EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSIPUG00000004400 (Gene tree)
Gene ID
108277964
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
64248 bases
Position
chr17:15527689-15591936
Accession
108277964
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000006391tRNA_anti-codonPF01336.251.1e-1311
ENSIPUP00000006413tRNA_anti-codonPF01336.251.1e-1311
ENSIPUP00000006478tRNA_anti-codonPF01336.251.1e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000006765-1829XM_017491051ENSIPUP00000006478606 (aa)XP_017346540W5U9I7
ENSIPUT00000006676-3225XM_017491052ENSIPUP00000006391606 (aa)XP_017346541W5U9I7
ENSIPUT00000006698-2914-ENSIPUP00000006413606 (aa)-W5U9I7
Gene Model
Click here to download ENSIPUG00000004400's gene model file
Pathways
Pathway IDPathway NameSource
ipu03030DNA replicationKEGG
ipu03420Nucleotide excision repairKEGG
ipu03430Mismatch repairKEGG
ipu03440Homologous recombinationKEGG
ipu03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004400's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000004400rpa19976.119ENSAPOG00000011658rpa19976.119Acanthochromis_polyacanthus
ENSIPUG00000004400rpa19970.370ENSAPOG00000019409RPA19070.370Acanthochromis_polyacanthus
ENSIPUG00000004400rpa19762.396ENSAMEG00000007706RPA19762.396Ailuropoda_melanoleuca
ENSIPUG00000004400rpa19563.373ENSACIG00000012881RPA19963.373Amphilophus_citrinellus
ENSIPUG00000004400rpa19669.983ENSACIG00000007277rpa19969.983Amphilophus_citrinellus
ENSIPUG00000004400rpa19961.171ENSAOCG00000009003RPA110061.633Amphiprion_ocellaris
ENSIPUG00000004400rpa19976.159ENSAOCG00000023376rpa19976.159Amphiprion_ocellaris
ENSIPUG00000004400rpa19976.325ENSAPEG00000008634rpa19976.325Amphiprion_percula
ENSIPUG00000004400rpa19959.187ENSAPEG00000019132RPA110059.187Amphiprion_percula
ENSIPUG00000004400rpa19576.348ENSATEG00000022024rpa19976.348Anabas_testudineus
ENSIPUG00000004400rpa19959.754ENSATEG00000006443RPA110059.754Anabas_testudineus
ENSIPUG00000004400rpa19853.304ENSAPLG00000012442RPA110053.010Anas_platyrhynchos
ENSIPUG00000004400rpa19956.311ENSACAG00000014490RPA19956.311Anolis_carolinensis
ENSIPUG00000004400rpa19663.193ENSANAG00000023456RPA19863.193Aotus_nancymaae
ENSIPUG00000004400rpa19477.289ENSACLG00000006640rpa19977.289Astatotilapia_calliptera
ENSIPUG00000004400rpa19962.441ENSACLG00000005223RPA19962.441Astatotilapia_calliptera
ENSIPUG00000004400rpa19988.138ENSAMXG00000008418rpa19988.468Astyanax_mexicanus
ENSIPUG00000004400rpa19962.036ENSBTAG00000009711RPA19962.036Bos_taurus
ENSIPUG00000004400rpa19961.426ENSCJAG00000001848RPA19961.774Callithrix_jacchus
ENSIPUG00000004400rpa19961.463ENSCAFG00000019249RPA19961.789Canis_familiaris
ENSIPUG00000004400rpa19961.463ENSCAFG00020009847RPA19961.789Canis_lupus_dingo
ENSIPUG00000004400rpa19961.851ENSCHIG00000026308RPA19961.874Capra_hircus
ENSIPUG00000004400rpa19963.089ENSTSYG00000003482-9963.089Carlito_syrichta
ENSIPUG00000004400rpa19962.136ENSCPOG00000000035RPA19962.136Cavia_porcellus
ENSIPUG00000004400rpa19952.026ENSCCAG00000010981RPA19952.581Cebus_capucinus
