EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSIPUG00000004660 (Gene tree)
Gene ID
108268151
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U)-binding-splicing factor PUF60-B-like
Gene Type
protein_coding
Species
Ictalurus_punctatus
Status
putative
Strand
Plus strand
Length
14217 bases
Position
chr7:5431711-5445927
Accession
108268151
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSIPUP00000006721RRM_1PF00076.223.5e-4412
ENSIPUP00000006721RRM_1PF00076.223.5e-4422
ENSIPUP00000006708RRM_1PF00076.224.1e-4412
ENSIPUP00000006708RRM_1PF00076.224.1e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSIPUT00000007003-2366XM_017472932ENSIPUP00000006708522 (aa)XP_017328421A0A2D0RE55
ENSIPUT00000007016-2315XM_017472934ENSIPUP00000006721505 (aa)XP_017328423A0A2D0RD06
Gene Model
Click here to download ENSIPUG00000004660's gene model file
Pathways
Pathway IDPathway NameSource
ipu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSIPUG00000004660's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSIPUG00000004660puf60b10077.210ENSIPUG00000002453puf60a10077.570
ENSIPUG00000004660puf60b5338.235ENSIPUG00000009077u2af26538.235
ENSIPUG00000004660puf60b6538.235ENSIPUG00000009844-7538.235
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSIPUG00000004660puf60b9978.343ENSG00000179950PUF6010078.571Homo_sapiens
ENSIPUG00000004660puf60b9982.197ENSAPOG00000001713puf60b9882.197Acanthochromis_polyacanthus
ENSIPUG00000004660puf60b9976.460ENSAMEG00000006406PUF609276.504Ailuropoda_melanoleuca
ENSIPUG00000004660puf60b10073.320ENSACIG00000003263-10073.715Amphilophus_citrinellus
ENSIPUG00000004660puf60b9982.197ENSACIG00000021705puf60b10082.576Amphilophus_citrinellus
ENSIPUG00000004660puf60b10076.604ENSAOCG00000015558-9876.792Amphiprion_ocellaris
ENSIPUG00000004660puf60b9982.197ENSAOCG00000005395puf60b10082.197Amphiprion_ocellaris
ENSIPUG00000004660puf60b10075.591ENSAPEG00000001836-10075.591Amphiprion_percula
ENSIPUG00000004660puf60b9979.452ENSAPEG00000011923puf60b9779.452Amphiprion_percula
ENSIPUG00000004660puf60b10077.462ENSATEG00000006303-9877.841Anabas_testudineus
ENSIPUG00000004660puf60b9981.818ENSATEG00000001730puf60b9882.197Anabas_testudineus
ENSIPUG00000004660puf60b9978.947ENSAPLG00000010150PUF609978.879Anas_platyrhynchos
ENSIPUG00000004660puf60b9977.944ENSACAG00000001645PUF609677.881Anolis_carolinensis
ENSIPUG00000004660puf60b9978.343ENSANAG00000018626PUF6010078.571Aotus_nancymaae
ENSIPUG00000004660puf60b9982.197ENSACLG00000004462puf60b10082.576Astatotilapia_calliptera
ENSIPUG00000004660puf60b9978.558ENSAMXG00000036570puf60a9779.727Astyanax_mexicanus
ENSIPUG00000004660puf60b9987.332ENSAMXG00000041030puf60b10087.572Astyanax_mexicanus
