006063	SMNDC1	100	77.311	Sorex_araneus
ENSIPUG00000004217	smndc1	100	78.992	ENSSPUG00000004574	SMNDC1	100	78.992	Sphenodon_punctatus
ENSIPUG00000004217	smndc1	100	83.193	ENSSPAG00000000338	smndc1	100	83.193	Stegastes_partitus
ENSIPUG00000004217	smndc1	100	77.731	ENSSSCG00000030507	SMNDC1	100	77.731	Sus_scrofa
ENSIPUG00000004217	smndc1	100	78.571	ENSTGUG00000010599	SMNDC1	100	78.571	Taeniopygia_guttata
ENSIPUG00000004217	smndc1	100	78.992	ENSTRUG00000023281	smndc1	100	78.992	Takifugu_rubripes
ENSIPUG00000004217	smndc1	100	78.992	ENSTNIG00000013331	smndc1	100	78.992	Tetraodon_nigroviridis
ENSIPUG00000004217	smndc1	100	76.891	ENSTBEG00000014337	SMNDC1	100	76.891	Tupaia_belangeri
ENSIPUG00000004217	smndc1	100	77.311	ENSUAMG00000008142	SMNDC1	100	77.311	Ursus_americanus
ENSIPUG00000004217	smndc1	100	77.311	ENSUMAG00000023722	SMNDC1	100	77.311	Ursus_maritimus
ENSIPUG00000004217	smndc1	83	78.283	ENSVPAG00000003402	SMNDC1	100	78.283	Vicugna_pacos
ENSIPUG00000004217	smndc1	100	77.311	ENSVVUG00000007820	SMNDC1	100	77.311	Vulpes_vulpes
ENSIPUG00000004217	smndc1	59	61.972	ENSXETG00000015415	SMNDC1	100	61.972	Xenopus_tropicalis
ENSIPUG00000004217	smndc1	100	81.435	ENSXCOG00000009159	smndc1	100	81.435	Xiphophorus_couchianus
ENSIPUG00000004217	smndc1	100	81.092	ENSXMAG00000012755	smndc1	100	81.092	Xiphophorus_maculatus