ENSIPUG00000004400rpa19961.974ENSCLAG00000005185-10061.974Chinchilla_lanigera
ENSIPUG00000004400rpa19958.509ENSCLAG00000015045-9958.509Chinchilla_lanigera
ENSIPUG00000004400rpa19952.922ENSCSAG00000013833RPA19952.922Chlorocebus_sabaeus
ENSIPUG00000004400rpa19561.224ENSCHOG00000013540-9961.158Choloepus_hoffmanni
ENSIPUG00000004400rpa17268.879ENSCHOG00000009454-9968.650Choloepus_hoffmanni
ENSIPUG00000004400rpa19961.401ENSCPBG00000020377RPA19962.105Chrysemys_picta_bellii
ENSIPUG00000004400rpa19943.842ENSCING00000023482-9943.842Ciona_intestinalis
ENSIPUG00000004400rpa19761.953ENSCANG00000030911RPA19961.953Colobus_angolensis_palliatus
ENSIPUG00000004400rpa19962.298ENSCGRG00001008197Rpa19962.136Cricetulus_griseus_chok1gshd
ENSIPUG00000004400rpa18163.708ENSCGRG00000000582Rpa19963.511Cricetulus_griseus_crigri
ENSIPUG00000004400rpa19972.442ENSCSEG00000013066rpa19972.442Cynoglossus_semilaevis
ENSIPUG00000004400rpa110056.369ENSCSEG00000012726RPA19857.858Cynoglossus_semilaevis
ENSIPUG00000004400rpa19658.204ENSCVAG00000013446-9658.204Cyprinodon_variegatus
ENSIPUG00000004400rpa19975.748ENSCVAG00000019431rpa19975.748Cyprinodon_variegatus
ENSIPUG00000004400rpa19981.878ENSDARG00000003938rpa19981.878Danio_rerio
ENSIPUG00000004400rpa19962.664ENSDNOG00000017218RPA19962.664Dasypus_novemcinctus
ENSIPUG00000004400rpa19962.927ENSDORG00000006199Rpa19962.927Dipodomys_ordii
ENSIPUG00000004400rpa19941.544FBgn0010173RpA-709842.036Drosophila_melanogaster
ENSIPUG00000004400rpa18369.072ENSETEG00000017608RPA18269.072Echinops_telfairi
ENSIPUG00000004400rpa19762.647ENSEASG00005009372RPA19962.609Equus_asinus_asinus
ENSIPUG00000004400rpa19962.500ENSECAG00000023886RPA19962.500Equus_caballus
ENSIPUG00000004400rpa16969.212ENSEEUG00000002186-6869.212Erinaceus_europaeus
ENSIPUG00000004400rpa19976.471ENSELUG00000021071rpa19976.471Esox_lucius
ENSIPUG00000004400rpa18861.940ENSELUG00000006136RPA19961.940Esox_lucius
ENSIPUG00000004400rpa19962.338ENSFCAG00000006306RPA19962.338Felis_catus
ENSIPUG00000004400rpa19962.258ENSFALG00000006575RPA19962.258Ficedula_albicollis
ENSIPUG00000004400rpa19962.602ENSFDAG00000007720RPA19962.439Fukomys_damarensis
ENSIPUG00000004400rpa19974.135ENSFHEG00000003580rpa19974.135Fundulus_heteroclitus
ENSIPUG00000004400rpa19972.968ENSGMOG00000010382rpa19972.968Gadus_morhua
ENSIPUG00000004400rpa19961.327ENSGALG00000003072RPA19961.165Gallus_gallus
ENSIPUG00000004400rpa19959.604ENSGAFG00000020953RPA19959.422Gambusia_affinis
ENSIPUG00000004400rpa19975.124ENSGAFG00000012916rpa19975.124Gambusia_affinis
ENSIPUG00000004400rpa19975.702ENSGACG00000010856rpa19975.702Gasterosteus_aculeatus
ENSIPUG00000004400rpa19961.075ENSGAGG00000013611RPA19961.075Gopherus_agassizii
ENSIPUG00000004400rpa19961.412ENSGGOG00000014186RPA19961.412Gorilla_gorilla
ENSIPUG00000004400rpa19557.725ENSHBUG00000009348RPA19857.725Haplochromis_burtoni
ENSIPUG00000004400rpa19978.182ENSHBUG00000017773rpa19978.182Haplochromis_burtoni
ENSIPUG00000004400rpa19962.114ENSHGLG00000008846RPA110062.114Heterocephalus_glaber_female
ENSIPUG00000004400rpa19958.699ENSHGLG00100000799-9958.699Heterocephalus_glaber_male
