EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Orthologs
Description
Ensembl ID
ENSIPUG00000004400 (Gene tree)
Gene ID
108277964
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
64248 bases
Position
chr17:15527689-15591936
Accession
108277964
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000006391tRNA_anti-codonPF01336.251.1e-1311
ENSIPUP00000006413tRNA_anti-codonPF01336.251.1e-1311
ENSIPUP00000006478tRNA_anti-codonPF01336.251.1e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000006765-1829XM_017491051ENSIPUP00000006478606 (aa)XP_017346540W5U9I7
ENSIPUT00000006676-3225XM_017491052ENSIPUP00000006391606 (aa)XP_017346541W5U9I7
ENSIPUT00000006698-2914-ENSIPUP00000006413606 (aa)-W5U9I7
Gene Model
Click here to download ENSIPUG00000004400's gene model file
Pathways
Pathway IDPathway NameSource
ipu03030DNA replicationKEGG
ipu03420Nucleotide excision repairKEGG
ipu03430Mismatch repairKEGG
ipu03440Homologous recombinationKEGG
ipu03460Fanconi anemia pathwayKEGG
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000004400rpa19976.119ENSAPOG00000011658rpa19976.119Acanthochromis_polyacanthus
ENSIPUG00000004400rpa19970.370ENSAPOG00000019409RPA19070.370Acanthochromis_polyacanthus
ENSIPUG00000004400rpa19762.396ENSAMEG00000007706RPA19762.396Ailuropoda_melanoleuca
ENSIPUG00000004400rpa19563.373ENSACIG00000012881RPA19963.373Amphilophus_citrinellus
ENSIPUG00000004400rpa19669.983ENSACIG00000007277rpa19969.983Amphilophus_citrinellus
ENSIPUG00000004400rpa19961.171ENSAOCG00000009003RPA110061.633Amphiprion_ocellaris
ENSIPUG00000004400rpa19976.159ENSAOCG00000023376rpa19976.159Amphiprion_ocellaris
ENSIPUG00000004400rpa19976.325ENSAPEG00000008634rpa19976.325Amphiprion_percula
ENSIPUG00000004400rpa19959.187ENSAPEG00000019132RPA110059.187Amphiprion_percula
ENSIPUG00000004400rpa19576.348ENSATEG00000022024rpa19976.348Anabas_testudineus
ENSIPUG00000004400rpa19959.754ENSATEG00000006443RPA110059.754Anabas_testudineus
ENSIPUG00000004400rpa19853.304ENSAPLG00000012442RPA110053.010Anas_platyrhynchos
ENSIPUG00000004400rpa19956.311ENSACAG00000014490RPA19956.311Anolis_carolinensis
ENSIPUG00000004400rpa19663.193ENSANAG00000023456RPA19863.193Aotus_nancymaae
ENSIPUG00000004400rpa19477.289ENSACLG00000006640rpa19977.289Astatotilapia_calliptera
ENSIPUG00000004400rpa19962.441ENSACLG00000005223RPA19962.441Astatotilapia_calliptera
ENSIPUG00000004400rpa19988.138ENSAMXG00000008418rpa19988.468Astyanax_mexicanus
ENSIPUG00000004400rpa19962.036ENSBTAG00000009711RPA19962.036Bos_taurus
ENSIPUG00000004400rpa19961.426ENSCJAG00000001848RPA19961.774Callithrix_jacchus
ENSIPUG00000004400rpa19961.463ENSCAFG00000019249RPA19961.789Canis_familiaris
ENSIPUG00000004400rpa19961.463ENSCAFG00020009847RPA19961.789Canis_lupus_dingo
ENSIPUG00000004400rpa19961.851ENSCHIG00000026308RPA19961.874Capra_hircus
ENSIPUG00000004400rpa19963.089ENSTSYG00000003482-9963.089Carlito_syrichta
ENSIPUG00000004400rpa19962.136ENSCPOG00000000035RPA19962.136Cavia_porcellus
ENSIPUG00000004400rpa19952.026ENSCCAG00000010981RPA19952.581Cebus_capucinus