ENSIPUG00000004660puf60b9978.719ENSBTAG00000037493PUF609878.947Bos_taurus
ENSIPUG00000004660puf60b7352.650WBGene00004389rnp-68353.310Caenorhabditis_elegans
ENSIPUG00000004660puf60b9978.343ENSCJAG00000021485PUF609778.571Callithrix_jacchus
ENSIPUG00000004660puf60b9978.154ENSCAFG00000001400PUF609278.383Canis_familiaris
ENSIPUG00000004660puf60b9978.531ENSCAFG00020018754PUF609778.759Canis_lupus_dingo
ENSIPUG00000004660puf60b9978.719ENSCHIG00000001618PUF608678.947Capra_hircus
ENSIPUG00000004660puf60b9978.531ENSTSYG00000011912PUF6010078.759Carlito_syrichta
ENSIPUG00000004660puf60b9973.645ENSCPOG00000014613PUF609373.881Cavia_porcellus
ENSIPUG00000004660puf60b9978.571ENSCCAG00000007744PUF609778.318Cebus_capucinus
ENSIPUG00000004660puf60b9978.343ENSCATG00000035405PUF609778.571Cercocebus_atys
ENSIPUG00000004660puf60b9978.531ENSCLAG00000009154PUF609178.759Chinchilla_lanigera
ENSIPUG00000004660puf60b9978.343ENSCSAG00000008878PUF6010078.571Chlorocebus_sabaeus
ENSIPUG00000004660puf60b9978.759ENSCPBG00000005595PUF609778.692Chrysemys_picta_bellii
ENSIPUG00000004660puf60b6261.538ENSCING00000002156-8861.538Ciona_intestinalis
ENSIPUG00000004660puf60b9846.628ENSCING00000008436-9546.498Ciona_intestinalis
ENSIPUG00000004660puf60b9745.714ENSCSAVG00000004765-9746.154Ciona_savignyi
ENSIPUG00000004660puf60b9752.273ENSCSAVG00000001385-9951.316Ciona_savignyi
ENSIPUG00000004660puf60b6988.219ENSCANG00000041843PUF608888.219Colobus_angolensis_palliatus
ENSIPUG00000004660puf60b9978.719ENSCGRG00001017442Puf609179.135Cricetulus_griseus_chok1gshd
ENSIPUG00000004660puf60b9978.719ENSCGRG00000003717Puf609279.135Cricetulus_griseus_crigri
ENSIPUG00000004660puf60b10070.760ENSCSEG00000014845-8972.481Cynoglossus_semilaevis
ENSIPUG00000004660puf60b9981.644ENSCSEG00000019887puf60b9181.629Cynoglossus_semilaevis
ENSIPUG00000004660puf60b9981.629ENSCVAG00000009386puf60b10082.008Cyprinodon_variegatus
ENSIPUG00000004660puf60b9076.872ENSCVAG00000001560-9875.569Cyprinodon_variegatus
ENSIPUG00000004660puf60b10086.398ENSDARG00000001241puf60b10097.638Danio_rerio
ENSIPUG00000004660puf60b10078.692ENSDARG00000032175puf60a10091.975Danio_rerio
ENSIPUG00000004660puf60b9864.313ENSDNOG00000043278PUF609064.571Dasypus_novemcinctus
ENSIPUG00000004660puf60b9978.719ENSDORG00000004585Puf609478.947Dipodomys_ordii
ENSIPUG00000004660puf60b9749.291FBgn0028577hfp9948.995Drosophila_melanogaster
ENSIPUG00000004660puf60b9957.414ENSEBUG00000014291puf60b8459.758Eptatretus_burgeri
ENSIPUG00000004660puf60b9767.409ENSEBUG00000005470-8867.140Eptatretus_burgeri
ENSIPUG00000004660puf60b9978.531ENSEASG00005009695PUF609778.759Equus_asinus_asinus
ENSIPUG00000004660puf60b9978.531ENSECAG00000024681PUF609678.759Equus_caballus
ENSIPUG00000004660puf60b10079.135ENSELUG00000006507puf60b10077.117Esox_lucius
