EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSIPUG00000004508 (Gene tree)
Gene ID: 108262696
Gene Symbol: lsm6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Ictalurus_punctatus
Status: putative
Strand: Minus strand
Length: 5560 bases
Position: chr3:5224465-5230024
Accession: 108262696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSIPUP00000006504	LSM	PF01423.22	7.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSIPUT00000006792	-	1261	XM_017463014	ENSIPUP00000006504	80 (aa)	XP_017318503	A0A2D0QJA6

Gene Model

Click here to download ENSIPUG00000004508's gene model file

Pathways

Pathway ID	Pathway Name	Source
ipu03018	RNA degradation	KEGG
ipu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSIPUG00000004508	lsm6	83	50.000	ENSIPUG00000018994	snrpf	78	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSIPUG00000004508	lsm6	100	95.000	ENSG00000164167	LSM6	100	95.000	Homo_sapiens
ENSIPUG00000004508	lsm6	100	96.250	ENSAPOG00000019832	lsm6	100	96.250	Acanthochromis_polyacanthus
ENSIPUG00000004508	lsm6	100	95.000	ENSAMEG00000016671	LSM6	100	95.000	Ailuropoda_melanoleuca
ENSIPUG00000004508	lsm6	100	96.250	ENSACIG00000016711	lsm6	100	96.250	Amphilophus_citrinellus
ENSIPUG00000004508	lsm6	100	96.250	ENSAOCG00000002110	lsm6	52	96.250	Amphiprion_ocellaris
ENSIPUG00000004508	lsm6	100	96.250	ENSAPEG00000023992	lsm6	100	96.250	Amphiprion_percula
ENSIPUG00000004508	lsm6	100	96.250	ENSATEG00000012610	lsm6	100	96.250	Anabas_testudineus
ENSIPUG00000004508	lsm6	96	96.104	ENSAPLG00000012594	LSM6	99	96.104	Anas_platyrhynchos
ENSIPUG00000004508	lsm6	100	95.000	ENSACAG00000004004	LSM6	100	95.000	Anolis_carolinensis
ENSIPUG00000004508	lsm6	100	95.000	ENSANAG00000030568	-	100	95.000	Aotus_nancymaae
ENSIPUG00000004508	lsm6	100	82.500	ENSANAG00000021839	-	100	82.500	Aotus_nancymaae
ENSIPUG00000004508	lsm6	100	96.250	ENSACLG00000025621	lsm6	100	96.250	Astatotilapia_calliptera
ENSIPUG00000004508	lsm6	100	98.750	ENSAMXG00000038738	lsm6	100	98.750	Astyanax_mexicanus
ENSIPUG00000004508	lsm6	100	88.750	ENSBTAG00000052085	-	100	88.750	Bos_taurus
ENSIPUG00000004508	lsm6	100	95.000	ENSBTAG00000014060	LSM6	100	95.000	Bos_taurus
ENSIPUG00000004508	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSIPUG00000004508	lsm6	100	95.000	ENSCJAG00000002482	LSM6	100	95.000	Callithrix_jacchus
ENSIPUG00000004508	lsm6	100	95.000	ENSCAFG00000007738	LSM6	100	95.000	Canis_familiaris
ENSIPUG00000004508	lsm6	100	95.000	ENSCAFG00020025902	LSM6	100	95.000	Canis_lupus_dingo
ENSIPUG00000004508	lsm6	89	95.775	ENSCHIG00000012864	-	100	95.775	Capra_hircus