ENSIPUG00000004400rpa19962.114ENSHGLG00100017755-10062.114Heterocephalus_glaber_male
ENSIPUG00000004400rpa19953.094ENSHGLG00100002005-9953.094Heterocephalus_glaber_male
ENSIPUG00000004400rpa110045.514ENSHCOG00000000351RPA19945.188Hippocampus_comes
ENSIPUG00000004400rpa19969.821ENSHCOG00000001401rpa19970.473Hippocampus_comes
ENSIPUG00000004400rpa19260.590ENSSTOG00000022475RPA19561.121Ictidomys_tridecemlineatus
ENSIPUG00000004400rpa19663.621ENSJJAG00000000876Rpa19863.621Jaculus_jaculus
ENSIPUG00000004400rpa19972.204ENSKMAG00000005605rpa19972.204Kryptolebias_marmoratus
ENSIPUG00000004400rpa19961.741ENSKMAG00000000234RPA19961.741Kryptolebias_marmoratus
ENSIPUG00000004400rpa19975.205ENSLBEG00000021604rpa19975.082Labrus_bergylta
ENSIPUG00000004400rpa19669.300ENSLBEG00000002281RPA18669.144Labrus_bergylta
ENSIPUG00000004400rpa17860.494ENSLACG00000007210RPA19860.288Latimeria_chalumnae
ENSIPUG00000004400rpa110070.588ENSLOCG00000006397rpa110070.588Lepisosteus_oculatus
ENSIPUG00000004400rpa19960.835ENSLAFG00000015354RPA19960.835Loxodonta_africana
ENSIPUG00000004400rpa18160.636ENSMFAG00000036138-9960.437Macaca_fascicularis
ENSIPUG00000004400rpa19957.492ENSMMUG00000002442-9957.329Macaca_mulatta
ENSIPUG00000004400rpa19961.678ENSMMUG00000011604-9961.730Macaca_mulatta
ENSIPUG00000004400rpa19960.488ENSMNEG00000031632-9960.325Macaca_nemestrina
ENSIPUG00000004400rpa18762.882ENSMNEG00000029837-9762.664Macaca_nemestrina
ENSIPUG00000004400rpa19859.038ENSMLEG00000038768-9958.872Mandrillus_leucophaeus
ENSIPUG00000004400rpa19977.152ENSMAMG00000017993rpa19977.152Mastacembelus_armatus
ENSIPUG00000004400rpa19970.465ENSMAMG00000020097RPA19369.526Mastacembelus_armatus
ENSIPUG00000004400rpa19962.441ENSMZEG00005024731RPA19962.441Maylandia_zebra
ENSIPUG00000004400rpa19978.182ENSMZEG00005007551rpa19978.182Maylandia_zebra
ENSIPUG00000004400rpa19960.556ENSMGAG00000005315RPA19860.393Meleagris_gallopavo
ENSIPUG00000004400rpa19762.833ENSMAUG00000010474Rpa19963.000Mesocricetus_auratus
ENSIPUG00000004400rpa19962.013ENSMICG00000012867RPA19962.500Microcebus_murinus
ENSIPUG00000004400rpa19962.276ENSMOCG00000013019Rpa19962.276Microtus_ochrogaster
ENSIPUG00000004400rpa19864.034ENSMMOG00000010868RPA19864.034Mola_mola
ENSIPUG00000004400rpa19974.129ENSMMOG00000014292rpa19975.856Mola_mola
ENSIPUG00000004400rpa19962.439ENSMODG00000010549RPA19962.439Monodelphis_domestica
ENSIPUG00000004400rpa19968.243ENSMALG00000001208RPA18868.243Monopterus_albus
ENSIPUG00000004400rpa19977.114ENSMALG00000011453rpa19977.114Monopterus_albus
ENSIPUG00000004400rpa19962.075MGP_CAROLIEiJ_G0016734Rpa19962.723Mus_caroli
ENSIPUG00000004400rpa19962.600ENSMUSG00000000751Rpa19962.440Mus_musculus
ENSIPUG00000004400rpa19962.419MGP_PahariEiJ_G0017871Rpa19962.581Mus_pahari
ENSIPUG00000004400rpa19962.660MGP_SPRETEiJ_G0017577Rpa19962.500Mus_spretus
ENSIPUG00000004400rpa19961.789ENSMPUG00000013119RPA19961.750Mustela_putorius_furo
ENSIPUG00000004400rpa19961.254ENSMLUG00000006113RPA19961.254Myotis_lucifugus