ENSIPUG00000004660puf60b10080.303ENSELUG00000018443-10080.777Esox_lucius
ENSIPUG00000004660puf60b9978.531ENSFCAG00000001045PUF6010078.759Felis_catus
ENSIPUG00000004660puf60b9969.925ENSFALG00000001136PUF609770.280Ficedula_albicollis
ENSIPUG00000004660puf60b9978.719ENSFDAG00000017177PUF609178.947Fukomys_damarensis
ENSIPUG00000004660puf60b9676.285ENSFHEG00000021687PUF6010077.264Fundulus_heteroclitus
ENSIPUG00000004660puf60b9981.818ENSFHEG00000020046puf60b10082.197Fundulus_heteroclitus
ENSIPUG00000004660puf60b9968.750ENSGMOG00000006392puf60b9968.939Gadus_morhua
ENSIPUG00000004660puf60b6588.630ENSGALG00000039901PUF609488.630Gallus_gallus
ENSIPUG00000004660puf60b10076.726ENSGAFG00000004334-10076.726Gambusia_affinis
ENSIPUG00000004660puf60b9981.818ENSGAFG00000021040puf60b10082.197Gambusia_affinis
ENSIPUG00000004660puf60b10069.524ENSGACG00000001484-10069.157Gasterosteus_aculeatus
ENSIPUG00000004660puf60b9969.697ENSGACG00000004717puf60b9769.697Gasterosteus_aculeatus
ENSIPUG00000004660puf60b9978.759ENSGAGG00000013289PUF609178.692Gopherus_agassizii
ENSIPUG00000004660puf60b9978.343ENSGGOG00000004646PUF609778.571Gorilla_gorilla
ENSIPUG00000004660puf60b9982.197ENSHBUG00000015118puf60b10082.576Haplochromis_burtoni
ENSIPUG00000004660puf60b10077.609ENSHBUG00000009634-10078.431Haplochromis_burtoni
ENSIPUG00000004660puf60b9978.719ENSHGLG00000006111PUF609178.947Heterocephalus_glaber_female
ENSIPUG00000004660puf60b9978.719ENSHGLG00100012362PUF609178.947Heterocephalus_glaber_male
ENSIPUG00000004660puf60b9979.705ENSHCOG00000015541puf60b9980.258Hippocampus_comes
ENSIPUG00000004660puf60b9866.859ENSHCOG00000000378-9965.677Hippocampus_comes
ENSIPUG00000004660puf60b9978.531ENSSTOG00000025037PUF609278.759Ictidomys_tridecemlineatus
ENSIPUG00000004660puf60b9978.719ENSJJAG00000001076Puf609278.947Jaculus_jaculus
ENSIPUG00000004660puf60b9982.386ENSKMAG00000016745puf60b10082.765Kryptolebias_marmoratus
ENSIPUG00000004660puf60b9973.157ENSKMAG00000010106-10072.608Kryptolebias_marmoratus
ENSIPUG00000004660puf60b9983.117ENSLBEG00000012505puf60b10083.117Labrus_bergylta
ENSIPUG00000004660puf60b5786.102ENSLACG00000005456PUF608186.102Latimeria_chalumnae
ENSIPUG00000004660puf60b10082.027ENSLOCG00000010106puf60b9881.887Lepisosteus_oculatus
ENSIPUG00000004660puf60b9977.401ENSLAFG00000022929PUF609377.632Loxodonta_africana
ENSIPUG00000004660puf60b9978.343ENSMFAG00000043373PUF609878.571Macaca_fascicularis
ENSIPUG00000004660puf60b9978.343ENSMMUG00000013558PUF609778.571Macaca_mulatta
ENSIPUG00000004660puf60b9978.343ENSMNEG00000031099PUF609778.571Macaca_nemestrina
ENSIPUG00000004660puf60b9978.343ENSMLEG00000040009PUF6010078.571Mandrillus_leucophaeus