ENSIPUG00000004400rpa19961.974ENSCLAG00000005185-10061.974Chinchilla_lanigera
ENSIPUG00000004400rpa19958.509ENSCLAG00000015045-9958.509Chinchilla_lanigera
ENSIPUG00000004400rpa19952.922ENSCSAG00000013833RPA19952.922Chlorocebus_sabaeus
ENSIPUG00000004400rpa19561.224ENSCHOG00000013540-9961.158Choloepus_hoffmanni
ENSIPUG00000004400rpa17268.879ENSCHOG00000009454-9968.650Choloepus_hoffmanni
ENSIPUG00000004400rpa19961.401ENSCPBG00000020377RPA19962.105Chrysemys_picta_bellii
ENSIPUG00000004400rpa19943.842ENSCING00000023482-9943.842Ciona_intestinalis
ENSIPUG00000004400rpa19761.953ENSCANG00000030911RPA19961.953Colobus_angolensis_palliatus
ENSIPUG00000004400rpa19962.298ENSCGRG00001008197Rpa19962.136Cricetulus_griseus_chok1gshd
ENSIPUG00000004400rpa18163.708ENSCGRG00000000582Rpa19963.511Cricetulus_griseus_crigri
ENSIPUG00000004400rpa19972.442ENSCSEG00000013066rpa19972.442Cynoglossus_semilaevis
ENSIPUG00000004400rpa110056.369ENSCSEG00000012726RPA19857.858Cynoglossus_semilaevis
ENSIPUG00000004400rpa19658.204ENSCVAG00000013446-9658.204Cyprinodon_variegatus
ENSIPUG00000004400rpa19975.748ENSCVAG00000019431rpa19975.748Cyprinodon_variegatus
ENSIPUG00000004400rpa19981.878ENSDARG00000003938rpa19981.878Danio_rerio
ENSIPUG00000004400rpa19962.664ENSDNOG00000017218RPA19962.664Dasypus_novemcinctus
ENSIPUG00000004400rpa19962.927ENSDORG00000006199Rpa19962.927Dipodomys_ordii
ENSIPUG00000004400rpa19941.544FBgn0010173RpA-709842.036Drosophila_melanogaster
ENSIPUG00000004400rpa18369.072ENSETEG00000017608RPA18269.072Echinops_telfairi
ENSIPUG00000004400rpa19762.647ENSEASG00005009372RPA19962.609Equus_asinus_asinus
ENSIPUG00000004400rpa19962.500ENSECAG00000023886RPA19962.500Equus_caballus
ENSIPUG00000004400rpa16969.212ENSEEUG00000002186-6869.212Erinaceus_europaeus
ENSIPUG00000004400rpa19976.471ENSELUG00000021071rpa19976.471Esox_lucius
ENSIPUG00000004400rpa18861.940ENSELUG00000006136RPA19961.940Esox_lucius
ENSIPUG00000004400rpa19962.338ENSFCAG00000006306RPA19962.338Felis_catus
ENSIPUG00000004400rpa19962.258ENSFALG00000006575RPA19962.258Ficedula_albicollis
ENSIPUG00000004400rpa19962.602ENSFDAG00000007720RPA19962.439Fukomys_damarensis
ENSIPUG00000004400rpa19974.135ENSFHEG00000003580rpa19974.135Fundulus_heteroclitus
ENSIPUG00000004400rpa19972.968ENSGMOG00000010382rpa19972.968Gadus_morhua
ENSIPUG00000004400rpa19961.327ENSGALG00000003072RPA19961.165Gallus_gallus
ENSIPUG00000004400rpa19959.604ENSGAFG00000020953RPA19959.422Gambusia_affinis
ENSIPUG00000004400rpa19975.124ENSGAFG00000012916rpa19975.124Gambusia_affinis
ENSIPUG00000004400rpa19975.702ENSGACG00000010856rpa19975.702Gasterosteus_aculeatus
ENSIPUG00000004400rpa19961.075ENSGAGG00000013611RPA19961.075Gopherus_agassizii
ENSIPUG00000004400rpa19961.412ENSGGOG00000014186RPA19961.412Gorilla_gorilla
ENSIPUG00000004400rpa19557.725ENSHBUG00000009348RPA19857.725Haplochromis_burtoni
ENSIPUG00000004400rpa19978.182ENSHBUG00000017773rpa19978.182Haplochromis_burtoni
ENSIPUG00000004400rpa19962.114ENSHGLG00000008846RPA110062.114Heterocephalus_glaber_female
ENSIPUG00000004400rpa19958.699ENSHGLG00100000799-9958.699Heterocephalus_glaber_male