ENSIPUG00000004508	lsm6	100	95.000	ENSCHIG00000010334	-	100	95.000	Capra_hircus
ENSIPUG00000004508	lsm6	100	80.000	ENSCHIG00000024198	-	95	80.000	Capra_hircus
ENSIPUG00000004508	lsm6	100	95.000	ENSTSYG00000026972	LSM6	100	95.000	Carlito_syrichta
ENSIPUG00000004508	lsm6	80	89.062	ENSTSYG00000012759	-	84	89.062	Carlito_syrichta
ENSIPUG00000004508	lsm6	81	92.308	ENSCAPG00000011179	-	100	92.308	Cavia_aperea
ENSIPUG00000004508	lsm6	100	95.000	ENSCAPG00000008104	LSM6	100	95.000	Cavia_aperea
ENSIPUG00000004508	lsm6	100	95.000	ENSCPOG00000032655	LSM6	100	95.000	Cavia_porcellus
ENSIPUG00000004508	lsm6	99	93.671	ENSCCAG00000020665	-	99	93.671	Cebus_capucinus
ENSIPUG00000004508	lsm6	100	95.000	ENSCCAG00000036437	LSM6	100	95.000	Cebus_capucinus
ENSIPUG00000004508	lsm6	100	95.000	ENSCATG00000002770	-	100	95.000	Cercocebus_atys
ENSIPUG00000004508	lsm6	100	72.500	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSIPUG00000004508	lsm6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSIPUG00000004508	lsm6	100	95.000	ENSCLAG00000005495	LSM6	100	95.000	Chinchilla_lanigera
ENSIPUG00000004508	lsm6	100	95.000	ENSCSAG00000003421	LSM6	100	95.000	Chlorocebus_sabaeus
ENSIPUG00000004508	lsm6	100	75.000	ENSCHOG00000003420	LSM6	100	75.000	Choloepus_hoffmanni
ENSIPUG00000004508	lsm6	100	95.000	ENSCPBG00000027472	LSM6	84	95.000	Chrysemys_picta_bellii
ENSIPUG00000004508	lsm6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSIPUG00000004508	lsm6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSIPUG00000004508	lsm6	100	95.000	ENSCANG00000006849	-	100	95.000	Colobus_angolensis_palliatus
ENSIPUG00000004508	lsm6	100	68.750	ENSCANG00000035214	-	100	68.750	Colobus_angolensis_palliatus
ENSIPUG00000004508	lsm6	100	95.000	ENSCANG00000041263	-	100	95.000	Colobus_angolensis_palliatus
ENSIPUG00000004508	lsm6	100	95.000	ENSCGRG00001017142	Lsm6	100	95.000	Cricetulus_griseus_chok1gshd
ENSIPUG00000004508	lsm6	100	95.000	ENSCGRG00000008320	Lsm6	100	95.000	Cricetulus_griseus_crigri
ENSIPUG00000004508	lsm6	100	96.250	ENSCSEG00000000423	lsm6	100	96.250	Cynoglossus_semilaevis
ENSIPUG00000004508	lsm6	100	96.250	ENSCVAG00000001592	lsm6	100	96.250	Cyprinodon_variegatus
ENSIPUG00000004508	lsm6	100	98.750	ENSDARG00000036995	lsm6	100	98.750	Danio_rerio
ENSIPUG00000004508	lsm6	86	95.652	ENSDNOG00000040186	-	74	95.652	Dasypus_novemcinctus
ENSIPUG00000004508	lsm6	100	93.750	ENSDNOG00000044848	-	100	93.750	Dasypus_novemcinctus
ENSIPUG00000004508	lsm6	100	95.000	ENSDORG00000000933	Lsm6	100	95.000	Dipodomys_ordii
ENSIPUG00000004508	lsm6	96	81.818	FBgn0034564	CG9344	97	81.818	Drosophila_melanogaster