ENSIPUG00000004660puf60b10077.966ENSMAMG00000019476-9878.343Mastacembelus_armatus
ENSIPUG00000004660puf60b9980.880ENSMAMG00000010394puf60b10078.967Mastacembelus_armatus
ENSIPUG00000004660puf60b9982.197ENSMZEG00005018515puf60b10082.576Maylandia_zebra
ENSIPUG00000004660puf60b10077.609ENSMZEG00005019425-9878.220Maylandia_zebra
ENSIPUG00000004660puf60b9978.947ENSMGAG00000013070PUF609588.953Meleagris_gallopavo
ENSIPUG00000004660puf60b6888.611ENSMAUG00000014267-8888.611Mesocricetus_auratus
ENSIPUG00000004660puf60b9563.984ENSMAUG00000018549-9564.659Mesocricetus_auratus
ENSIPUG00000004660puf60b9978.531ENSMICG00000012226PUF609878.759Microcebus_murinus
ENSIPUG00000004660puf60b9978.719ENSMOCG00000018780Puf609278.947Microtus_ochrogaster
ENSIPUG00000004660puf60b9981.629ENSMMOG00000004217puf60b10081.629Mola_mola
ENSIPUG00000004660puf60b10070.809ENSMMOG00000018059-9975.000Mola_mola
ENSIPUG00000004660puf60b9978.788ENSMODG00000009161PUF609378.318Monodelphis_domestica
ENSIPUG00000004660puf60b9974.053ENSMALG00000006797puf60b9774.053Monopterus_albus
ENSIPUG00000004660puf60b10077.083ENSMALG00000000200-9877.273Monopterus_albus
ENSIPUG00000004660puf60b9978.531MGP_CAROLIEiJ_G0019910Puf609178.759Mus_caroli
ENSIPUG00000004660puf60b9978.531ENSMUSG00000002524Puf609178.759Mus_musculus
ENSIPUG00000004660puf60b9978.531MGP_PahariEiJ_G0019920Puf609178.759Mus_pahari
ENSIPUG00000004660puf60b9978.531MGP_SPRETEiJ_G0020812Puf609178.759Mus_spretus
ENSIPUG00000004660puf60b9978.343ENSMPUG00000008137PUF609178.571Mustela_putorius_furo
ENSIPUG00000004660puf60b9975.097ENSMLUG00000013032-9775.340Myotis_lucifugus
ENSIPUG00000004660puf60b9978.154ENSMLUG00000000238-9278.692Myotis_lucifugus
ENSIPUG00000004660puf60b9978.719ENSNGAG00000000712Puf6010078.947Nannospalax_galili
ENSIPUG00000004660puf60b10078.220ENSNBRG00000017223-9877.736Neolamprologus_brichardi
ENSIPUG00000004660puf60b8378.924ENSNBRG00000013047puf60b9680.556Neolamprologus_brichardi
ENSIPUG00000004660puf60b9978.343ENSNLEG00000002156PUF609778.571Nomascus_leucogenys
ENSIPUG00000004660puf60b7193.141ENSOPRG00000002147PUF607293.141Ochotona_princeps
ENSIPUG00000004660puf60b9858.984ENSODEG00000015513-9757.467Octodon_degus
ENSIPUG00000004660puf60b7090.625ENSODEG00000014024-8990.625Octodon_degus
ENSIPUG00000004660puf60b10077.438ENSONIG00000014030-9877.925Oreochromis_niloticus
ENSIPUG00000004660puf60b9982.197ENSONIG00000006247puf60b9782.576Oreochromis_niloticus
ENSIPUG00000004660puf60b9764.591ENSOANG00000006962PUF609764.660Ornithorhynchus_anatinus
ENSIPUG00000004660puf60b9982.197ENSORLG00000012279puf60b10082.576Oryzias_latipes
ENSIPUG00000004660puf60b9975.889ENSORLG00000028655-9976.575Oryzias_latipes
ENSIPUG00000004660puf60b9982.197ENSORLG00020007333puf6010082.576Oryzias_latipes_hni