ENSIPUG00000004400rpa19962.114ENSHGLG00100017755-10062.114Heterocephalus_glaber_male
ENSIPUG00000004400rpa19953.094ENSHGLG00100002005-9953.094Heterocephalus_glaber_male
ENSIPUG00000004400rpa110045.514ENSHCOG00000000351RPA19945.188Hippocampus_comes
ENSIPUG00000004400rpa19969.821ENSHCOG00000001401rpa19970.473Hippocampus_comes
ENSIPUG00000004400rpa19260.590ENSSTOG00000022475RPA19561.121Ictidomys_tridecemlineatus
ENSIPUG00000004400rpa19663.621ENSJJAG00000000876Rpa19863.621Jaculus_jaculus
ENSIPUG00000004400rpa19972.204ENSKMAG00000005605rpa19972.204Kryptolebias_marmoratus
ENSIPUG00000004400rpa19961.741ENSKMAG00000000234RPA19961.741Kryptolebias_marmoratus
ENSIPUG00000004400rpa19975.205ENSLBEG00000021604rpa19975.082Labrus_bergylta
ENSIPUG00000004400rpa19669.300ENSLBEG00000002281RPA18669.144Labrus_bergylta
ENSIPUG00000004400rpa17860.494ENSLACG00000007210RPA19860.288Latimeria_chalumnae
ENSIPUG00000004400rpa110070.588ENSLOCG00000006397rpa110070.588Lepisosteus_oculatus
ENSIPUG00000004400rpa19960.835ENSLAFG00000015354RPA19960.835Loxodonta_africana
ENSIPUG00000004400rpa18160.636ENSMFAG00000036138-9960.437Macaca_fascicularis
ENSIPUG00000004400rpa19957.492ENSMMUG00000002442-9957.329Macaca_mulatta
ENSIPUG00000004400rpa19961.678ENSMMUG00000011604-9961.730Macaca_mulatta
ENSIPUG00000004400rpa19960.488ENSMNEG00000031632-9960.325Macaca_nemestrina
ENSIPUG00000004400rpa18762.882ENSMNEG00000029837-9762.664Macaca_nemestrina
ENSIPUG00000004400rpa19859.038ENSMLEG00000038768-9958.872Mandrillus_leucophaeus
ENSIPUG00000004400rpa19977.152ENSMAMG00000017993rpa19977.152Mastacembelus_armatus
ENSIPUG00000004400rpa19970.465ENSMAMG00000020097RPA19369.526Mastacembelus_armatus
ENSIPUG00000004400rpa19962.441ENSMZEG00005024731RPA19962.441Maylandia_zebra
ENSIPUG00000004400rpa19978.182ENSMZEG00005007551rpa19978.182Maylandia_zebra
ENSIPUG00000004400rpa19960.556ENSMGAG00000005315RPA19860.393Meleagris_gallopavo
ENSIPUG00000004400rpa19762.833ENSMAUG00000010474Rpa19963.000Mesocricetus_auratus
ENSIPUG00000004400rpa19962.013ENSMICG00000012867RPA19962.500Microcebus_murinus
ENSIPUG00000004400rpa19962.276ENSMOCG00000013019Rpa19962.276Microtus_ochrogaster
ENSIPUG00000004400rpa19864.034ENSMMOG00000010868RPA19864.034Mola_mola
ENSIPUG00000004400rpa19974.129ENSMMOG00000014292rpa19975.856Mola_mola
ENSIPUG00000004400rpa19962.439ENSMODG00000010549RPA19962.439Monodelphis_domestica
ENSIPUG00000004400rpa19968.243ENSMALG00000001208RPA18868.243Monopterus_albus
ENSIPUG00000004400rpa19977.114ENSMALG00000011453rpa19977.114Monopterus_albus
ENSIPUG00000004400rpa19962.075MGP_CAROLIEiJ_G0016734Rpa19962.723Mus_caroli
ENSIPUG00000004400rpa19962.600ENSMUSG00000000751Rpa19962.440Mus_musculus
ENSIPUG00000004400rpa19962.419MGP_PahariEiJ_G0017871Rpa19962.581Mus_pahari
ENSIPUG00000004400rpa19962.660MGP_SPRETEiJ_G0017577Rpa19962.500Mus_spretus
ENSIPUG00000004400rpa19961.789ENSMPUG00000013119RPA19961.750Mustela_putorius_furo
ENSIPUG00000004400rpa19961.254ENSMLUG00000006113RPA19961.254Myotis_lucifugus