ENSIPUG00000004508	lsm6	60	93.750	ENSETEG00000013098	LSM6	100	93.750	Echinops_telfairi
ENSIPUG00000004508	lsm6	100	93.750	ENSEBUG00000017073	lsm6	100	93.750	Eptatretus_burgeri
ENSIPUG00000004508	lsm6	86	95.652	ENSEASG00005001533	LSM6	72	95.652	Equus_asinus_asinus
ENSIPUG00000004508	lsm6	100	95.000	ENSECAG00000021036	LSM6	100	95.000	Equus_caballus
ENSIPUG00000004508	lsm6	99	67.089	ENSEEUG00000002101	LSM6	100	67.089	Erinaceus_europaeus
ENSIPUG00000004508	lsm6	100	98.750	ENSELUG00000014301	LSM6	100	98.750	Esox_lucius
ENSIPUG00000004508	lsm6	100	95.000	ENSFCAG00000003047	LSM6	100	95.000	Felis_catus
ENSIPUG00000004508	lsm6	100	95.000	ENSFALG00000005509	LSM6	92	95.000	Ficedula_albicollis
ENSIPUG00000004508	lsm6	100	83.750	ENSFDAG00000019073	-	100	83.750	Fukomys_damarensis
ENSIPUG00000004508	lsm6	100	95.000	ENSFDAG00000020913	-	100	95.000	Fukomys_damarensis
ENSIPUG00000004508	lsm6	100	96.250	ENSFHEG00000007948	lsm6	100	96.250	Fundulus_heteroclitus
ENSIPUG00000004508	lsm6	100	96.250	ENSGMOG00000015550	lsm6	100	96.250	Gadus_morhua
ENSIPUG00000004508	lsm6	100	95.000	ENSGALG00000009985	LSM6	100	95.000	Gallus_gallus
ENSIPUG00000004508	lsm6	100	96.250	ENSGAFG00000017763	lsm6	100	96.250	Gambusia_affinis
ENSIPUG00000004508	lsm6	99	97.468	ENSGACG00000017223	lsm6	99	97.468	Gasterosteus_aculeatus
ENSIPUG00000004508	lsm6	100	95.000	ENSGAGG00000020980	LSM6	100	95.000	Gopherus_agassizii
ENSIPUG00000004508	lsm6	100	95.000	ENSGGOG00000001310	LSM6	100	95.000	Gorilla_gorilla
ENSIPUG00000004508	lsm6	100	96.250	ENSHBUG00000008618	lsm6	100	96.250	Haplochromis_burtoni
ENSIPUG00000004508	lsm6	100	95.000	ENSHGLG00000000205	LSM6	100	95.000	Heterocephalus_glaber_female
ENSIPUG00000004508	lsm6	100	95.000	ENSHGLG00100014341	LSM6	100	95.000	Heterocephalus_glaber_male
ENSIPUG00000004508	lsm6	100	96.250	ENSHCOG00000005591	lsm6	100	96.250	Hippocampus_comes
ENSIPUG00000004508	lsm6	100	95.000	ENSSTOG00000002678	LSM6	100	95.000	Ictidomys_tridecemlineatus
ENSIPUG00000004508	lsm6	100	85.000	ENSJJAG00000011211	-	100	85.000	Jaculus_jaculus
ENSIPUG00000004508	lsm6	96	76.623	ENSJJAG00000016942	-	97	76.623	Jaculus_jaculus
ENSIPUG00000004508	lsm6	100	95.000	ENSJJAG00000013845	-	100	95.000	Jaculus_jaculus
ENSIPUG00000004508	lsm6	100	96.250	ENSKMAG00000004105	lsm6	100	96.250	Kryptolebias_marmoratus
ENSIPUG00000004508	lsm6	100	96.250	ENSLBEG00000018441	lsm6	100	96.250	Labrus_bergylta
ENSIPUG00000004508	lsm6	100	95.000	ENSLACG00000006937	LSM6	100	95.000	Latimeria_chalumnae
ENSIPUG00000004508	lsm6	100	97.500	ENSLOCG00000017683	-	100	97.500	Lepisosteus_oculatus