ENSIPUG00000004660puf60b9976.091ENSORLG00020018144-9876.996Oryzias_latipes_hni
ENSIPUG00000004660puf60b9976.091ENSORLG00015016833-9876.996Oryzias_latipes_hsok
ENSIPUG00000004660puf60b9982.197ENSORLG00015007718puf60b10082.386Oryzias_latipes_hsok
ENSIPUG00000004660puf60b9977.120ENSOMEG00000022185-9876.908Oryzias_melastigma
ENSIPUG00000004660puf60b9982.540ENSOMEG00000001643puf60b10082.143Oryzias_melastigma
ENSIPUG00000004660puf60b9978.531ENSOGAG00000006259PUF609278.759Otolemur_garnettii
ENSIPUG00000004660puf60b9976.894ENSOARG00000016235PUF609777.127Ovis_aries
ENSIPUG00000004660puf60b9978.343ENSPPAG00000029933PUF609778.571Pan_paniscus
ENSIPUG00000004660puf60b9978.531ENSPPRG00000003257PUF6010078.759Panthera_pardus
ENSIPUG00000004660puf60b9977.821ENSPTIG00000009795PUF609876.504Panthera_tigris_altaica
ENSIPUG00000004660puf60b9978.154ENSPTRG00000043963-9778.383Pan_troglodytes
ENSIPUG00000004660puf60b9978.154ENSPTRG00000020670PUF609778.383Pan_troglodytes
ENSIPUG00000004660puf60b9978.343ENSPANG00000021936PUF609778.571Papio_anubis
ENSIPUG00000004660puf60b9982.950ENSPKIG00000012204puf60b10083.144Paramormyrops_kingsleyae
ENSIPUG00000004660puf60b10080.897ENSPKIG00000004295puf60a10090.476Paramormyrops_kingsleyae
ENSIPUG00000004660puf60b9978.383ENSPSIG00000004679PUF609878.383Pelodiscus_sinensis
ENSIPUG00000004660puf60b10080.906ENSPMGG00000013444puf60b9980.709Periophthalmus_magnuspinnatus
ENSIPUG00000004660puf60b9978.719ENSPEMG00000008820Puf609278.947Peromyscus_maniculatus_bairdii
ENSIPUG00000004660puf60b9978.531ENSPCIG00000020270PUF609878.759Phascolarctos_cinereus
ENSIPUG00000004660puf60b9981.818ENSPFOG00000019217puf60b9881.800Poecilia_formosa
ENSIPUG00000004660puf60b10075.706ENSPFOG00000011118-9876.083Poecilia_formosa
ENSIPUG00000004660puf60b10075.706ENSPLAG00000017025-9075.706Poecilia_latipinna
ENSIPUG00000004660puf60b9981.818ENSPLAG00000010754puf60b10082.197Poecilia_latipinna
ENSIPUG00000004660puf60b10075.706ENSPMEG00000009767-9076.083Poecilia_mexicana
ENSIPUG00000004660puf60b9981.818ENSPMEG00000000838puf60b10082.197Poecilia_mexicana
ENSIPUG00000004660puf60b9982.738ENSPREG00000005440puf60b10082.738Poecilia_reticulata
ENSIPUG00000004660puf60b6986.301ENSPPYG00000018951-8386.301Pongo_abelii
ENSIPUG00000004660puf60b6988.219ENSPCAG00000014837PUF608888.219Procavia_capensis
ENSIPUG00000004660puf60b9978.343ENSPCOG00000027981PUF609878.571Propithecus_coquereli
ENSIPUG00000004660puf60b9996.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSIPUG00000004660puf60b10077.609ENSPNYG00000004273-9878.220Pundamilia_nyererei
ENSIPUG00000004660puf60b9982.197ENSPNYG00000002556puf60b10082.576Pundamilia_nyererei
ENSIPUG00000004660puf60b9978.752ENSPNAG00000019909puf60a9979.922Pygocentrus_nattereri