ENSIPUG00000004400rpa19562.606ENSNGAG00000004522Rpa19462.437Nannospalax_galili
ENSIPUG00000004400rpa19860.132ENSNBRG00000009672RPA19760.132Neolamprologus_brichardi
ENSIPUG00000004400rpa19577.043ENSNBRG00000020595rpa19977.043Neolamprologus_brichardi
ENSIPUG00000004400rpa19962.987ENSNLEG00000017149RPA19962.987Nomascus_leucogenys
ENSIPUG00000004400rpa19854.319ENSMEUG00000006714RPA19954.319Notamacropus_eugenii
ENSIPUG00000004400rpa19662.040ENSODEG00000009038RPA19762.040Octodon_degus
ENSIPUG00000004400rpa19977.147ENSONIG00000013135rpa19977.147Oreochromis_niloticus
ENSIPUG00000004400rpa19862.625ENSOANG00000010880RPA19962.458Ornithorhynchus_anatinus
ENSIPUG00000004400rpa19959.845ENSOCUG00000001504RPA19959.845Oryctolagus_cuniculus
ENSIPUG00000004400rpa19958.410ENSORLG00000003368RPA19958.410Oryzias_latipes
ENSIPUG00000004400rpa19975.249ENSORLG00000004856rpa19975.249Oryzias_latipes
ENSIPUG00000004400rpa19975.249ENSORLG00020008980rpa19975.249Oryzias_latipes_hni
ENSIPUG00000004400rpa19956.907ENSORLG00020015284RPA19956.907Oryzias_latipes_hni
ENSIPUG00000004400rpa19975.249ENSORLG00015013982rpa19975.249Oryzias_latipes_hsok
ENSIPUG00000004400rpa17364.027ENSORLG00015005867-9864.027Oryzias_latipes_hsok
ENSIPUG00000004400rpa19958.879ENSORLG00015020383RPA19958.879Oryzias_latipes_hsok
ENSIPUG00000004400rpa19972.591ENSOMEG00000004704rpa19972.591Oryzias_melastigma
ENSIPUG00000004400rpa19559.408ENSOMEG00000011040RPA110059.408Oryzias_melastigma
ENSIPUG00000004400rpa17671.978ENSOGAG00000029379-9772.571Otolemur_garnettii
ENSIPUG00000004400rpa19962.662ENSOGAG00000005581-9962.662Otolemur_garnettii
ENSIPUG00000004400rpa19961.851ENSOARG00000014479RPA19961.874Ovis_aries
ENSIPUG00000004400rpa19963.107ENSPPAG00000039680RPA19963.269Pan_paniscus
ENSIPUG00000004400rpa19962.013ENSPPRG00000011807RPA19962.013Panthera_pardus
ENSIPUG00000004400rpa19962.013ENSPTIG00000007898RPA19962.013Panthera_tigris_altaica
ENSIPUG00000004400rpa19962.662ENSPTRG00000008539RPA19962.825Pan_troglodytes
ENSIPUG00000004400rpa19961.851ENSPANG00000024592RPA19961.688Papio_anubis
ENSIPUG00000004400rpa19975.534ENSPKIG00000008053rpa19976.026Paramormyrops_kingsleyae
ENSIPUG00000004400rpa19860.399ENSPSIG00000015617RPA19960.399Pelodiscus_sinensis
ENSIPUG00000004400rpa19973.798ENSPMGG00000011589rpa19973.798Periophthalmus_magnuspinnatus
ENSIPUG00000004400rpa110059.157ENSPMGG00000000543RPA19963.055Periophthalmus_magnuspinnatus
ENSIPUG00000004400rpa19962.114ENSPEMG00000021061Rpa19962.114Peromyscus_maniculatus_bairdii
ENSIPUG00000004400rpa19962.764ENSPCIG00000019049RPA19962.764Phascolarctos_cinereus
ENSIPUG00000004400rpa19975.124ENSPFOG00000003987rpa19975.124Poecilia_formosa
ENSIPUG00000004400rpa19975.124ENSPLAG00000004984rpa19975.124Poecilia_latipinna
ENSIPUG00000004400rpa19459.259ENSPLAG00000008844-9759.259Poecilia_latipinna
ENSIPUG00000004400rpa19459.547ENSPMEG00000003627-9759.098Poecilia_mexicana
ENSIPUG00000004400rpa19975.290ENSPMEG00000020602rpa19975.290Poecilia_mexicana
ENSIPUG00000004400rpa19466.667ENSPREG00000010174rpa19666.667Poecilia_reticulata