ENSIPUG00000004400rpa19562.606ENSNGAG00000004522Rpa19462.437Nannospalax_galili
ENSIPUG00000004400rpa19860.132ENSNBRG00000009672RPA19760.132Neolamprologus_brichardi
ENSIPUG00000004400rpa19577.043ENSNBRG00000020595rpa19977.043Neolamprologus_brichardi
ENSIPUG00000004400rpa19962.987ENSNLEG00000017149RPA19962.987Nomascus_leucogenys
ENSIPUG00000004400rpa19854.319ENSMEUG00000006714RPA19954.319Notamacropus_eugenii
ENSIPUG00000004400rpa19662.040ENSODEG00000009038RPA19762.040Octodon_degus
ENSIPUG00000004400rpa19977.147ENSONIG00000013135rpa19977.147Oreochromis_niloticus
ENSIPUG00000004400rpa19862.625ENSOANG00000010880RPA19962.458Ornithorhynchus_anatinus
ENSIPUG00000004400rpa19959.845ENSOCUG00000001504RPA19959.845Oryctolagus_cuniculus
ENSIPUG00000004400rpa19958.410ENSORLG00000003368RPA19958.410Oryzias_latipes
ENSIPUG00000004400rpa19975.249ENSORLG00000004856rpa19975.249Oryzias_latipes
ENSIPUG00000004400rpa19975.249ENSORLG00020008980rpa19975.249Oryzias_latipes_hni
ENSIPUG00000004400rpa19956.907ENSORLG00020015284RPA19956.907Oryzias_latipes_hni
ENSIPUG00000004400rpa19975.249ENSORLG00015013982rpa19975.249Oryzias_latipes_hsok
ENSIPUG00000004400rpa17364.027ENSORLG00015005867-9864.027Oryzias_latipes_hsok
ENSIPUG00000004400rpa19958.879ENSORLG00015020383RPA19958.879Oryzias_latipes_hsok
ENSIPUG00000004400rpa19972.591ENSOMEG00000004704rpa19972.591Oryzias_melastigma
ENSIPUG00000004400rpa19559.408ENSOMEG00000011040RPA110059.408Oryzias_melastigma
ENSIPUG00000004400rpa17671.978ENSOGAG00000029379-9772.571Otolemur_garnettii
ENSIPUG00000004400rpa19962.662ENSOGAG00000005581-9962.662Otolemur_garnettii
ENSIPUG00000004400rpa19961.851ENSOARG00000014479RPA19961.874Ovis_aries
ENSIPUG00000004400rpa19963.107ENSPPAG00000039680RPA19963.269Pan_paniscus
ENSIPUG00000004400rpa19962.013ENSPPRG00000011807RPA19962.013Panthera_pardus
ENSIPUG00000004400rpa19962.013ENSPTIG00000007898RPA19962.013Panthera_tigris_altaica
ENSIPUG00000004400rpa19962.662ENSPTRG00000008539RPA19962.825Pan_troglodytes
ENSIPUG00000004400rpa19961.851ENSPANG00000024592RPA19961.688Papio_anubis
ENSIPUG00000004400rpa19975.534ENSPKIG00000008053rpa19976.026Paramormyrops_kingsleyae
ENSIPUG00000004400rpa19860.399ENSPSIG00000015617RPA19960.399Pelodiscus_sinensis
ENSIPUG00000004400rpa19973.798ENSPMGG00000011589rpa19973.798Periophthalmus_magnuspinnatus
ENSIPUG00000004400rpa110059.157ENSPMGG00000000543RPA19963.055Periophthalmus_magnuspinnatus
ENSIPUG00000004400rpa19962.114ENSPEMG00000021061Rpa19962.114Peromyscus_maniculatus_bairdii
ENSIPUG00000004400rpa19962.764ENSPCIG00000019049RPA19962.764Phascolarctos_cinereus
ENSIPUG00000004400rpa19975.124ENSPFOG00000003987rpa19975.124Poecilia_formosa
ENSIPUG00000004400rpa19975.124ENSPLAG00000004984rpa19975.124Poecilia_latipinna
ENSIPUG00000004400rpa19459.259ENSPLAG00000008844-9759.259Poecilia_latipinna
ENSIPUG00000004400rpa19459.547ENSPMEG00000003627-9759.098Poecilia_mexicana
ENSIPUG00000004400rpa19975.290ENSPMEG00000020602rpa19975.290Poecilia_mexicana
ENSIPUG00000004400rpa19466.667ENSPREG00000010174rpa19666.667Poecilia_reticulata