ENSIPUG00000004508	lsm6	100	98.750	ENSLOCG00000008852	lsm6	100	98.750	Lepisosteus_oculatus
ENSIPUG00000004508	lsm6	100	95.000	ENSLAFG00000001952	LSM6	100	95.000	Loxodonta_africana
ENSIPUG00000004508	lsm6	100	95.000	ENSMFAG00000033073	LSM6	100	95.000	Macaca_fascicularis
ENSIPUG00000004508	lsm6	100	95.000	ENSMNEG00000034820	-	100	95.000	Macaca_nemestrina
ENSIPUG00000004508	lsm6	100	73.750	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSIPUG00000004508	lsm6	100	95.000	ENSMLEG00000035153	LSM6	100	95.000	Mandrillus_leucophaeus
ENSIPUG00000004508	lsm6	100	96.250	ENSMAMG00000014029	lsm6	100	96.250	Mastacembelus_armatus
ENSIPUG00000004508	lsm6	100	96.250	ENSMZEG00005009146	lsm6	100	96.250	Maylandia_zebra
ENSIPUG00000004508	lsm6	100	95.000	ENSMGAG00000003802	LSM6	100	95.000	Meleagris_gallopavo
ENSIPUG00000004508	lsm6	100	95.000	ENSMAUG00000014938	Lsm6	100	95.000	Mesocricetus_auratus
ENSIPUG00000004508	lsm6	100	95.000	ENSMICG00000042599	LSM6	100	95.000	Microcebus_murinus
ENSIPUG00000004508	lsm6	98	87.179	ENSMICG00000047411	-	92	87.179	Microcebus_murinus
ENSIPUG00000004508	lsm6	100	95.000	ENSMOCG00000020049	Lsm6	100	95.000	Microtus_ochrogaster
ENSIPUG00000004508	lsm6	100	96.250	ENSMMOG00000005470	lsm6	100	96.250	Mola_mola
ENSIPUG00000004508	lsm6	100	90.000	ENSMMOG00000007379	-	100	90.000	Mola_mola
ENSIPUG00000004508	lsm6	100	95.000	ENSMODG00000000526	LSM6	100	95.000	Monodelphis_domestica
ENSIPUG00000004508	lsm6	100	96.250	ENSMALG00000002419	lsm6	100	96.250	Monopterus_albus
ENSIPUG00000004508	lsm6	100	95.000	MGP_CAROLIEiJ_G0031245	Lsm6	100	95.000	Mus_caroli
ENSIPUG00000004508	lsm6	100	95.000	ENSMUSG00000031683	Lsm6	100	95.000	Mus_musculus
ENSIPUG00000004508	lsm6	100	95.000	MGP_PahariEiJ_G0022851	Lsm6	100	95.000	Mus_pahari
ENSIPUG00000004508	lsm6	100	95.000	MGP_SPRETEiJ_G0032365	Lsm6	100	95.000	Mus_spretus
ENSIPUG00000004508	lsm6	99	94.937	ENSMPUG00000006936	LSM6	92	94.937	Mustela_putorius_furo
ENSIPUG00000004508	lsm6	100	95.000	ENSMLUG00000026355	LSM6	100	95.000	Myotis_lucifugus
ENSIPUG00000004508	lsm6	100	95.000	ENSNGAG00000019116	Lsm6	100	95.000	Nannospalax_galili
ENSIPUG00000004508	lsm6	100	96.250	ENSNBRG00000004887	lsm6	100	96.250	Neolamprologus_brichardi
ENSIPUG00000004508	lsm6	100	95.000	ENSNLEG00000005584	LSM6	100	95.000	Nomascus_leucogenys
ENSIPUG00000004508	lsm6	100	93.750	ENSOPRG00000011199	LSM6	100	93.750	Ochotona_princeps
ENSIPUG00000004508	lsm6	96	84.416	ENSODEG00000018684	-	100	84.416	Octodon_degus
ENSIPUG00000004508	lsm6	100	92.500	ENSODEG00000020420	-	100	92.500	Octodon_degus