ENSIPUG00000004660puf60b10086.733ENSPNAG00000019415puf60b8986.733Pygocentrus_nattereri
ENSIPUG00000004660puf60b9978.531ENSRNOG00000009960Puf609278.759Rattus_norvegicus
ENSIPUG00000004660puf60b9978.343ENSRBIG00000035274PUF609778.571Rhinopithecus_bieti
ENSIPUG00000004660puf60b9978.343ENSRROG00000029360PUF609878.571Rhinopithecus_roxellana
ENSIPUG00000004660puf60b9977.024ENSSBOG00000027089PUF609777.256Saimiri_boliviensis_boliviensis
ENSIPUG00000004660puf60b8977.895ENSSHAG00000006668PUF608878.151Sarcophilus_harrisii
ENSIPUG00000004660puf60b9983.109ENSSFOG00015019619puf60b10083.109Scleropages_formosus
ENSIPUG00000004660puf60b10076.000ENSSFOG00015019371puf60a9880.952Scleropages_formosus
ENSIPUG00000004660puf60b7294.224ENSSMAG00000016381puf60b7294.224Scophthalmus_maximus
ENSIPUG00000004660puf60b9981.548ENSSDUG00000009935puf60b10081.548Seriola_dumerili
ENSIPUG00000004660puf60b9778.082ENSSDUG00000007048-9578.082Seriola_dumerili
ENSIPUG00000004660puf60b9982.027ENSSLDG00000024011puf60b10080.074Seriola_lalandi_dorsalis
ENSIPUG00000004660puf60b10076.038ENSSLDG00000007366-10076.460Seriola_lalandi_dorsalis
ENSIPUG00000004660puf60b6477.286ENSSPUG00000013518PUF609277.879Sphenodon_punctatus
ENSIPUG00000004660puf60b9977.799ENSSPAG00000020285-10077.799Stegastes_partitus
ENSIPUG00000004660puf60b9979.143ENSSPAG00000012144puf60b10079.889Stegastes_partitus
ENSIPUG00000004660puf60b9978.531ENSSSCG00000038800PUF6010075.372Sus_scrofa
ENSIPUG00000004660puf60b9976.515ENSTGUG00000012797-9976.217Taeniopygia_guttata
ENSIPUG00000004660puf60b9974.805ENSTRUG00000008843-10075.195Takifugu_rubripes
ENSIPUG00000004660puf60b9981.836ENSTRUG00000005420puf60b10079.705Takifugu_rubripes
ENSIPUG00000004660puf60b9981.836ENSTNIG00000013675puf60b9981.818Tetraodon_nigroviridis
ENSIPUG00000004660puf60b10073.624ENSTNIG00000003069-9974.573Tetraodon_nigroviridis
ENSIPUG00000004660puf60b7757.263ENSTBEG00000001899-10058.242Tupaia_belangeri
ENSIPUG00000004660puf60b5684.880ENSTBEG00000002751-9784.880Tupaia_belangeri
ENSIPUG00000004660puf60b9977.401ENSTTRG00000017088PUF6010077.820Tursiops_truncatus
ENSIPUG00000004660puf60b9978.531ENSUAMG00000024917PUF609778.759Ursus_americanus
ENSIPUG00000004660puf60b9976.894ENSUMAG00000000272PUF609277.213Ursus_maritimus
ENSIPUG00000004660puf60b9978.531ENSVVUG00000022527PUF6010078.759Vulpes_vulpes
ENSIPUG00000004660puf60b9978.977ENSXETG00000012469puf609878.571Xenopus_tropicalis
ENSIPUG00000004660puf60b9981.409ENSXCOG00000012355puf60b10081.800Xiphophorus_couchianus
ENSIPUG00000004660puf60b10075.740ENSXMAG00000010507-9875.740Xiphophorus_maculatus
ENSIPUG00000004660puf60b9981.818ENSXMAG00000001862puf60b10082.197Xiphophorus_maculatus

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