ENSIPUG00000004400rpa19970.938ENSPREG00000010119RPA110056.454Poecilia_reticulata
ENSIPUG00000004400rpa19962.036ENSPCOG00000001799RPA19962.036Propithecus_coquereli
ENSIPUG00000004400rpa19961.789ENSPVAG00000002149RPA19961.789Pteropus_vampyrus
ENSIPUG00000004400rpa19978.347ENSPNYG00000016316rpa19978.347Pundamilia_nyererei
ENSIPUG00000004400rpa19962.285ENSPNYG00000024165RPA19962.598Pundamilia_nyererei
ENSIPUG00000004400rpa19980.268ENSPNAG00000008599rpa19781.067Pygocentrus_nattereri
ENSIPUG00000004400rpa19767.150ENSRNOG00000003123Rpa19963.089Rattus_norvegicus
ENSIPUG00000004400rpa19961.851ENSRBIG00000036587RPA19961.851Rhinopithecus_bieti
ENSIPUG00000004400rpa19957.630ENSRROG00000043278RPA19957.468Rhinopithecus_roxellana
ENSIPUG00000004400rpa19731.518YAR007CRFA19731.311Saccharomyces_cerevisiae
ENSIPUG00000004400rpa19162.278ENSSBOG00000030233RPA19762.655Saimiri_boliviensis_boliviensis
ENSIPUG00000004400rpa19962.459ENSSHAG00000007969RPA19863.011Sarcophilus_harrisii
ENSIPUG00000004400rpa19979.441ENSSFOG00015005362rpa19279.276Scleropages_formosus
ENSIPUG00000004400rpa19959.304ENSSMAG00000019746RPA110059.304Scophthalmus_maximus
ENSIPUG00000004400rpa19977.980ENSSDUG00000011949rpa19977.980Seriola_dumerili
ENSIPUG00000004400rpa19966.598ENSSDUG00000016358RPA19866.598Seriola_dumerili
ENSIPUG00000004400rpa19966.597ENSSLDG00000020784RPA19766.597Seriola_lalandi_dorsalis
ENSIPUG00000004400rpa19977.980ENSSLDG00000011806rpa19977.980Seriola_lalandi_dorsalis
ENSIPUG00000004400rpa18769.697ENSSARG00000007506RPA18869.697Sorex_araneus
ENSIPUG00000004400rpa19659.729ENSSPUG00000007223RPA19859.729Sphenodon_punctatus
ENSIPUG00000004400rpa19863.697ENSSPAG00000011165RPA19863.697Stegastes_partitus
ENSIPUG00000004400rpa19976.617ENSSPAG00000009903rpa19976.617Stegastes_partitus
ENSIPUG00000004400rpa19961.967ENSSSCG00000017822RPA19962.748Sus_scrofa
ENSIPUG00000004400rpa19961.165ENSTGUG00000005775RPA19961.165Taeniopygia_guttata
ENSIPUG00000004400rpa19569.484ENSTRUG00000000405RPA18269.124Takifugu_rubripes
ENSIPUG00000004400rpa19973.790ENSTRUG00000003616rpa19973.790Takifugu_rubripes
ENSIPUG00000004400rpa19974.836ENSTNIG00000016199rpa19974.836Tetraodon_nigroviridis
ENSIPUG00000004400rpa17969.545ENSTBEG00000002709RPA18069.545Tupaia_belangeri
ENSIPUG00000004400rpa19961.650ENSTTRG00000001169RPA19961.836Tursiops_truncatus
ENSIPUG00000004400rpa19663.830ENSUAMG00000015676RPA19672.549Ursus_americanus
ENSIPUG00000004400rpa19961.526ENSUMAG00000009328RPA19961.951Ursus_maritimus
ENSIPUG00000004400rpa19961.349ENSVPAG00000009443RPA19961.349Vicugna_pacos
ENSIPUG00000004400rpa19961.626ENSVVUG00000021715RPA19961.951Vulpes_vulpes
ENSIPUG00000004400rpa19963.754ENSXETG00000013538rpa19965.008Xenopus_tropicalis
ENSIPUG00000004400rpa19561.179ENSXCOG00000009899-9961.352Xiphophorus_couchianus
ENSIPUG00000004400rpa19374.113ENSXCOG00000010068rpa19474.113Xiphophorus_couchianus
ENSIPUG00000004400rpa19974.627ENSXMAG00000004102rpa19975.532Xiphophorus_maculatus
ENSIPUG00000004400rpa19370.481ENSXMAG00000010333RPA18670.481Xiphophorus_maculatus

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