ENSIPUG00000004508	lsm6	100	93.750	ENSODEG00000002307	-	100	93.750	Octodon_degus
ENSIPUG00000004508	lsm6	100	93.750	ENSODEG00000019419	-	100	93.750	Octodon_degus
ENSIPUG00000004508	lsm6	100	96.250	ENSONIG00000010005	lsm6	100	96.250	Oreochromis_niloticus
ENSIPUG00000004508	lsm6	98	69.231	ENSOANG00000006894	-	100	69.231	Ornithorhynchus_anatinus
ENSIPUG00000004508	lsm6	98	69.231	ENSOANG00000006895	-	100	69.231	Ornithorhynchus_anatinus
ENSIPUG00000004508	lsm6	100	96.250	ENSORLG00000024158	lsm6	100	96.250	Oryzias_latipes
ENSIPUG00000004508	lsm6	100	96.250	ENSORLG00020017383	lsm6	100	96.250	Oryzias_latipes_hni
ENSIPUG00000004508	lsm6	100	96.250	ENSORLG00015016903	lsm6	100	96.250	Oryzias_latipes_hsok
ENSIPUG00000004508	lsm6	100	96.250	ENSOMEG00000000074	lsm6	100	96.250	Oryzias_melastigma
ENSIPUG00000004508	lsm6	100	95.000	ENSOGAG00000033153	-	100	95.000	Otolemur_garnettii
ENSIPUG00000004508	lsm6	100	95.000	ENSOGAG00000026665	-	100	95.000	Otolemur_garnettii
ENSIPUG00000004508	lsm6	86	95.652	ENSOARG00000008509	-	88	95.652	Ovis_aries
ENSIPUG00000004508	lsm6	99	88.608	ENSOARG00000011641	-	92	88.608	Ovis_aries
ENSIPUG00000004508	lsm6	100	95.000	ENSPPAG00000037929	LSM6	100	95.000	Pan_paniscus
ENSIPUG00000004508	lsm6	100	95.000	ENSPPRG00000012806	LSM6	100	95.000	Panthera_pardus
ENSIPUG00000004508	lsm6	100	95.000	ENSPTIG00000019769	LSM6	100	95.000	Panthera_tigris_altaica
ENSIPUG00000004508	lsm6	100	95.000	ENSPTRG00000016488	LSM6	100	95.000	Pan_troglodytes
ENSIPUG00000004508	lsm6	100	95.000	ENSPANG00000006552	LSM6	100	95.000	Papio_anubis
ENSIPUG00000004508	lsm6	100	98.750	ENSPKIG00000016176	lsm6	100	98.750	Paramormyrops_kingsleyae
ENSIPUG00000004508	lsm6	100	95.000	ENSPSIG00000016942	LSM6	100	95.000	Pelodiscus_sinensis
ENSIPUG00000004508	lsm6	100	96.250	ENSPMGG00000018004	lsm6	100	96.250	Periophthalmus_magnuspinnatus
ENSIPUG00000004508	lsm6	100	95.000	ENSPEMG00000012410	Lsm6	100	95.000	Peromyscus_maniculatus_bairdii
ENSIPUG00000004508	lsm6	100	93.750	ENSPMAG00000006949	lsm6	100	93.750	Petromyzon_marinus
ENSIPUG00000004508	lsm6	100	95.000	ENSPCIG00000023469	LSM6	80	95.652	Phascolarctos_cinereus
ENSIPUG00000004508	lsm6	100	96.250	ENSPFOG00000008881	lsm6	100	96.250	Poecilia_formosa
ENSIPUG00000004508	lsm6	100	96.250	ENSPLAG00000003202	lsm6	100	96.250	Poecilia_latipinna
ENSIPUG00000004508	lsm6	100	96.250	ENSPMEG00000004000	lsm6	100	96.250	Poecilia_mexicana
ENSIPUG00000004508	lsm6	100	96.250	ENSPREG00000023235	lsm6	100	96.250	Poecilia_reticulata
ENSIPUG00000004508	lsm6	100	95.000	ENSPPYG00000015105	LSM6	100	95.000	Pongo_abelii