ENSIPUG00000004400rpa19970.938ENSPREG00000010119RPA110056.454Poecilia_reticulata
ENSIPUG00000004400rpa19962.036ENSPCOG00000001799RPA19962.036Propithecus_coquereli
ENSIPUG00000004400rpa19961.789ENSPVAG00000002149RPA19961.789Pteropus_vampyrus
ENSIPUG00000004400rpa19978.347ENSPNYG00000016316rpa19978.347Pundamilia_nyererei
ENSIPUG00000004400rpa19962.285ENSPNYG00000024165RPA19962.598Pundamilia_nyererei
ENSIPUG00000004400rpa19980.268ENSPNAG00000008599rpa19781.067Pygocentrus_nattereri
ENSIPUG00000004400rpa19767.150ENSRNOG00000003123Rpa19963.089Rattus_norvegicus
ENSIPUG00000004400rpa19961.851ENSRBIG00000036587RPA19961.851Rhinopithecus_bieti
ENSIPUG00000004400rpa19957.630ENSRROG00000043278RPA19957.468Rhinopithecus_roxellana
ENSIPUG00000004400rpa19731.518YAR007CRFA19731.311Saccharomyces_cerevisiae
ENSIPUG00000004400rpa19162.278ENSSBOG00000030233RPA19762.655Saimiri_boliviensis_boliviensis
ENSIPUG00000004400rpa19962.459ENSSHAG00000007969RPA19863.011Sarcophilus_harrisii
ENSIPUG00000004400rpa19979.441ENSSFOG00015005362rpa19279.276Scleropages_formosus
ENSIPUG00000004400rpa19959.304ENSSMAG00000019746RPA110059.304Scophthalmus_maximus
ENSIPUG00000004400rpa19977.980ENSSDUG00000011949rpa19977.980Seriola_dumerili
ENSIPUG00000004400rpa19966.598ENSSDUG00000016358RPA19866.598Seriola_dumerili
ENSIPUG00000004400rpa19966.597ENSSLDG00000020784RPA19766.597Seriola_lalandi_dorsalis
ENSIPUG00000004400rpa19977.980ENSSLDG00000011806rpa19977.980Seriola_lalandi_dorsalis
ENSIPUG00000004400rpa18769.697ENSSARG00000007506RPA18869.697Sorex_araneus
ENSIPUG00000004400rpa19659.729ENSSPUG00000007223RPA19859.729Sphenodon_punctatus
ENSIPUG00000004400rpa19863.697ENSSPAG00000011165RPA19863.697Stegastes_partitus
ENSIPUG00000004400rpa19976.617ENSSPAG00000009903rpa19976.617Stegastes_partitus
ENSIPUG00000004400rpa19961.967ENSSSCG00000017822RPA19962.748Sus_scrofa
ENSIPUG00000004400rpa19961.165ENSTGUG00000005775RPA19961.165Taeniopygia_guttata
ENSIPUG00000004400rpa19569.484ENSTRUG00000000405RPA18269.124Takifugu_rubripes
ENSIPUG00000004400rpa19973.790ENSTRUG00000003616rpa19973.790Takifugu_rubripes
ENSIPUG00000004400rpa19974.836ENSTNIG00000016199rpa19974.836Tetraodon_nigroviridis
ENSIPUG00000004400rpa17969.545ENSTBEG00000002709RPA18069.545Tupaia_belangeri
ENSIPUG00000004400rpa19961.650ENSTTRG00000001169RPA19961.836Tursiops_truncatus
ENSIPUG00000004400rpa19663.830ENSUAMG00000015676RPA19672.549Ursus_americanus
ENSIPUG00000004400rpa19961.526ENSUMAG00000009328RPA19961.951Ursus_maritimus
ENSIPUG00000004400rpa19961.349ENSVPAG00000009443RPA19961.349Vicugna_pacos
ENSIPUG00000004400rpa19961.626ENSVVUG00000021715RPA19961.951Vulpes_vulpes
ENSIPUG00000004400rpa19963.754ENSXETG00000013538rpa19965.008Xenopus_tropicalis
ENSIPUG00000004400rpa19561.179ENSXCOG00000009899-9961.352Xiphophorus_couchianus
ENSIPUG00000004400rpa19374.113ENSXCOG00000010068rpa19474.113Xiphophorus_couchianus
ENSIPUG00000004400rpa19974.627ENSXMAG00000004102rpa19975.532Xiphophorus_maculatus
ENSIPUG00000004400rpa19370.481ENSXMAG00000010333RPA18670.481Xiphophorus_maculatus

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