ENSIPUG00000004508	lsm6	100	95.000	ENSPCOG00000013899	LSM6	100	95.000	Propithecus_coquereli
ENSIPUG00000004508	lsm6	100	96.250	ENSPNYG00000012614	lsm6	100	96.250	Pundamilia_nyererei
ENSIPUG00000004508	lsm6	100	98.750	ENSPNAG00000018779	lsm6	100	98.750	Pygocentrus_nattereri
ENSIPUG00000004508	lsm6	100	95.000	ENSRNOG00000049370	LOC100360750	100	95.000	Rattus_norvegicus
ENSIPUG00000004508	lsm6	100	95.000	ENSRNOG00000030374	Lsm6	100	95.000	Rattus_norvegicus
ENSIPUG00000004508	lsm6	100	95.000	ENSRBIG00000027878	LSM6	100	95.000	Rhinopithecus_bieti
ENSIPUG00000004508	lsm6	100	95.000	ENSRROG00000024868	LSM6	100	95.000	Rhinopithecus_roxellana
ENSIPUG00000004508	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSIPUG00000004508	lsm6	100	68.750	ENSSBOG00000028103	-	100	68.750	Saimiri_boliviensis_boliviensis
ENSIPUG00000004508	lsm6	100	95.000	ENSSBOG00000021229	-	100	95.000	Saimiri_boliviensis_boliviensis
ENSIPUG00000004508	lsm6	100	98.750	ENSSFOG00015016480	lsm6	100	98.750	Scleropages_formosus
ENSIPUG00000004508	lsm6	100	96.250	ENSSMAG00000004550	lsm6	100	96.250	Scophthalmus_maximus
ENSIPUG00000004508	lsm6	100	96.250	ENSSDUG00000020459	lsm6	50	96.250	Seriola_dumerili
ENSIPUG00000004508	lsm6	100	96.250	ENSSLDG00000020533	lsm6	83	96.250	Seriola_lalandi_dorsalis
ENSIPUG00000004508	lsm6	86	97.101	ENSSLDG00000004136	-	59	97.101	Seriola_lalandi_dorsalis
ENSIPUG00000004508	lsm6	60	93.750	ENSSARG00000000689	LSM6	100	93.750	Sorex_araneus
ENSIPUG00000004508	lsm6	100	95.000	ENSSPUG00000008657	LSM6	100	95.000	Sphenodon_punctatus
ENSIPUG00000004508	lsm6	100	96.250	ENSSPAG00000003246	lsm6	100	96.250	Stegastes_partitus
ENSIPUG00000004508	lsm6	100	95.000	ENSSSCG00000035973	LSM6	100	95.000	Sus_scrofa
ENSIPUG00000004508	lsm6	100	95.000	ENSTGUG00000002663	LSM6	100	95.000	Taeniopygia_guttata
ENSIPUG00000004508	lsm6	100	96.250	ENSTRUG00000023398	lsm6	100	96.250	Takifugu_rubripes
ENSIPUG00000004508	lsm6	100	96.250	ENSTNIG00000017725	lsm6	100	96.250	Tetraodon_nigroviridis
ENSIPUG00000004508	lsm6	100	95.000	ENSTTRG00000004609	LSM6	100	95.000	Tursiops_truncatus
ENSIPUG00000004508	lsm6	98	87.179	ENSUAMG00000014213	LSM6	64	87.179	Ursus_americanus
ENSIPUG00000004508	lsm6	98	87.179	ENSUMAG00000015727	LSM6	64	87.179	Ursus_maritimus
ENSIPUG00000004508	lsm6	100	95.000	ENSVPAG00000006922	LSM6	100	95.000	Vicugna_pacos
ENSIPUG00000004508	lsm6	100	95.000	ENSVVUG00000009254	LSM6	68	95.000	Vulpes_vulpes
ENSIPUG00000004508	lsm6	100	95.000	ENSXETG00000023683	lsm6	100	95.000	Xenopus_tropicalis
ENSIPUG00000004508	lsm6	100	96.250	ENSXMAG00000009606	lsm6	100	96.250	Xiphophorus_maculatus